mRNA_Ecto-sp13_S_contig17956.5483.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17956.5483.1
Unique NamemRNA_Ecto-sp13_S_contig17956.5483.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17956.5483.1 vs. uniprot
Match: A0A6H5L0Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z0_9PHAE)

HSP 1 Score: 404 bits (1038), Expect = 4.540e-139
Identity = 200/211 (94.79%), Postives = 206/211 (97.63%), Query Frame = 1 
Query:    1 ILKSNACPQAISKEEAAALKADESLPGGILSVGSLDAIGRSGNHYEVVTRVFSMSFCCQYKVVTMPEQDTVLPTENGGTLELRHNTYSFSSADAALRTEHLGYGDISTDPEICPPIKHLSGQKTKEFTREGVHERLLQCMLRVEMIGCVAHFLHDVVGADDAFCRWKHEGEEERRSLLRATSAEEGEDKRHAGSSPQGKGQSLVVHMRSGD 633
            + +S+ACPQAISKEEAAAL+ADESLPGGILSVGSLDAIGRSGNHYEVVTRVFSMSFCCQYKVV MPEQDTVLPTENG TLELRHNTYSFSSADAALRTEHLGYGDI+TDPEICPPIKHLSGQKTKEFTREGVHERLLQCMLRVEMIGCVAHFLHDVVGADDAFCRWK EG+EERRSLLRATSA EGEDKRHAGSSPQGKGQSLVVHMRSGD
Sbjct:   37 VFQSDACPQAISKEEAAALEADESLPGGILSVGSLDAIGRSGNHYEVVTRVFSMSFCCQYKVVRMPEQDTVLPTENGDTLELRHNTYSFSSADAALRTEHLGYGDIATDPEICPPIKHLSGQKTKEFTREGVHERLLQCMLRVEMIGCVAHFLHDVVGADDAFCRWKDEGKEERRSLLRATSAVEGEDKRHAGSSPQGKGQSLVVHMRSGD 247
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17956.5483.1 vs. uniprot
Match: D8LSV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSV8_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 3.480e-104
Identity = 147/158 (93.04%), Postives = 154/158 (97.47%), Query Frame = 1 
Query:  160 MSFCCQYKVVTMPEQDTVLPTENGGTLELRHNTYSFSSADAALRTEHLGYGDISTDPEICPPIKHLSGQKTKEFTREGVHERLLQCMLRVEMIGCVAHFLHDVVGADDAFCRWKHEGEEERRSLLRATSAEEGEDKRHAGSSPQGKGQSLVVHMRSGD 633
            MSFCCQYKVVTMPEQDTVLPTENG TLELRHNTYSFSSADAALRTEHLGYGDISTDPEICPPIKHLSGQKTKEFTREGVHERLLQCMLRVEMIGCVAHFLHDVVGADDAFC WK EGEEERRSLLRATSAEEG+DKR+AG+SP+GKGQSLVVH++ G+
Sbjct:    1 MSFCCQYKVVTMPEQDTVLPTENGDTLELRHNTYSFSSADAALRTEHLGYGDISTDPEICPPIKHLSGQKTKEFTREGVHERLLQCMLRVEMIGCVAHFLHDVVGADDAFCSWKDEGEEERRSLLRATSAEEGQDKRNAGTSPRGKGQSLVVHIKRGN 158
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17956.5483.1 vs. uniprot
Match: A0A6H5L7B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7B0_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 6.590e-31
Identity = 80/222 (36.04%), Postives = 119/222 (53.60%), Query Frame = 1 
Query:    1 ILKSNACPQAISKEEAAALKADESLPGGILSVGSLDAIGRSGNHYEVVTRVFSMSFCCQYKVVTMPEQDTVLPTENGGTLELRHNTYSFSSADAALRTEHLGYGDISTDPE-------ICPPIKHLSGQKTKEFTREGVHERLLQCMLRVEMIGCVAHFLHDVVGADDAFC----RWKHEGEEERRSLLRATSAEEGEDKRHAGSSPQGKGQSLVVHMRSGD 633
            +++   CPQAIS +EA   ++    PGG+L++ S++ IGRSGNHY  ++ +FSM+FCCQ KV+ +P+ D  LPTE+G   +   N +SFS             G + TD E       +CP  + + G         G+H  L +CM  V+M GC A +L + +G + A C    R   E E+E   L+  T++    ++R AGS        LVVH+RSGD
