mRNA_Ecto-sp13_S_contig17961.5490.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17961.5490.1
Unique NamemRNA_Ecto-sp13_S_contig17961.5490.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17961.5490.1 vs. uniprot
Match: D7FXM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM6_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 1.670e-51
Identity = 100/111 (90.09%), Postives = 102/111 (91.89%), Query Frame = 3 
Query:  225 FVPPRWGPRSLSQWEASVSWETASFSAGSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPSTRELIARMTTAPPRGDSESGDGTDGDDRA 557
            ++ P  G  SLSQWEASVSWET S SAGSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPSTRELIARMTTAP RGD ESGDGTDGDDRA
Sbjct:  406 YLSPPGGSSSLSQWEASVSWETTSLSAGSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPSTRELIARMTTAPRRGDGESGDGTDGDDRA 516
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BLAST of mRNA_Ecto-sp13_S_contig17961.5490.1 vs. uniprot
Match: A0A6H5L3A9_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A9_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 1.170e-50
Identity = 100/108 (92.59%), Postives = 100/108 (92.59%), Query Frame = 3 
Query:  234 PRWGPRSLSQWEASVSWETASFSAGSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPSTRELIARMTTAPPRGDSESGDGTDGDDRA 557
            P  G  SLSQWEASVSWETAS SAGSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPSTRELIARMTTAPPRGD ESG GT GDDRA
Sbjct:  408 PPGGGSSLSQWEASVSWETASLSAGSLGLKLRLLLAVYVHCLALGGDLLMADICSADAEAELSSARERARHIGAVLGPSTRELIARMTTAPPRGDGESGGGTHGDDRA 515
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17961.5490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXM6_ECTSI1.670e-5190.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3A9_9PHAE1.170e-5092.59Rab3 GTPase-activating protein catalytic subunit n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17961contigEcto-sp13_S_contig17961:184..2973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size706
Hectar predicted targeting categoryother localisation
Exons5
Cds size321
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17961.5490.1prot_Ecto-sp13_S_contig17961.5490.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17961 1359..2973 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462929.0164275-UTR-Ecto-sp13_S_contig17961:183..4771681462929.0164275-UTR-Ecto-sp13_S_contig17961:183..477Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17961 184..477 -
