mRNA_Ecto-sp13_S_contig17957.5484.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17957.5484.1
Unique NamemRNA_Ecto-sp13_S_contig17957.5484.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17957.5484.1 vs. uniprot
Match: D7FXZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ4_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 8.850e-60
Identity = 97/116 (83.62%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:    1 MSDLCRMTSGGQNLPAVEQKDRVDKAVAALQQLFLGRDGPRQAAPAHDVRVLTLLEKVALSGPGESGNLDEVATVLSAALSKLSLGADPGCKRDDETEEMEDQTENRTQIPGQMCG 348
            MS+LCRMT GGQN+PAVE KDRVD+AVAAL+QL LG DGPRQAAPA D+RVLTLLEKV LSGPGESGNL+EVATVLSAAL KLSLGADPGCKRDDE EEMED+T++RTQI GQM G
Sbjct:    1 MSELCRMTIGGQNVPAVELKDRVDQAVAALEQLSLGGDGPRQAAPAQDLRVLTLLEKVTLSGPGESGNLEEVATVLSAALFKLSLGADPGCKRDDEKEEMEDKTQHRTQISGQMYG 116
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17957.5484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXZ4_ECTSI8.850e-6083.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17957contigEcto-sp13_S_contig17957:679..1381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size411
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_002510.1
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462928.7255902-CDS-Ecto-sp13_S_contig17957:678..10551681462928.7255902-CDS-Ecto-sp13_S_contig17957:678..1055Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17957 679..1055 +
1681462928.7358167-CDS-Ecto-sp13_S_contig17957:1347..13811681462928.7358167-CDS-Ecto-sp13_S_contig17957:1347..1381Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17957 1348..1381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17957.5484.1prot_Ecto-sp13_S_contig17957.5484.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17957 679..1381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17957.5484.1

>prot_Ecto-sp13_S_contig17957.5484.1 ID=prot_Ecto-sp13_S_contig17957.5484.1|Name=mRNA_Ecto-sp13_S_contig17957.5484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
MSDLCRMTSGGQNLPAVEQKDRVDKAVAALQQLFLGRDGPRQAAPAHDVR
VLTLLEKVALSGPGESGNLDEVATVLSAALSKLSLGADPGCKRDDETEEM
EDQTENRTQIPGQMCGTLRSICPAGGRLSGASPSRN*
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mRNA from alignment at Ecto-sp13_S_contig17957:679..1381+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17957.5484.1 ID=mRNA_Ecto-sp13_S_contig17957.5484.1|Name=mRNA_Ecto-sp13_S_contig17957.5484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=703bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17957:679..1381+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGACCTCTGCCGCATGACGAGCGGAGGCCAAAACCTTCCGGCCGT
GGAACAGAAGGACCGCGTCGACAAAGCGGTTGCCGCACTGCAGCAACTGT
TCCTAGGTCGGGATGGGCCCCGCCAGGCAGCACCCGCACATGATGTCAGG
GTGTTGACCCTGCTGGAGAAGGTAGCCCTCTCGGGCCCCGGAGAGAGCGG
GAACCTCGACGAGGTAGCGACGGTCCTGTCGGCCGCCTTGTCCAAGTTGT
CGCTTGGCGCCGACCCAGGCTGCAAGAGAGACGACGAGACGGAAGAGATG
GAGGACCAGACTGAGAACCGCACCCAAATTCCTGGGCAAATGTGTGGGAC
TCTGCGAAGCATCTGCCCAGCAGGAGGGTGAGTACGGGTTAGGTGTTGTG
TGGCTTCATTGCTACTGTATGACAGGGACTTGGGGCTCGCCGCGGGATGT
CCGAGCACCTGTCGATTTTCCCCTGCTGCTTCTTGTCGCTGTCGCCACAA
GGGTGTAAAATACATCTTCACACAAGTTCCGACCTTGAGCTGCACACAAG
CACATGAAGCACATTGAGATACGGTGAATCCGAGCTTTCCTCTCTCCACC
TTGTTGTGACCGTTTGTTTTTCTCTCTACCGCCTCCTCGCTTATCCCACC
GTGTTCTCTGTCCGGACAGCCGACTCTCGGGGGCCTCTCCCTCCCGTAAC
TGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17957:679..1381+

>mRNA_Ecto-sp13_S_contig17957.5484.1 ID=mRNA_Ecto-sp13_S_contig17957.5484.1|Name=mRNA_Ecto-sp13_S_contig17957.5484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17957:679..1381+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGACCTCTGCCGCATGACGAGCGGAGGCCAAAACCTTCCGGCCGT
GGAACAGAAGGACCGCGTCGACAAAGCGGTTGCCGCACTGCAGCAACTGT
TCCTAGGTCGGGATGGGCCCCGCCAGGCAGCACCCGCACATGATGTCAGG
GTGTTGACCCTGCTGGAGAAGGTAGCCCTCTCGGGCCCCGGAGAGAGCGG
GAACCTCGACGAGGTAGCGACGGTCCTGTCGGCCGCCTTGTCCAAGTTGT
CGCTTGGCGCCGACCCAGGCTGCAAGAGAGACGACGAGACGGAAGAGATG
GAGGACCAGACTGAGAACCGCACCCAAATTCCTGGGCAAATGTGTGGGAC
TCTGCGAAGCATCTGCCCAGCAGGAGGCCGACTCTCGGGGGCCTCTCCCT
CCCGTAACTGA
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