Sbjct:   42 VVQDRGCPQAISPDEADIRRSTRGWPGGVLTLSSIERIGRSGNHYMAISTLFSMAFCCQVKVLELPDMDWRLPTESGERFKSSTNLFSFSQRHTNRAPPQYINGSLPTDFEGLQGRLDVCPHERLIDGTHANHI--RGLHPHLQKCMRNVKMRGCEAAYLKESLGGEHA-CPSPQRQLAEREDESAQLVAGTTSPL--ERRGAGS--------LVVHVRSGD 250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17956.5483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L0Z0_9PHAE4.540e-13994.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSV8_ECTSI3.480e-10493.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7B0_9PHAE6.590e-3136.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17956contigEcto-sp13_S_contig17956:673..2521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size633
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_001600.1
Cds size633
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462928.6621988-CDS-Ecto-sp13_S_contig17956:672..9141681462928.6621988-CDS-Ecto-sp13_S_contig17956:672..914Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17956 673..914 -
1681462928.6725094-CDS-Ecto-sp13_S_contig17956:1257..14621681462928.6725094-CDS-Ecto-sp13_S_contig17956:1257..1462Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17956 1258..1462 -
1681462928.6863813-CDS-Ecto-sp13_S_contig17956:2002..20731681462928.6863813-CDS-Ecto-sp13_S_contig17956:2002..2073Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17956 2003..2073 -
1681462928.696756-CDS-Ecto-sp13_S_contig17956:2406..25211681462928.696756-CDS-Ecto-sp13_S_contig17956:2406..2521Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17956 2407..2521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17956.5483.1prot_Ecto-sp13_S_contig17956.5483.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17956 673..2521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17956.5483.1

>prot_Ecto-sp13_S_contig17956.5483.1 ID=prot_Ecto-sp13_S_contig17956.5483.1|Name=mRNA_Ecto-sp13_S_contig17956.5483.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=211bp
ILKSNACPQAISKEEAAALKADESLPGGILSVGSLDAIGRSGNHYEVVTR
VFSMSFCCQYKVVTMPEQDTVLPTENGGTLELRHNTYSFSSADAALRTEH
LGYGDISTDPEICPPIKHLSGQKTKEFTREGVHERLLQCMLRVEMIGCVA
HFLHDVVGADDAFCRWKHEGEEERRSLLRATSAEEGEDKRHAGSSPQGKG
QSLVVHMRSGD
back to top

mRNA from alignment at Ecto-sp13_S_contig17956:673..2521-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17956.5483.1 ID=mRNA_Ecto-sp13_S_contig17956.5483.1|Name=mRNA_Ecto-sp13_S_contig17956.5483.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1849bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17956:673..2521- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCTCAAGAGCAATGCCTGTCCTCAAGCGATATCTAAGGAGGAGGCTGC
TGCCTTGAAAGCGGACGAGTCCTTGCCGGGCGGTATTTTGTCCGTAGGCT
CTCTCGACGCAATAGGTGAGCCCGGGACGTTTCCTGCGCTGCCAGTTCCT
