mRNA_Ecto-sp13_S_contig17972.5493.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17972.5493.1
Unique NamemRNA_Ecto-sp13_S_contig17972.5493.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17972.5493.1 vs. uniprot
Match: D7FLS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLS3_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 2.010e-10
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 VDVHLCCMAWSLRSSQPRVQ--KENDLLRGTVPRPTVDKRTSSREDCFDE 144
            +  +LC MAWSLR+  P V+        R T+PRPT DKRTSSR+DCFDE
Sbjct:    1 MSTYLCSMAWSLRAPHPSVKFGARRPFERRTMPRPTFDKRTSSRQDCFDE 50
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17972.5493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLS3_ECTSI2.010e-1056.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17972contigEcto-sp13_S_contig17972:2587..2745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size147
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_005230.1
Cds size126
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462929.2839458-CDS-Ecto-sp13_S_contig17972:2586..26721681462929.2839458-CDS-Ecto-sp13_S_contig17972:2586..2672Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17972 2587..2672 -
1681462929.2952116-CDS-Ecto-sp13_S_contig17972:2684..27241681462929.2952116-CDS-Ecto-sp13_S_contig17972:2684..2724Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17972 2685..2724 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462929.30703-UTR-Ecto-sp13_S_contig17972:2724..27451681462929.30703-UTR-Ecto-sp13_S_contig17972:2724..2745Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17972 2725..2745 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17972.5493.1prot_Ecto-sp13_S_contig17972.5493.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17972 2587..2724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17972.5493.1

>prot_Ecto-sp13_S_contig17972.5493.1 ID=prot_Ecto-sp13_S_contig17972.5493.1|Name=mRNA_Ecto-sp13_S_contig17972.5493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
MAWSLRSSQPRVQKENDLLRGTVPRPTVDKRTSSREDCFDE*
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mRNA from alignment at Ecto-sp13_S_contig17972:2587..2745-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17972.5493.1 ID=mRNA_Ecto-sp13_S_contig17972.5493.1|Name=mRNA_Ecto-sp13_S_contig17972.5493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17972:2587..2745- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGATGTCCACCTATGCTGCATGGCCTGGAGTCTGAGAAGCTCCCAGCC
CAGAGTTCAGAGTTAAATTTGAGAGGAAAACGACCTTTTGAGAGGAACAG
TTCCACGGCCGACTGTTGACAAGCGCACCAGCTCGCGAGAGGATTGTTTC
GATGAATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17972:2587..2745-

>mRNA_Ecto-sp13_S_contig17972.5493.1 ID=mRNA_Ecto-sp13_S_contig17972.5493.1|Name=mRNA_Ecto-sp13_S_contig17972.5493.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17972:2587..2745- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTGGAGTCTGAGAAGCTCCCAGCCCAGAGTTCAGAAGGAAAACGA
CCTTTTGAGAGGAACAGTTCCACGGCCGACTGTTGACAAGCGCACCAGCT
CGCGAGAGGATTGTTTCGATGAATGA
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