mRNA_Ecto-sp13_S_contig17970.5491.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17970.5491.1
Unique NamemRNA_Ecto-sp13_S_contig17970.5491.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17970.5491.1 vs. uniprot
Match: D7G0U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U4_ECTSI)

HSP 1 Score: 293 bits (751), Expect = 1.980e-95
Identity = 142/156 (91.03%), Postives = 144/156 (92.31%), Query Frame = 1 
Query:   10 GHQDECCIDTLPREPPEEGGDVNDHGSPALDLGNHTANGG-RGVCFRHSFQKFLEPPQWESLGSPDAVYFGSGLHLLHMAIMEAERAQGWLTYERDLENAVETYRAAGGAGFRLVFTTSHTIQDSVYQGMFREMVDAYRDGDMEVISKCEGQVRGG 474
            GHQDECCIDTLPREP EEGGD NDHG+PALDLGNHTANGG RGVCFRHSFQKFLEPPQW SLGSPDAVYFG GLHLL M  ME ERAQ WLTYERDLENAVETYRAAGGAGFRLVFTTSHTIQDSVYQG+FREMVDAYRDGDM VISKCEGQVR G
Sbjct:  265 GHQDECCIDTLPREPAEEGGDANDHGTPALDLGNHTANGGGRGVCFRHSFQKFLEPPQWASLGSPDAVYFGRGLHLLPMDNMEGERAQAWLTYERDLENAVETYRAAGGAGFRLVFTTSHTIQDSVYQGLFREMVDAYRDGDMGVISKCEGQVRRG 420
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BLAST of mRNA_Ecto-sp13_S_contig17970.5491.1 vs. uniprot
Match: A0A6H5JXH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH8_9PHAE)

HSP 1 Score: 262 bits (669), Expect = 2.120e-84
Identity = 130/177 (73.45%), Postives = 138/177 (77.97%), Query Frame = 1 
Query:   10 GHQDECCIDTLPREPPEEGGDVNDHGSPALDLGNHTANGGRGVCFRHSFQKFLEPPQWESLGSPDAVYFGSGLHLLHMAIMEAERAQGWLTYERDLENAVETYRAAGGAGFRLVFTTSHTIQ-------------------------DSVYQGMFREMVDAYRDGDMEVISKCEGQV 465
            GHQDECCIDTLPREP EEG D NDHG+PALDL NHT NGGRGVCFR SFQKFLEPP+WESLGSPDAVYFGSGLHLLHM +MEAERAQGWLTYERDLE+AVETYRAAGGAGFR     S TI                          DSVYQG+FREMVDAYRDGD+EVISKCEG++
Sbjct:  187 GHQDECCIDTLPREPAEEGEDANDHGTPALDLHNHTVNGGRGVCFRRSFQKFLEPPEWESLGSPDAVYFGSGLHLLHMHVMEAERAQGWLTYERDLESAVETYRAAGGAGFRGQLQESLTIHAHFFSRMHAVSPRSTSVWVATGGSVDSVYQGLFREMVDAYRDGDVEVISKCEGKM 363
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BLAST of mRNA_Ecto-sp13_S_contig17970.5491.1 vs. uniprot
Match: D7FJP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP0_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 7.170e-23
Identity = 61/155 (39.35%), Postives = 82/155 (52.90%), Query Frame = 1 
Query:   25 CCIDTLPREPPEEGGDVNDHGSPALDLGNHTANGGRGVCFRHSFQKFLEPPQWESLGSPDAVYFGSGLHLLHMAI-------MEAERAQGWLTYERDLENAVETYRAAGGAGFRLVFTTSHTIQDSVYQGMFREMVDAYRDG--DMEVISKCEGQ 462
            CC+DTLP+E   EGG                  GGRG+CF     +FL+P +  +  S DA YFGSGLHLLHM         ME  R Q WL YE  LE  V+  R   G   R+VF T+H I D  +QG ++++  AYR+G  +  + ++C+ Q
Sbjct:   38 CCMDTLPKEDEGEGG------------------GGRGLCFEFDQFRFLDPKR-AARTSVDAYYFGSGLHLLHMYPHWPEMYPMEPLRVQSWLNYESLLEGVVQAVRYKSGPNVRVVFMTNHAIADERFQGEYKDIRAAYREGPGNTTIRAECQDQ 173