ACGAGTTCCCCTGAGACGTCGAGCAGCGGAGCTGTTTCCTACGTCGCCCG
TTGGCATGCTCTCCGGGGTCCACCATGCCGTAAATGCCGACAACGGCTGT
GTGGCAGTCATTGCATACGGCGGTGATGATCGCGGCCTCGTTGGGAGGTT
GATTGAACGTGATGGCGAGGGCGTCGTCACGTGTGCATGCGGTCCGACCT
CGTTGATTGAAGAAGCTCAAGTGTTGAGATATTCAGGGCAACTGTCGCGG
TCGTAATGGTTCTCCACTGTTGTTACTCGCACTCGTCCGTCTTACCAGGA
CGCAGCGGAAACCATTATGAGGTGGTAACAAGGGTCTTTTCGATGTCGTT
CTGCTGCCAGTACAAAGTGGTGAGTGGTCGAACCTCGGGCACATGTGCAG
CATACGAGAGTGAGTGTGGGGAAGAGAATCTCTCTTGCTTGAAGATGTAG
TCGACCGTCACTGCTTCGCTCCGATGTTGAACTTTTGAATGTGCATCCAG
AAGCGTTCTTGAGTACCACGTTGTCGAGATACCTTGACCGGATTGTTCTT
CTGTCGTGTTTTGTTTGCTATATACAGAAGTACACGCTTTTGACAGGTGG
TCGCGCTTTGCTAGCTGCCCCACCGGATGCGAGTATCACCTTGGCGTACC
AGCACTGAATCGACAGAATGCTGATCCGTACTTTCTGGACAAGAGCTGAT
TTTGTATCAAGCGTGGGTTTTCAAAGGTTAATCGCCGCACACTCTCCCAT
TTTTGTATTGATCTTCTCGCTGGGAACTTTCCCAGATGTATCTATCGTGG
CAAAAGCACGCTCCATTGAGCACCGATAGTTTTCAACGATGCCCTCCCCT
CCCCTTGAGCATCTTGAGTGCGTGATGATATGTTCCCCTCCCGCCATTTG
CAAACCCAGGTGACGATGCCCGAACAGGATACCGTCCTCCCCACGGAGAA
CGGAGGTACGTTGGAGCTGAGGCACAACACGTATAGCTTTTCTTCCGCCG
ATGCTGCTCTCCGCACAGAGCACCTAGGATACGGAGATATCTCAACGGAC
CCCGAGATATGCCCGCCGATCAAGCATCTTTCTGGACAAAAGACAAAGGA
GTTTACCCGCGAAGGTGAGGAATGTTTACGGTACACCGGTCAGCCTTGGC
TGAAGCTGTCACGAACCAGCATGGAGAGAAAGATGAGAAGTAGGTTCGTC
AAGGCTCTACTAACTTGGAACACAGTTCGGCGCAGGCCCTAGGGTTGCTA
CTGCTTCCCCTTTTCAAGGAAAAAAATGAATGTAAAGGCTGGCTGTTTGA
TGTCTGTACCATGTCTTACTACCCAGCGTGTGTCTACGAAACCTGCTTGT
ACCAAGACCCAACCCGAGTTGTTCCGTGTTGCCGATTAGTTTCGTATCCT
CTCGGCGTTCTCATCCGGAATTTTGGCTCGATGTTCGGCCTTGCTTGCCG
GTTGCAGGTGTTCATGAGAGGCTCCTTCAGTGCATGCTGCGTGTGGAGAT
GATCGGGTGCGTAGCGCATTTCCTTCACGACGTCGTGGGCGCCGACGACG
CCTTCTGCCGCTGGAAACATGAGGGCGAGGAGGAACGCCGGTCACTGTTG
CGAGCCACGTCGGCCGAGGAGGGCGAGGATAAGCGCCACGCCGGGAGTTC
CCCCCAGGGTAAAGGCCAGTCTCTGGTCGTCCACATGCGCTCCGGGGAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17956:673..2521-

>mRNA_Ecto-sp13_S_contig17956.5483.1 ID=mRNA_Ecto-sp13_S_contig17956.5483.1|Name=mRNA_Ecto-sp13_S_contig17956.5483.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17956:673..2521- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCTCAAGAGCAATGCCTGTCCTCAAGCGATATCTAAGGAGGAGGCTGC
TGCCTTGAAAGCGGACGAGTCCTTGCCGGGCGGTATTTTGTCCGTAGGCT
CTCTCGACGCAATAGGACGCAGCGGAAACCATTATGAGGTGGTAACAAGG
GTCTTTTCGATGTCGTTCTGCTGCCAGTACAAAGTGGTGACGATGCCCGA
ACAGGATACCGTCCTCCCCACGGAGAACGGAGGTACGTTGGAGCTGAGGC
ACAACACGTATAGCTTTTCTTCCGCCGATGCTGCTCTCCGCACAGAGCAC
CTAGGATACGGAGATATCTCAACGGACCCCGAGATATGCCCGCCGATCAA
GCATCTTTCTGGACAAAAGACAAAGGAGTTTACCCGCGAAGGTGTTCATG
AGAGGCTCCTTCAGTGCATGCTGCGTGTGGAGATGATCGGGTGCGTAGCG
CATTTCCTTCACGACGTCGTGGGCGCCGACGACGCCTTCTGCCGCTGGAA
ACATGAGGGCGAGGAGGAACGCCGGTCACTGTTGCGAGCCACGTCGGCCG
AGGAGGGCGAGGATAAGCGCCACGCCGGGAGTTCCCCCCAGGGTAAAGGC
CAGTCTCTGGTCGTCCACATGCGCTCCGGGGAC
back to top