mRNA_Ecto-sp13_S_contig17974.5494.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17974.5494.1
Unique NamemRNA_Ecto-sp13_S_contig17974.5494.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17974.5494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17974contigEcto-sp13_S_contig17974:2..3276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size207
Hectar predicted targeting categoryother localisation
Exons3
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462929.3440557-CDS-Ecto-sp13_S_contig17974:1..681681462929.3440557-CDS-Ecto-sp13_S_contig17974:1..68Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17974 2..68 +
1681462929.3529034-CDS-Ecto-sp13_S_contig17974:475..5251681462929.3529034-CDS-Ecto-sp13_S_contig17974:475..525Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17974 476..525 +
1681462929.3612094-CDS-Ecto-sp13_S_contig17974:3186..32761681462929.3612094-CDS-Ecto-sp13_S_contig17974:3186..3276Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17974 3187..3276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17974.5494.1prot_Ecto-sp13_S_contig17974.5494.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17974 2..3276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17974.5494.1

>prot_Ecto-sp13_S_contig17974.5494.1 ID=prot_Ecto-sp13_S_contig17974.5494.1|Name=mRNA_Ecto-sp13_S_contig17974.5494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
ATQDNQVWLSNNQRDYKDHSKQAGGNCEMTPVVVKKTDMAAMIGFQGRMA
GRLATEARESHGEVKLLE*
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mRNA from alignment at Ecto-sp13_S_contig17974:2..3276+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17974.5494.1 ID=mRNA_Ecto-sp13_S_contig17974.5494.1|Name=mRNA_Ecto-sp13_S_contig17974.5494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3275bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17974:2..3276+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCACGCAGGACAATCAAGTGTGGCTCAGTAATAATCAACGAGACTACAA
GGATCACTCGAAGCAAGGTGAAGGCGAAGCGGAGACGGGGAGGTCTACAA
AATGTAGTCTACGGTACATGTAGTGTAGTCCTTCGCTCCGAAGCAGTAGT
CTGAACTGCCCGCTTCACGTCTCTGGTGGTCGATAGAATCATGGTCGTTC
GTTACGTAGCAAGTGCGGCAGAATTGTCGCACCTACCTCGGAAGGTGCAG
GAAGGCCAAATGGCGCTGCAATTGCACACACGATCGTGCGAAAAAATGGG
GAGGCTCCTTCATTCGCAGTGTTCGTTTCATCTTCGTCTATGTCTAACTA
AATGTTGGGGTTATCGTAGACTCTTCATCTATGGCATGCATTGAGAGAGG
ATACTTGTATGTATAATGAAGTTTGCTCCTCCGATATGATCCCCTCTCGG
TCCTGTTTGGCACAAATTACCCAGCAGGTGGAAACTGCGAGATGACGCCT
GTCGTTGTCAAGAAGACGGATATGGTGAGCTATTTCGTCTAGAGTTTGGG
TCGACTACAGCCGAGTGAAGACCATATTGGACTACATGTTGTGAAGGCTA
TACCTCGACGATGTCCTTAGGTACGAGGCGTACCCAGTAAATCTTTTCCA
GGTGCACTACACATGCAGCGATGTGGACGACAAGTGGTTTTCATGTGCAG
TTCCATCACGAAAAGTATTCGGTGGTTGGTGCGGGCTGACACAAACGCCA
CACACCGGCCCGATTCTGTTTAGATCTCGAGGCAACAGTTGATTGCGCTT
TGAAGGCCAGCAGGCTCCACAACAAACAGTATATAGCTAAAGCTCGGAAA
CAAAGGTGGACGGAAAACAAATGATACCGAGGGGGAAGTTTCCAAAAACC
ACCGCCGTTTCTAAGGGAACTGTTGTTCGACGACGGGGTTCTGCCTTCCA
TGCTAGCTGCCCTCGTTGTTAAGGGAACTTCGACCAAACACATATTAACC