1681462929.0260856-UTR-Ecto-sp13_S_contig17961:1269..13581681462929.0260856-UTR-Ecto-sp13_S_contig17961:1269..1358Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17961 1270..1358 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462929.0351985-CDS-Ecto-sp13_S_contig17961:1358..13921681462929.0351985-CDS-Ecto-sp13_S_contig17961:1358..1392Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17961 1359..1392 -
1681462929.0442126-CDS-Ecto-sp13_S_contig17961:2126..21631681462929.0442126-CDS-Ecto-sp13_S_contig17961:2126..2163Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17961 2127..2163 -
1681462929.0542266-CDS-Ecto-sp13_S_contig17961:2173..22941681462929.0542266-CDS-Ecto-sp13_S_contig17961:2173..2294Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17961 2174..2294 -
1681462929.0689418-CDS-Ecto-sp13_S_contig17961:2844..29731681462929.0689418-CDS-Ecto-sp13_S_contig17961:2844..2973Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17961 2845..2973 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17961.5490.1

>prot_Ecto-sp13_S_contig17961.5490.1 ID=prot_Ecto-sp13_S_contig17961.5490.1|Name=mRNA_Ecto-sp13_S_contig17961.5490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
NEWRAGFLRERSHLCRGTRECAVRALLASARGEHGVPAWGPEGDPLDGVR
LSAVWRGIGGDRPLPHAPLELLRDDLSPPGGAPARCRSGKPLCLGRRQAS
PPGPSA*
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mRNA from alignment at Ecto-sp13_S_contig17961:184..2973-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17961.5490.1 ID=mRNA_Ecto-sp13_S_contig17961.5490.1|Name=mRNA_Ecto-sp13_S_contig17961.5490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2790bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17961:184..2973- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGAGTGGCGGGCGGGTTTCTTGCGGGAACGGTCGCACTTGTGCCGGGG
GACGAGAGAGTGCGCCGTCCGGGCGCTGTTGGCCTCAGCGCGGGGGGAGC
ACGGCGTCCCCGCGTGGGGGCCAGAGGGGGTGAGGGAGCGGGTTGTTGCC
TATGCCAGTACTGCTCTTGTCCGGCAAAATAACGCCGGCTAGGAACGCGT
GTATGCACCCAAGTTGTTTTGCAGCAAGTTTTGGTGTTGGAGCCGACGGG
GGGTGATTTGGCACCAGGTCTTGGGGGTGGCACCTCCTCACCTTGCGAAA
CATATATGTGTTTGTACTCTTTGCCACGTTTTTTGTTGTGTCCTGGGGAA
TTCCCTGCGCCTCATTTCAACATGGAGAGAAGACAGCAGTTTCGCCAACT
CAATTTGCATGGCTTCGCCCCCACCCATCCCCGCCTTGTTGTCATGACAC
GGGCCTCTTGCGCTTCGTTGATCAACCGAGGACGTGAGGTCGATTTAGCC
GCCAAGCTATTGCAAGACTTTTGAGACCCCCTCCCCTCCCCCCCCCCCCC
CCGAACATTTCTCTCTTCCGCCCATCTCTCTGTCCCTCTCTCTCTCCCTC
TTTCTCTCTCTCTCACTTCGTCTCTCTCCCTTTGGTTCTCTCTCCCTCTT
CCTGCACCCTGTTGTTGTGTGCAACTCAGGACCCGCTAGACGGAGTTCGA
CTATCGGCGGTGTGGCGGGGGATCGGCGGAGATCGACCCCTCCCGCACGC
TCCCCTGGAGCTCCTCCGTGACGATTTGTCCCCCCCCGGTGGGGCCCCCG
GTGGGGGCAGCTCGTTGTCGCAGTGGGAAGCCTCTGTGTCTTGGGAGGTG
CGTCGCAAGCACGCTGCTGCTTGCTGTGGTGTAGAGGCGGCGATGACCCG
CGTTGCTTGCTGCGCAGTGTTGTTCTTGTGCAAAGGTTTCTTCACGCTGA