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17970.5491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0U4_ECTSI1.980e-9591.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXH8_9PHAE2.120e-8473.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJP0_ECTSI7.170e-2339.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17970contigEcto-sp13_S_contig17970:71..2260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size474
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_002270.2
Cds size474
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462929.1909196-CDS-Ecto-sp13_S_contig17970:70..3421681462929.1909196-CDS-Ecto-sp13_S_contig17970:70..342Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17970 71..342 +
1681462929.200271-CDS-Ecto-sp13_S_contig17970:1306..13781681462929.200271-CDS-Ecto-sp13_S_contig17970:1306..1378Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17970 1307..1378 +
1681462929.2089067-CDS-Ecto-sp13_S_contig17970:2130..22601681462929.2089067-CDS-Ecto-sp13_S_contig17970:2130..2260Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17970 2131..2260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17970.5491.1prot_Ecto-sp13_S_contig17970.5491.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17970 71..2260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17970.5491.1

>prot_Ecto-sp13_S_contig17970.5491.1 ID=prot_Ecto-sp13_S_contig17970.5491.1|Name=mRNA_Ecto-sp13_S_contig17970.5491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=158bp
MRQGHQDECCIDTLPREPPEEGGDVNDHGSPALDLGNHTANGGRGVCFRH
SFQKFLEPPQWESLGSPDAVYFGSGLHLLHMAIMEAERAQGWLTYERDLE
NAVETYRAAGGAGFRLVFTTSHTIQDSVYQGMFREMVDAYRDGDMEVISK
CEGQVRGG
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mRNA from alignment at Ecto-sp13_S_contig17970:71..2260+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17970.5491.1 ID=mRNA_Ecto-sp13_S_contig17970.5491.1|Name=mRNA_Ecto-sp13_S_contig17970.5491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2190bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17970:71..2260+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCAGGGTCACCAAGATGAGTGCTGCATCGACACCTTGCCGCGGGA
GCCCCCAGAAGAGGGCGGGGACGTCAACGACCACGGAAGCCCGGCTCTCG
ATCTAGGCAACCACACAGCCAATGGTGGTCGAGGGGTGTGCTTCCGACAC
TCGTTCCAGAAGTTTTTGGAGCCGCCGCAGTGGGAATCGCTTGGCTCTCC
GGACGCCGTCTACTTCGGCAGCGGCCTGCACTTGTTGCACATGGCTATCA
TGGAAGCAGAGCGAGCGCAAGGGTGAGAGGGGGGAGGCAAACAGGGTTGT
TGCAGTTTTTTTCTCCCCGGATGTGTTTTTCCGTCGTTTGTGATTAACCC
CCAGCCTTTTGGGCAAAGTAGGAGGGAAAGATTGGCCGTCGGTGATCGGT
CCTTTGATAACAATGCTCCGTCTTCTTGATGATGACGCGTGATCAATGGT
CTAACCGCCAATAGACATGCAAATAAGAGTACGCCCCTCCCCCCCCCCCC
CCCCCCCCTGCTTGTTGAGAGAAGGGGGGGGGGGAAGAGCGGCGGGCCTG
CGCGCCGCGTGCGGGGGGGGGGGGCGAAGGGNNNNNNNNNNAGCCTGGTC
CGGTGAGAACCCGGCGTGCTCCGTCCGGCCTTGTAGGGGTGCGAGGTCAA
TGGCCTGACGACTACGGCATGCGCGGCTTTAAGTACACCCAACAAGGCCG
TGAATAGTGGAATTAGTGACCACCCTGTTGTGCTTTTCTCCCCAAGGTCA
AAAGTTAATGCAATGCAGTACTTATTGTTCAAGGACTTGATTCAGTCGTG
TCTTTTAACCCCGATTTGGGTTGAGTTTTGCGAAGTACAACACGAGATCA
CGTCAAAGGCCAATGGAAGCGCGTTGGTTTGGTTTGTTTTTGTATCCTGC
AAAGTTTGGAGTTTGTAAGGGGTAAGTGGAGGCATCAAAGGCAGTTTGTT
TTTCTTAAAATGTTCGCCATCTTCGTTGACCAAGTGTTCGAGGCGCGAGC
TATTGTCCCCGCTACAACGCACACACGCCCTCTGTTTTTGTTTGAACACT
TTATTCCAGCAACCATCAAGACGAGCACCGTCATGTCCCGGCCACGCCTC
CCACTCTCTATTCGCAGGGCAGACGAAACGTATCGCACCGTCCTTTTATG
TTGTTGTTGGTTTCATATTTTTTTTGTTATGTTTCGCCTATTTTTTTTTG
TATATTTTACTCGGGGGGGTTCCGGATCGAACACAGGTGGCTGACCTACG
AGCGGGATCTGGAGAACGCCGTCGAGACTTATCGGGCTGCAGGCGGGGCC
GGATTCAGGTGCACGCGGGCTTCCTAGTCCCCTACCTCTTTGACGCTCCC
CTCTTCCTGACGCCAAAGAAGCTTTTCAGAGAAGTTTGCCCTCTTGTTTC
TTTGCTTCTCTTTGATGTATCCGATCTCGATGTAAGTTCTTCTCGATATA
GTTTTTCCCGTCGGGATGAGGAAAGACCATTGAAACATATGTCGATTCTT
TGAGATTGAGTCTAAAATGGCGGGAAGTTTTCGACACATGGAACGGGTTA
ACAAGGCAGAGGATAGCGCCAAGAATCTATGAAAATGTACGCGCACTTCT
TTTCACGCATGCACGCGATCTCGCCAACATCAGCCAGCGTGTGGGTGGGT
AACAGCAGCAGCAATGTTTGCCCTGCTCTCTCCACCAAGAGAGCAAGCAA
GACGAGCAATGCCTCCCCACCTCACACAACGATGATGGCCGACTTCTGGT
TCATCCTTTTGAAACCTTTGTTGTATACAGCCTGGGCTGGCGAAACCCCG
GCATATCGCTCCGTCCCGGCATTGTAGGGATGCGAGGTCCATGGTGTAGC
GACTACTAAAACAGGACGGGCCACAGCAGTCAAGAAGTATTTCGTCAAGA
ATCAGAAGCTCTATCTCTCACGAAACCGTAGGTTGAAGAAACACAGCTCA
GCGGTGGATCCAACAACGAACTCCATATTTTCTTTTCTCCGGGCCCGTTC
TGTATGGCATGCATTTACCATGAGTATTCCCCCCCCCGCCCCCTGGCGGT
TTTTCTCCAGGCTTGTCTTCACGACTTCCCACACGATTCAGGACAGCGTG
TACCAAGGAATGTTTCGGGAGATGGTCGACGCGTACCGGGACGGTGACAT
GGAGGTCATCTCCAAGTGCGAGGGCCAGGTTCGCGGTGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17970:71..2260+

>mRNA_Ecto-sp13_S_contig17970.5491.1 ID=mRNA_Ecto-sp13_S_contig17970.5491.1|Name=mRNA_Ecto-sp13_S_contig17970.5491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17970:71..2260+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCAGGGTCACCAAGATGAGTGCTGCATCGACACCTTGCCGCGGGA
GCCCCCAGAAGAGGGCGGGGACGTCAACGACCACGGAAGCCCGGCTCTCG
ATCTAGGCAACCACACAGCCAATGGTGGTCGAGGGGTGTGCTTCCGACAC
TCGTTCCAGAAGTTTTTGGAGCCGCCGCAGTGGGAATCGCTTGGCTCTCC
GGACGCCGTCTACTTCGGCAGCGGCCTGCACTTGTTGCACATGGCTATCA
TGGAAGCAGAGCGAGCGCAAGGGTGGCTGACCTACGAGCGGGATCTGGAG
AACGCCGTCGAGACTTATCGGGCTGCAGGCGGGGCCGGATTCAGGCTTGT
CTTCACGACTTCCCACACGATTCAGGACAGCGTGTACCAAGGAATGTTTC
GGGAGATGGTCGACGCGTACCGGGACGGTGACATGGAGGTCATCTCCAAG
TGCGAGGGCCAGGTTCGCGGTGGT
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