AAGCACCGTGCGTGAGCGTAGACAACAAGCTGTTCCGCTCACCCTAACAC
ATAATCCCAGGCGTGTTGGAAGATAGCAAAACAAACTCGAAGAGTTGCGT
GGTTCTATCTCTGCATGCCAACCACATGGGGGCTCAATCAGTAACAACCT
GTCACGATCACTGGGAATGCGAGATATTCTACCACCACCGCTACAGAACG
CGCCACCACTTAAGAATCGCTTATTTTGCGTGAGGCTCGACGCTTACTAG
TGGCCCCAAACCGAGCACATGTTCTTATTTGCCGAGTTCTTATTTGGAGC
AGGCATCCACCTACGATAAATGAGGTTCCTGTTCTTATTTACTTCCACGT
CGATTACTCCATGTAGAGGACGCAGGTCAATGCGGATGGATTTCAACGTG
ACCGTTGAAAGTAGAGTGTTTGACACCAGCAGAAAACATCGTTCGACAGG
ATCTCCGGATCGAACGCACTGCAACTTCCGCGATCACTTTAAAGTAGGAG
GGCAGGCAGGCGCGGCATCGCCGTAAGAAGAGGTATCATGGGCAACATTC
AGCTGCTTAGTGGTCCACAAGGGTCACGTTGTGCGTGTCCTCCCCGCTCT
ATCTACTAACCCCCCGTCGTGACTACACTGCTGGTGGCCGGATCTCTCCC
TTGCTCTGGGATGGTAGTATCTCACCCCTCCTCTATGGTGTCCCCCTCCA
CCAAAACCCACGACCCTACCACCGCATCCGCATCTCCGCTGTACTTCTCC
AACGGCAGCTTCATGCTGCGTGCACTTTGGTCGAGCTCAAAATGCACAGG
GTAGTCGTAAAGGTGACGGGTACGCTCCTGAGACTGCCGAGTGATCAGCC
CACCAAGCCAACCTAGGCTCAGCCTAACTAGTACTCCACGCTGCAGTAAC
GAACTATCAAAAGCAGCAGGAGTAGCCTCTTGAAGGCGAAAACCCTCGGG
AATCTCCATGCCGTGAATCTCATCGGCCTGGTCCATGGTGTCGTCTTCGT
CCAGAAGACTCAGCTCGTCGTTCTGGCCGCGGGCCGTGTCTGCAGAGATC
GGCATTGAATTTACACAGCAACATCACCAAGTTAGTTTCCTCAACATGAA
CCATCCATGGAAGCAAGAGCAGTAACAATCACAACAACAACAACAACAAC
AACAACAACATCAACAACAACATCAACAACAACATCAACATCAACATCAA
CAGCACCAGCACCAGCACCAGCAACGGCAACAACAACTACAAAAACATAG
AGTCTGGTGAACATCCAACTTGCCGTGATCGTCTCCGTCGCTGGACCCGC
CGTCCTCCATGCCCTCCTGCTGTTGTCTCCGTCTCCCTCGAACCTCTGGT
CATCCCCTTCCCCCGCACCCTCCCCAGGCTCTAGAAGTCCCTCATCATCG
CTGGGGTCCTCGGCGTCCATGAAGGTACGGTTTGTCCAAACCCTCCAAGT
TGATTCGGTCATCGCCCGAACCGTCAACAGTCATCGCCATGCCGCACTTC
TCGAAAAGGCGAAACCGGTTCGCCTCGCGGCTGTCGAGAATTTCCATGGC
TGCCCCAATCCATTGCGTGATCAGCATACCCACAGCGTGACACGCTCCCA
GCACCACGAGCGCACGAAATGCCTCGCAGGGGGGGTACACTGTGTGTACA
TCGGTCACCCACCTCCCTCCCCACGTGCAAGAATATTTCACGGGGTGCCC
CCCCCCACCACCCCTCGAATCTGAAACAAACTGTTGTTGGGGTCACCCCT
GCCACCTTCGCTCTCGTTATTATCTTGCAGCTGCCCGTGTTTTGGGCTCC
GTTCTTATCAGTGTGAGAATTGGCACACCACCGAAGGCGGGTTCTAGTTC
GTATACGACGTCAGAACTGAGCACATGTTCTTATGGCCATGTTCTTAGTT
TTTGGATTTTTTGAGGCTCAAGTTCTTAACTGTTAAGTTCTTAAGTGGTG
GCGCGTTCTGTACCACGAAACGATTTTCGATCAAAGGACCAATGTGCCAG
GCGTTTCATCGAGTTTACCAAACAAAACAGGTCGAGTCGAAAAATTCTAT
CGTGACATTTTTTTCCTGCAGCCATGCTTCGATCCCCGACGACATACATC
TTCTCTGTTTTTTCTGGCATGCATGGGGAAAGATCAGCGGTTGAGATCTC
TTTTTCGATTTGGGTTTCTCTTGTATCAATGGTAGGCGGCGATGATCGGG
TTTCAGGGCCGCATGGCAGGGCGTCTCGCTACAGAGGCCCGGGAATCACA
TGGTGAGGTTAAACTCTTAGAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17974:2..3276+

>mRNA_Ecto-sp13_S_contig17974.5494.1 ID=mRNA_Ecto-sp13_S_contig17974.5494.1|Name=mRNA_Ecto-sp13_S_contig17974.5494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17974:2..3276+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCACGCAGGACAATCAAGTGTGGCTCAGTAATAATCAACGAGACTACAA
GGATCACTCGAAGCAAGCAGGTGGAAACTGCGAGATGACGCCTGTCGTTG
TCAAGAAGACGGATATGGCGGCGATGATCGGGTTTCAGGGCCGCATGGCA
GGGCGTCTCGCTACAGAGGCCCGGGAATCACATGGTGAGGTTAAACTCTT
AGAGTAG
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