mRNA_Ecto-sp13_S_contig17958.5485.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17958.5485.1 vs. uniprot
Match: D8LGG4_ECTSI (2,4-dienoyl-CoA reductase ((3E)-enoyl-CoA-producing) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGG4_ECTSI) HSP 1 Score: 142 bits (357), Expect = 5.040e-40 Identity = 73/78 (93.59%), Postives = 74/78 (94.87%), Query Frame = 1
Query: 4 DDATFDQIPLGRMGTTFDIGMGAVFLVSSAASYVSGDTLVVDGAEWMYKEPLLKPEAVSRMSRAVEQRSRAMGPTSKL 237
DDA IPLGRMGTTFDIGMGAVFLVSSAASYVSGDTLVVDGAEWMYKEPLLKPEAVSRMSRAVEQRSR+MGPTSKL
Sbjct: 215 DDAN-KHIPLGRMGTTFDIGMGAVFLVSSAASYVSGDTLVVDGAEWMYKEPLLKPEAVSRMSRAVEQRSRSMGPTSKL 291
BLAST of mRNA_Ecto-sp13_S_contig17958.5485.1 vs. uniprot
Match: K0RC56_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RC56_THAOC) HSP 1 Score: 89.7 bits (221), Expect = 1.630e-21 Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 1
Query: 1 LDDATFDQIPLGRMGTTFDIGMGAVFL-VSSAASYVSGDTLVVDGAEWMYKEPLLKPEAVSRMSRAVEQRSRAMGP--TSKL 237
+ D + IPLGR+GTTFDIGM A++L + SYVSG T+VVDGAEW+YK P++ E V +SR VE +SRA+ P TSKL
Sbjct: 31 VSDMISEGIPLGRLGTTFDIGMAALYLSCEGSGSYVSGTTIVVDGAEWLYKPPMVPKEMVKELSRKVEAKSRALQPKLTSKL 112
BLAST of mRNA_Ecto-sp13_S_contig17958.5485.1 vs. uniprot
Match: A0A7R9V4F3_9CHLO (2,4-dienoyl-CoA reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V4F3_9CHLO) HSP 1 Score: 88.6 bits (218), Expect = 2.850e-19 Identity = 43/67 (64.18%), Postives = 53/67 (79.10%), Query Frame = 1
Query: 22 QIPLGRMGTTFDIGMGAVFLVSSAASYVSGDTLVVDGAEWMYKEPLLKPEAVSRMSRAVEQRSRAMG 222
IPLGRMGT +DIGM VFL S AAS+V+GDTLVVDGA WM+K ++ EAVS++SR VE+ SR +G
Sbjct: 240 SIPLGRMGTKWDIGMACVFLASPAASFVTGDTLVVDGAHWMWKPQVVPREAVSKVSRGVEKSSRDVG 306
BLAST of mRNA_Ecto-sp13_S_contig17958.5485.1 vs. uniprot
Match: A0A7S2KZL5_9STRA (2,4-dienoyl-CoA reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KZL5_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 6.080e-19 Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query: 19 DQIPLGRMGTTFDIGMGAVFLVSSAASYVSGDTLVVDGAEWMYKEPLLKPEAVSRMSRAVEQRSRAMGP--TSKL 237
+ IPLGR+G FDIGM AVFL S A Y++GD LVVDG EW+YK P++ E V+ +SR VE +SRA P SKL
Sbjct: 221 EGIPLGRLGKAFDIGMAAVFLGSEAGDYITGDILVVDGGEWLYKPPMVPKEMVAELSRKVEAKSRAQRPKMVSKL 295
BLAST of mRNA_Ecto-sp13_S_contig17958.5485.1 vs. uniprot
Match: A0A836CR02_9STRA (2,4-dienoyl-CoA reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR02_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 6.160e-19 Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 1
Query: 19 DQIPLGRMGTTFDIGMGAVFLVSSAASYVSGDTLVVDGAEWMYKEPLLKPEAVSRMSRAVEQRSRAMG-------PTSKL 237
+++PLGRMG T DI + AV+L S A +YVSG TLVVDGAEW+++ P + P VS +SRA E+ SRAMG P SKL
Sbjct: 217 ERVPLGRMGATRDIALAAVYLCSGAGAYVSGHTLVVDGAEWLWRAPAVAPREVSALSRAAERGSRAMGVQQQQQQPKSKL 296
BLAST of mRNA_Ecto-sp13_S_contig17958.5485.1 vs. uniprot
Match: B8C746_THAPS (2,4-dienoyl-CoA reductase ((3E)-enoyl-CoA-producing) (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C746_THAPS) HSP 1 Score: 85.9 bits (211), Expect = 2.410e-18 Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 1
Query: 1 LDDATFDQIPLGRMGTTFDIGMGAVFLVSSAAS-YVSGDTLVVDGAEWMYKEPLLKPEAVSRMSRAVEQRSRAMGP-TSKL 237
+++ +++P+GR+G FDIGM AV+L A+ YVSGD LVVDG EW+YK P++ E VS +SR VE +SRA+ P SKL