ACGGATATAGGTACACGCTTCGGTCGTTAGTCCGCTTCGCGTGCCCCCCC
CCCCCTCCCCCCCTCCCCATGAGAACCTGTGGTGTTCGATCGGGCGAAGT
ACACGCGTTATCTTGGTTCGACATGTTGTGGGCTTTTCCGTTTCTTGCGT
CAACTGCAGGACTAAGACCCCCCGCCCCTTCCATCTTCAACAGAAGGGAA
CCTATATAGAAGTATGGCAGTGTGAGAATGTAGCGGAAGAATCTGTGCTC
CGGACGGCACCGTTGCGTCTTGAAGGGGGTCGTGATGTCTTGATCACTGG
TCGCGAGTGTTGGACCTAGCGACAAATGTACCCCCCCCCCCCTCGCATCT
CCCATGCGCCAACATCACGGTGCATGTAGCGTCTAGGAGCCCCTCTATGC
GTCCAAGTATCACGCACTACCCCCACTTTCCCCCGTAAGGCGTCACTGTC
GACAGTCTCCTACTGCAGGCAAGCCAAATCCCCCGGCGCCCTCCCCCTTG
CTCTGGTCTTTGTGCTGCTCGAAGAAGAAGCCATACCTCGCATCACAAGC
GGACAGCAGCACTCCACCCCGCAACACCCATGTCCGCCGCCGCCGCCGCC
GCCGCCGCCGCCGTTGCTCTTGCTGCTGTAGACGGCAAGCTTCTCCGCCG
GGTCCCTCGGCTTGAAGCTCCGGCTTCTTCTTGCCGTGTACGTGCACTGC
TTGGCGCTAGGGGGTGACCTCCTCATGGCGGACATCTGCAGCGCCGACGC
CGAGGTTGGTTCGTTCTCACATGACATGTTGCAGTGTTTCGGGGGGGGGG
GGGGCAGTTGGCGTGATGTCCTGGATGTCCTCCTGCTGAGAGCATTCGAG
ATGTAGATGGCGCTGACCGGGAAGGCTTGAGCTGTCTATTTGACGACCCC
CCCCCCAAACCGGGGAGTACCATGTGTCGATTGTCTTCATGTCCTCTTGC
TGAGAGTATTGGAGGTCTAGATGGCGCTGTATCCGGGACGACATGAGCTG
CTCCGACGACCCCAACCCCTCCGGGGGGCACATTCGGTCAGCCATCTTGA
TGTCCTCCTGCTGAAAGTATTGAAGGTTTAGATGGCGCCGGCCAGGAAGA
GCTATACAGCAGGGAACAAGATTGTTATTGGGGAACCAACCTCCGTTGTG
ATTCGTTCCGACTGCTATGAATTCAGCAAAGTGTCAGAGCTTCTGTCTGT
GATCCCGCGAAAGGTCTTGGCAGGGAGGGCCGCCCTGCTTTCCCCGGTGG
CGAAGGTCTCGAAACTCTCGTGATGCGCCTAACCCTAAGTCGATTTGCTG
GCGTCGTCACATCTTTAACGCTGCTCGATAAACGTTGTGCTGCTGAAATA
TGTGTGGTGGGCTTTGTGCTTATTGCAAACATCAACTTCAGCAGCAGCAG
CAGCAGCAGCTGTAGCAGCACCTTCTCCGCAGGGTAGATGTAGGAGCGGC
ATCAACGATAACGGCAGCAGCAACAGCAGCGGCAGCAGCAGCAGCGGTAG
CAACAGTATCGACAACGACGGCCACCCCAACAATCAATCTATCCAGGCCG
AACTGTCGTCAGCGAGGGAGAGGGCGAGACACATCGGGGCCGTTCTCGGG
CCGAGCACGAGGGAGCTCATCGCAAGGATGACCACGGCGCCTCCGAGAGG
CGACAGCGAGAGCGGCGACGGTACGGACGGCGACGACCGGGCAGGTGCGG
CGGCAGCGAGTCAGAGTCGTATCGCACCACACCGTGTAGCACGAGCAACC
GCTCTCTTTTTTTAACGGACCCGATCGGTGGGGCGTTTTTCTTGTGTCTG
TCGTGTTCGGTTTAACTATTACTGCTGTAGTTCTTCGTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17961:184..2973-

>mRNA_Ecto-sp13_S_contig17961.5490.1 ID=mRNA_Ecto-sp13_S_contig17961.5490.1|Name=mRNA_Ecto-sp13_S_contig17961.5490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17961:184..2973- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGAGTGGCGGGCGGGTTTCTTGCGGGAACGGTCGCACTTGTGCCGGGG
GACGAGAGAGTGCGCCGTCCGGGCGCTGTTGGCCTCAGCGCGGGGGGAGC
ACGGCGTCCCCGCGTGGGGGCCAGAGGGGGACCCGCTAGACGGAGTTCGA
CTATCGGCGGTGTGGCGGGGGATCGGCGGAGATCGACCCCTCCCGCACGC
TCCCCTGGAGCTCCTCCGTGACGATTTGTCCCCCCCCGGTGGGGCCCCCG
CTCGTTGTCGCAGTGGGAAGCCTCTGTGTCTTGGGAGACGGCAAGCTTCT
CCGCCGGGTCCCTCGGCTTGA
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