prot_Ecto-sp13_S_contig17961.5490.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17961.5490.1
Unique Nameprot_Ecto-sp13_S_contig17961.5490.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length107
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17961.5490.1 vs. uniprot
Match: A0A6H5L3A9_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A9_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 1.600e-47
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 0 
Query:    1 NEWRAGFLRERSHLCRGTRECAVRALLASARGEHGVPAWGPEGDPLDGVRLSAVWRGIGGDRPLPHAPLELLRDDLSPPGG 81
            NEWRAGFLRERSHLCRGTRECAVRALLASARGEHG+PAWGPEGDPLDGVRLSAVWRG+GGDRPLPH PLELLRD+LSPPGG
Sbjct:  331 NEWRAGFLRERSHLCRGTRECAVRALLASARGEHGIPAWGPEGDPLDGVRLSAVWRGLGGDRPLPHTPLELLRDNLSPPGG 411
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BLAST of mRNA_Ecto-sp13_S_contig17961.5490.1 vs. uniprot
Match: D7FXM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM6_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 3.070e-45
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 0 
Query:    2 EWRAGFLRERSHLCRGTRECAVRALLASARGEHGVPAWGPEGDPLDGVRLSAVWRGIGGDRPLPHAPLELLRDDLSPPGGA 82
            EWRAGFLRERSHLCRGTRECAVR LLASARGEHG+PAWGPEGDPLDGVRLSAVWRG+GGDRPLPHAPLELL D LSPPGG+
Sbjct:  333 EWRAGFLRERSHLCRGTRECAVRTLLASARGEHGIPAWGPEGDPLDGVRLSAVWRGLGGDRPLPHAPLELLCDYLSPPGGS 413
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17961.5490.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3A9_9PHAE1.600e-4795.06Rab3 GTPase-activating protein catalytic subunit n... [more]
D7FXM6_ECTSI3.070e-4592.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17961contigEcto-sp13_S_contig17961:1359..2973 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17961.5490.1mRNA_Ecto-sp13_S_contig17961.5490.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17961 184..2973 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17961.5490.1 ID=prot_Ecto-sp13_S_contig17961.5490.1|Name=mRNA_Ecto-sp13_S_contig17961.5490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
NEWRAGFLRERSHLCRGTRECAVRALLASARGEHGVPAWGPEGDPLDGVR
LSAVWRGIGGDRPLPHAPLELLRDDLSPPGGAPARCRSGKPLCLGRRQAS
PPGPSA*
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