mRNA_Ecto-sp13_S_contig17961.5489.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17961.5489.1
Unique NamemRNA_Ecto-sp13_S_contig17961.5489.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17961.5489.1 vs. uniprot
Match: A0A6H5L3A9_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A9_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 2.780e-53
Identity = 102/106 (96.23%), Postives = 102/106 (96.23%), Query Frame = 3 
Query:    3 GGGSSLSQWEASVSWETASFSAGSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPSTRELIARMTTAPPRGDSESGDGTDGDDRA 320
            GGGSSLSQWEASVSWETAS SAGSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPSTRELIARMTTAPPRGD ESG GT GDDRA
Sbjct:  410 GGGSSLSQWEASVSWETASLSAGSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPSTRELIARMTTAPPRGDGESGGGTHGDDRA 515
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BLAST of mRNA_Ecto-sp13_S_contig17961.5489.1 vs. uniprot
Match: D7FXM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM6_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 1.220e-52
Identity = 101/106 (95.28%), Postives = 101/106 (95.28%), Query Frame = 3 
Query:    3 GGGSSLSQWEASVSWETASFSAGSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPSTRELIARMTTAPPRGDSESGDGTDGDDRA 320
            GG SSLSQWEASVSWET S SAGSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPSTRELIARMTTAP RGD ESGDGTDGDDRA
Sbjct:  411 GGSSSLSQWEASVSWETTSLSAGSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPSTRELIARMTTAPRRGDGESGDGTDGDDRA 516
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17961.5489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3A9_9PHAE2.780e-5396.23Rab3 GTPase-activating protein catalytic subunit n... [more]
D7FXM6_ECTSI1.220e-5295.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17961contigEcto-sp13_S_contig17961:184..2176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size467
Hectar predicted targeting categoryother localisation
Exons3
Cds size249
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462929.1112986-UTR-Ecto-sp13_S_contig17961:183..2581681462929.1112986-UTR-Ecto-sp13_S_contig17961:183..258Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17961 184..258 -
1681462929.1465976-UTR-Ecto-sp13_S_contig17961:1299..13921681462929.1465976-UTR-Ecto-sp13_S_contig17961:1299..1392Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17961 1300..1392 -
1681462929.15745-UTR-Ecto-sp13_S_contig17961:2126..21761681462929.15745-UTR-Ecto-sp13_S_contig17961:2126..2176Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17961 2127..2176 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462929.123691-CDS-Ecto-sp13_S_contig17961:258..4771681462929.123691-CDS-Ecto-sp13_S_contig17961:258..477Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17961 259..477 -
1681462929.136174-CDS-Ecto-sp13_S_contig17961:1269..12991681462929.136174-CDS-Ecto-sp13_S_contig17961:1269..1299Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17961 1270..1299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17961.5489.1prot_Ecto-sp13_S_contig17961.5489.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17961 259..1299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17961.5489.1

>prot_Ecto-sp13_S_contig17961.5489.1 ID=prot_Ecto-sp13_S_contig17961.5489.1|Name=mRNA_Ecto-sp13_S_contig17961.5489.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
MADICSADAEAELSSARERARHIGAVLGPSTRELIARMTTAPPRGDSESG
DGTDGDDRAGAAAASQSRIAPHRVARATALFF*
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mRNA from alignment at Ecto-sp13_S_contig17961:184..2176-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17961.5489.1 ID=mRNA_Ecto-sp13_S_contig17961.5489.1|Name=mRNA_Ecto-sp13_S_contig17961.5489.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1993bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17961:184..2176- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGTGGGGGCAGCTCGTTGTCGCAGTGGGAAGCCTCTGTGTCTTGGGAG
GTGCGTCGCAAGCACGCTGCTGCTTGCTGTGGTGTAGAGGCGGCGATGAC
CCGCGTTGCTTGCTGCGCAGTGTTGTTCTTGTGCAAAGGTTTCTTCACGC
TGAACGGATATAGGTACACGCTTCGGTCGTTAGTCCGCTTCGCGTGCCCC
CCCCCCCCTCCCCCCCTCCCCATGAGAACCTGTGGTGTTCGATCGGGCGA
AGTACACGCGTTATCTTGGTTCGACATGTTGTGGGCTTTTCCGTTTCTTG
CGTCAACTGCAGGACTAAGACCCCCCGCCCCTTCCATCTTCAACAGAAGG
GAACCTATATAGAAGTATGGCAGTGTGAGAATGTAGCGGAAGAATCTGTG
CTCCGGACGGCACCGTTGCGTCTTGAAGGGGGTCGTGATGTCTTGATCAC
TGGTCGCGAGTGTTGGACCTAGCGACAAATGTACCCCCCCCCCCCTCGCA
TCTCCCATGCGCCAACATCACGGTGCATGTAGCGTCTAGGAGCCCCTCTA
TGCGTCCAAGTATCACGCACTACCCCCACTTTCCCCCGTAAGGCGTCACT
GTCGACAGTCTCCTACTGCAGGCAAGCCAAATCCCCCGGCGCCCTCCCCC
TTGCTCTGGTCTTTGTGCTGCTCGAAGAAGAAGCCATACCTCGCATCACA
AGCGGACAGCAGCACTCCACCCCGCAACACCCATGTCCGCCGCCGCCGCC
GCCGCCGCCGCCGCCGTTGCTCTTGCTGCTGTAGACGGCAAGCTTCTCCG
CCGGGTCCCTCGGCTTGAAGCTCCGGCTTCTTCTTGCCGTGTACGTGCAC
TGCTTGGCGCTAGGGGGTGACCTCCTCATGGCGGACATCTGCAGCGCCGA
CGCCGAGGTTGGTTCGTTCTCACATGACATGTTGCAGTGTTTCGGGGGGG
GGGGGGGCAGTTGGCGTGATGTCCTGGATGTCCTCCTGCTGAGAGCATTC
GAGATGTAGATGGCGCTGACCGGGAAGGCTTGAGCTGTCTATTTGACGAC
CCCCCCCCCAAACCGGGGAGTACCATGTGTCGATTGTCTTCATGTCCTCT
TGCTGAGAGTATTGGAGGTCTAGATGGCGCTGTATCCGGGACGACATGAG
CTGCTCCGACGACCCCAACCCCTCCGGGGGGCACATTCGGTCAGCCATCT
TGATGTCCTCCTGCTGAAAGTATTGAAGGTTTAGATGGCGCCGGCCAGGA
AGAGCTATACAGCAGGGAACAAGATTGTTATTGGGGAACCAACCTCCGTT
GTGATTCGTTCCGACTGCTATGAATTCAGCAAAGTGTCAGAGCTTCTGTC
TGTGATCCCGCGAAAGGTCTTGGCAGGGAGGGCCGCCCTGCTTTCCCCGG
TGGCGAAGGTCTCGAAACTCTCGTGATGCGCCTAACCCTAAGTCGATTTG
CTGGCGTCGTCACATCTTTAACGCTGCTCGATAAACGTTGTGCTGCTGAA
ATATGTGTGGTGGGCTTTGTGCTTATTGCAAACATCAACTTCAGCAGCAG
CAGCAGCAGCAGCTGTAGCAGCACCTTCTCCGCAGGGTAGATGTAGGAGC
GGCATCAACGATAACGGCAGCAGCAACAGCAGCGGCAGCAGCAGCAGCGG
TAGCAACAGTATCGACAACGACGGCCACCCCAACAATCAATCTATCCAGG
CCGAACTGTCGTCAGCGAGGGAGAGGGCGAGACACATCGGGGCCGTTCTC
GGGCCGAGCACGAGGGAGCTCATCGCAAGGATGACCACGGCGCCTCCGAG
AGGCGACAGCGAGAGCGGCGACGGTACGGACGGCGACGACCGGGCAGGTG
CGGCGGCAGCGAGTCAGAGTCGTATCGCACCACACCGTGTAGCACGAGCA
ACCGCTCTCTTTTTTTAACGGACCCGATCGGTGGGGCGTTTTTCTTGTGT
CTGTCGTGTTCGGTTTAACTATTACTGCTGTAGTTCTTCGTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17961:184..2176-

>mRNA_Ecto-sp13_S_contig17961.5489.1 ID=mRNA_Ecto-sp13_S_contig17961.5489.1|Name=mRNA_Ecto-sp13_S_contig17961.5489.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17961:184..2176- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGACATCTGCAGCGCCGACGCCGAGGCCGAACTGTCGTCAGCGAG
GGAGAGGGCGAGACACATCGGGGCCGTTCTCGGGCCGAGCACGAGGGAGC
TCATCGCAAGGATGACCACGGCGCCTCCGAGAGGCGACAGCGAGAGCGGC
GACGGTACGGACGGCGACGACCGGGCAGGTGCGGCGGCAGCGAGTCAGAG
TCGTATCGCACCACACCGTGTAGCACGAGCAACCGCTCTCTTTTTTTAA
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