Sbjct: 218 VEEMIAERVPMGRLGRAFDIGMAAVYLACDASGGYVSGDVLVVDGGEWLYKPPMVPKELVSELSRKVEAKSRALRPMASKL 298
BLAST of mRNA_Ecto-sp13_S_contig17958.5485.1 vs. uniprot
Match: A0A059LPD4_9CHLO (2,4-dienoyl-CoA reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LPD4_9CHLO) HSP 1 Score: 84.7 bits (208), Expect = 5.990e-18 Identity = 41/79 (51.90%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 1 LDDATFDQIPLGRMGTTFDIGMGAVFLVSSAASYVSGDTLVVDGAEWMYKEPLLKPEAVSRMSRAVEQRSRAMGPTSKL 237
+ D IP+GRMG +I ++L SSA S+VSG TLVVDG EWMY+ PL EAV+++SR VE +SRA+G SK+
Sbjct: 213 MQDQMARAIPVGRMGERCEIAYACLYLASSAGSFVSGHTLVVDGGEWMYRPPLAPREAVAQLSRGVESKSRAVGVQSKM 291
BLAST of mRNA_Ecto-sp13_S_contig17958.5485.1 vs. uniprot
Match: A0A250WYM4_9CHLO (2,4-dienoyl-CoA reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WYM4_9CHLO) HSP 1 Score: 85.1 bits (209), Expect = 1.640e-17 Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 1
Query: 7 DATFDQIPLGRMGTTFDIGMGAVFLVSSAASYVSGDTLVVDGAEWMYKEPLLKPEAVSRMSRAVEQRSRAMG 222
D IP+GRMG +DIGM VFL SSAAS++SGDTLVVDGA WM+K P++ VS++SR VE + A G
Sbjct: 215 DLIVSSIPMGRMGKKWDIGMACVFLSSSAASFISGDTLVVDGANWMWKPPVVPRSVVSKVSRGVEAKITAPG 286
BLAST of mRNA_Ecto-sp13_S_contig17958.5485.1 vs. uniprot
Match: A0A7S3R4Z9_DUNTE (2,4-dienoyl-CoA reductase ((3E)-enoyl-CoA-producing) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R4Z9_DUNTE) HSP 1 Score: 82.8 bits (203), Expect = 3.420e-17 Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 1
Query: 22 QIPLGRMGTTFDIGMGAVFLVSSAASYVSGDTLVVDGAEWMYKEPLLKPEAVSRMSRAVEQRSRAMG 222
++PLGRMG+ +DI M FL S AA+Y+SGDT+VVDGA WM+ PL+ V+++SR+VE +SRA G
Sbjct: 219 RVPLGRMGSKWDIAMACTFLASPAAAYISGDTMVVDGASWMWDPPLVPRHVVAKVSRSVESQSRAEG 285
BLAST of mRNA_Ecto-sp13_S_contig17958.5485.1 vs. uniprot
Match: I0YKX5_COCSC (2,4-dienoyl-CoA reductase ((3E)-enoyl-CoA-producing) n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YKX5_COCSC) HSP 1 Score: 82.4 bits (202), Expect = 5.110e-17 Identity = 38/66 (57.58%), Postives = 53/66 (80.30%), Query Frame = 1
Query: 25 IPLGRMGTTFDIGMGAVFLVSSAASYVSGDTLVVDGAEWMYKEPLLKPEAVSRMSRAVEQRSRAMG 222
IP+GR+G+ +DI + AVFL SSAA +++GDTLVVDGA WM+++P + E VS+ SR VE +SRA+G
Sbjct: 227 IPIGRVGSKWDIAIAAVFLCSSAARHITGDTLVVDGAAWMWRQPAVPREFVSKASRGVEAKSRAVG 292 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17958.5485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17958.5485.1 >prot_Ecto-sp13_S_contig17958.5485.1 ID=prot_Ecto-sp13_S_contig17958.5485.1|Name=mRNA_Ecto-sp13_S_contig17958.5485.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp LDDATFDQIPLGRMGTTFDIGMGAVFLVSSAASYVSGDTLVVDGAEWMYKback to top mRNA from alignment at Ecto-sp13_S_contig17958:774..1693+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17958.5485.1 ID=mRNA_Ecto-sp13_S_contig17958.5485.1|Name=mRNA_Ecto-sp13_S_contig17958.5485.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=920bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17958:774..1693+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17958:774..1693+ >mRNA_Ecto-sp13_S_contig17958.5485.1 ID=mRNA_Ecto-sp13_S_contig17958.5485.1|Name=mRNA_Ecto-sp13_S_contig17958.5485.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17958:774..1693+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |