mRNA_Ecto-sp13_S_contig1795.5478.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1795.5478.1
Unique NamemRNA_Ecto-sp13_S_contig1795.5478.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1795.5478.1 vs. uniprot
Match: D7FWA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWA9_ECTSI)

HSP 1 Score: 1154 bits (2984), Expect = 0.000e+0
Identity = 878/998 (87.98%), Postives = 904/998 (90.58%), Query Frame = 1
Query:    1 FFFRGCVCSSSACSVGYRSEIASQHTAGDVGSPLEWLAEEVKDVEMGDASSEEAANTGALSSLSANATSRHENGSRLFGRTLNRTLTSSPPSTERGLTATSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPWAPWRRQPSEPSIAPVSSSPAETAGMVNMEEGNAGAVAGAVATAGIRGGGPCIAARAIPSLSSLESLVMLMPPSPATPPEEDCDSGPWPHGKQNPSAAAGGLEAGGAGARVGDGTTXXXXXXXXXXKEGDLADGKSGVETCAQFAAKSGFIPFRGYQPNDAWLAVAMQKEEKQKRQEAERARLAGHPPVGRAAPLKEMMQEEESVASRTERTTAKIT-ARHHTLVQQSSDAGSPGERKVPGGGDTSPRSPSATSASPQQPPGPGLLPGRAFRREREVSPPPSRPXXXXXXXXXXXXRSFMPPASPANSTCLGGAECSLSHSPAAPSQRSSLKGCTSPTASQLSASXXXXXXXXVAESQLSTYSEEXXXXXXXXXXXXXARACEE-GPAPFSGSPSPEKELLGCSITSAEEQVATXXXXXXXXXXXXXXXXXXXXXXXXXPSPQPVVAQRRCVAEVGSEPPGAVAGWVATGTGTGNRADSGSRDQAAEEKRGPPVSPAEKPLPPSPXXXXPGRSPTPSLLPDGDSTHAVDETPGRLQSPVRTPPTAERPERARKAPRIVARKTGQTKRPRPSRMAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTSSLRTSPVPRPPLLPPAVVLSGRDLPPSDPAAASLLAWSLSDSTLSGCSRPGTGGXXXGTSSIPVSVCSEAASPLVGMRFVAKDGGXXXXXXXXX-----RSRPKSWSNHGGGVPLIGVRGSPPLGHPPSVPVALCGVGRPAASVEEEEGAXXXXGRVASAVAGGGTAGVVDESSCEGGVGGRRGKRPRRYFFP 2973
            +FFRGC CSSSACS+GYRSEIASQHTAGD+GSPLEWLAEEVKDVEMGDASSEEAANTGALSSLSANATSRH+NGSRLFGRTLNRTLTSSPPS               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TPWAPWRRQPSEPSIAPVSSSPAETA MVNMEEGNAGAVAGAVATAGIRGGGPCIAARAIPSL+SLESLVMLMPPSPATPPEEDCD+GP P GKQNP AAAGGL+AGGAGAR+GDGTT   XXXXXX KEG+L DGK GVETCAQFA KSGF+PFRGYQP+DAWLAVAMQKEEKQK +EAE+ARLAGHP +GRA PLKE++ EE+SVASRTERTTAK   AR+HTLVQQSS+AG  GERKVPG GDTSPRSPS TSASPQQPPGPGLLP  AFRREREVSPPPSRPXXXXXXXXXXXXRSFMPPASPANST L GAEC  S SPAAPSQRSSLKGCTSPTASQLSAS XXXXXXXVAESQLSTYSEEXXXXXXXXXX   ARACEE G APFSGSPSPEKELLGCS T+AEEQ+A XXXXXXXXXXXXXXXXXXXXXXXXXPSPQPVVAQRRCVAEVGSEPPGAVAG              GSRDQAAEEKRGPPVSPAE PLPP  XXXX GRSPT   LPDGDSTHAVDETP RL+SPV TPP AERPERARKAPRIVARKTGQTKRPR SRMAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTSS RTSPVPRPPLLPPAVVLSGRDLPPSDPAAA+LLAWSLSDSTLSGCSRPGTGGXXX TSSIPVSVCSEAASPLVGMRFV KDGGXXXXXXXXX     RSRP SWS+HGGGVPLIGVRGSPPLGHPPS+PVALCGVGRPAAS EEEEGA X  G VA+AVAG GTAGVVDESSCEGGVGGRRGKRPRRYFFP
Sbjct:   23 WFFRGCGCSSSACSLGYRSEIASQHTAGDIGSPLEWLAEEVKDVEMGDASSEEAANTGALSSLSANATSRHDNGSRLFGRTLNRTLTSSPPSXXXXX----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTPWAPWRRQPSEPSIAPVSSSPAETAEMVNMEEGNAGAVAGAVATAGIRGGGPCIAARAIPSLNSLESLVMLMPPSPATPPEEDCDAGPGPFGKQNPLAAAGGLQAGGAGARMGDGTTVDEXXXXXX-KEGELGDGKPGVETCAQFAEKSGFVPFRGYQPSDAWLAVAMQKEEKQKGEEAEKARLAGHPALGRAVPLKEIIHEEKSVASRTERTTAKARFARNHTLVQQSSEAGPLGERKVPGDGDTSPRSPSVTSASPQQPPGPGLLPDGAFRREREVSPPPSRPXXXXXXXXXXXXRSFMPPASPANSTSLAGAECCSSQSPAAPSQRSSLKGCTSPTASQLSASPXXXXXXXVAESQLSTYSEEXXXXXXXXXXI--ARACEEEGLAPFSGSPSPEKELLGCSNTAAEEQIAXXXXXXXXXXXXXXXXXXXXXXXXXXPSPQPVVAQRRCVAEVGSEPPGAVAGGXXXXXXXXXXXXXGSRDQAAEEKRGPPVSPAEIPLPPXXXXXXXGRSPTRPPLPDGDSTHAVDETPERLRSPVTTPPPAERPERARKAPRIVARKTGQTKRPRLSRMAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTSSFRTSPVPRPPLLPPAVVLSGRDLPPSDPAAAALLAWSLSDSTLSGCSRPGTGGXXXXTSSIPVSVCSEAASPLVGMRFVVKDGGXXXXXXXXXXSCSSRSRPNSWSDHGGGVPLIGVRGSPPLGHPPSLPVALCGVGRPAASAEEEEGAAXGAGHVAAAVAGAGTAGVVDESSCEGGVGGRRGKRPRRYFFP 1007          
BLAST of mRNA_Ecto-sp13_S_contig1795.5478.1 vs. uniprot
Match: A0A6H5JM28_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM28_9PHAE)

HSP 1 Score: 984 bits (2543), Expect = 0.000e+0
Identity = 704/982 (71.69%), Postives = 734/982 (74.75%), Query Frame = 1
Query:   40 SVGYRSEIASQHTAGDVGSPLEWLAEEVKDVEMGDASSEEAANTGALSSLSANATSRHENGSRLFGRTLNRTLTSSPPSTERGLTATSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPWAPWRRQPSEPSIAPVSSSPAETAGMVNMEEGNAGAVAGAVATAGIRGGGPCIAARAIPSLSSLESLVMLMPPSPATPPEEDCDSGPWPHGKQNPSAAAGGLEAGGAGARVGDGTTXXXXXXXXXX--------------------------------KEGDLADGKSGVETCAQFAAKSGFIPFRGYQPNDAWLAVAMQKEEKQKRQEAERARLAGHPPVGRAAPLKEMMQEEESVASRTERTTAKITARHHTLVQQSSDAGSPGERKVPGGGDTSPRSPSATSASPQQPPGPGLLPGRAFRREREVSPPPSRPXXXXXXXXXXXXRSFMPPASPANSTCLGGAECSLSHSPAAPSQRSSLKGCTSPTASQLSASXXXXXXXXVAESQLSTYSEEXXXXXXXXXXXXXARACEEGPAPFSGSPSPEKELLGCSITSAEEQVATXXXXXXXXXXXXXXXXXXXXXXXXXPSPQPVVAQRRCVAEVGSEPPGAVAGWVATGTGTGNRADSGSRDQAAEEKRGPPVSPAEKPLPPSPXXXXPGRSPTPSLLPDGDSTHAVDETPGRLQSPVRTPPTAERPERARKAPRIVARKTGQTKRPRPSRMAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPT---------------------------------------------SSLRTSPVPRPPLLPPAVVLSGRDLPPSDPAAASLLAWSLSDSTLSGCSRPGTGGXXXGTSSIPVSVCSEAASPLVGMRFVAKDGGXXXXXXXXXRSRPKSWSNHGGGVPLIGVRG 2754
            S+GYRSEIASQHTAGD+GSPLEWLAEEVKD+EMGDASSE+AANTGALSSLSANATSRHENGS+L GRTLN TL+SSP STERGLTATSPP  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            TPWAPWRRQPSEPSIAPVSSSPAETA M+NMEEGNAGA AG  ATA IRGGGPCIAARAIPSL+SLESLVMLMPPSPATPP+EDCDSGP P GKQN SAAAGGLEAGGAGARVGDG T                                          KEG+L DGK GV TCAQFAAKSGF+PFRGYQP++AWLAVAMQKEEKQKR+EAERARLAGHP +GRA PLKEM+QEEESVAS+TERTTAK  AR+HTL +QSSDAG  GE KV   GDTSPRSPS   ASPQQPPGPGL PGRAFRREREVSPPPSRPXXXXXXXXXXXXRSFMPPASPANSTCLGGAE SLSHSPAAPSQRSSLKGCTSP+ASQLSAS XXXXXXXVAESQLSTYSEEXXXXXXXXXXX  ARACEEGPA FSGSPS EKELLG SIT+AEEQ+AT                         PSPQ VVAQRRCVAEVGSE PGA+AG V+TG       DSGS D AAEEKRGPPVSPAE PLPPSP    PGRSPTP  LP+GDSTHAVDETP RL+S V TPP AERPER RKAPRIVARKTGQTKRPRPSR+A+A                                                 PT                                             SS RTSPVPRPPLLPPAVVLSGRDLPPSDPAAA+LLAWSLSDSTLSGCSRPGTG    GTSSIPVSV SEAASPLVGMRFV KDGGXXXXXXXX RSRP SW +HGGG PLIG RG
Sbjct:   18 SLGYRSEIASQHTAGDIGSPLEWLAEEVKDIEMGDASSEKAANTGALSSLSANATSRHENGSQLLGRTLNHTLSSSPQSTERGLTATSPPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP-----------TPWAPWRRQPSEPSIAPVSSSPAETAEMINMEEGNAGAAAGEGATAEIRGGGPCIAARAIPSLNSLESLVMLMPPSPATPPKEDCDSGPGPFGKQNTSAAAGGLEAGGAGARVGDGNTVVVAGGGSVPGQQSRGGFVPVAPWRNWVNATFVLEDEEEEEKKEGELGDGKPGVRTCAQFAAKSGFVPFRGYQPSNAWLAVAMQKEEKQKREEAERARLAGHPSLGRAVPLKEMVQEEESVASQTERTTAKTIARNHTLARQSSDAGPHGEHKVTVDGDTSPRSPSGPLASPQQPPGPGLRPGRAFRREREVSPPPSRPXXXXXXXXXXXXRSFMPPASPANSTCLGGAEYSLSHSPAAPSQRSSLKGCTSPSASQLSASPXXXXXXXVAESQLSTYSEEXXXXXXXXXXXI-ARACEEGPAAFSGSPSLEKELLGRSITAAEEQIATEELIAAGGKSGAEEGSTWPSTSASPPSPQTVVAQRRCVAEVGSEAPGALAGGVSTGXXXXXSTDSGSPDHAAEEKRGPPVSPAEIPLPPSPPHPPPGRSPTPPRLPNGDSTHAVDETPERLRSLVTTPPPAERPERVRKAPRIVARKTGQTKRPRPSRIASAGAAPPSSAASSSVEMKARAVIPSAPPSAAAPWPSSLGTLSQFAAGARISPTPSAMLLSPSPKTPPPLSLTTVGAPPCHLLLTPXXXXXXXXXASPTSSFRTSPVPRPPLLPPAVVLSGRDLPPSDPAAAALLAWSLSDSTLSGCSRPGTGSGGGGTSSIPVSVSSEAASPLVGMRFVGKDGGXXXXXXXX-RSRPNSWPDHGGGGPLIGGRG 986          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1795.5478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWA9_ECTSI0.000e+087.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JM28_9PHAE0.000e+071.69Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1795contigEcto-sp13_S_contig1795:7835..12031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size2976
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_003670.1
Cds size2976
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462928.4940317-CDS-Ecto-sp13_S_contig1795:7834..85091681462928.4940317-CDS-Ecto-sp13_S_contig1795:7834..8509Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1795 7835..8509 -
1681462928.5048697-CDS-Ecto-sp13_S_contig1795:9067..104891681462928.5048697-CDS-Ecto-sp13_S_contig1795:9067..10489Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1795 9068..10489 -
1681462928.5131948-CDS-Ecto-sp13_S_contig1795:10594..113471681462928.5131948-CDS-Ecto-sp13_S_contig1795:10594..11347Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1795 10595..11347 -
1681462928.5216377-CDS-Ecto-sp13_S_contig1795:11905..120311681462928.5216377-CDS-Ecto-sp13_S_contig1795:11905..12031Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1795 11906..12031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1795.5478.1prot_Ecto-sp13_S_contig1795.5478.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1795 7835..12031 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1795.5478.1

>prot_Ecto-sp13_S_contig1795.5478.1 ID=prot_Ecto-sp13_S_contig1795.5478.1|Name=mRNA_Ecto-sp13_S_contig1795.5478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=992bp
FFFRGCVCSSSACSVGYRSEIASQHTAGDVGSPLEWLAEEVKDVEMGDAS
SEEAANTGALSSLSANATSRHENGSRLFGRTLNRTLTSSPPSTERGLTAT
SPPVPPPVPAASSSGLNSPTTSLSPAEAGGAAAAAAGGAAAAAAAVVGQL
PPKAPTATTSARPPRAQQKQRRPPPTPWAPWRRQPSEPSIAPVSSSPAET
AGMVNMEEGNAGAVAGAVATAGIRGGGPCIAARAIPSLSSLESLVMLMPP
SPATPPEEDCDSGPWPHGKQNPSAAAGGLEAGGAGARVGDGTTDEEEEEE
EEKKEGDLADGKSGVETCAQFAAKSGFIPFRGYQPNDAWLAVAMQKEEKQ
KRQEAERARLAGHPPVGRAAPLKEMMQEEESVASRTERTTAKITARHHTL
VQQSSDAGSPGERKVPGGGDTSPRSPSATSASPQQPPGPGLLPGRAFRRE
REVSPPPSRPSPLPLSMSSSSSRSFMPPASPANSTCLGGAECSLSHSPAA
PSQRSSLKGCTSPTASQLSASPLKGCFSPVAESQLSTYSEEEEEEEDLDV
DVEIARACEEGPAPFSGSPSPEKELLGCSITSAEEQVATEEQIAAEERSG
AEEGSPSPSTSASPPSPQPVVAQRRCVAEVGSEPPGAVAGWVATGTGTGN
RADSGSRDQAAEEKRGPPVSPAEKPLPPSPPHPPPGRSPTPSLLPDGDST
HAVDETPGRLQSPVRTPPTAERPERARKAPRIVARKTGQTKRPRPSRMAA
AGAAPPSAAVSSSLEMKAPPPPLSLVTVGAPPCHLLFTPPSPAGGSSSAS
PTSSLRTSPVPRPPLLPPAVVLSGRDLPPSDPAAASLLAWSLSDSTLSGC
SRPGTGGGGGGTSSIPVSVCSEAASPLVGMRFVAKDGGGGGGGSSSSRSR
PKSWSNHGGGVPLIGVRGSPPLGHPPSVPVALCGVGRPAASVEEEEGAAA
GAGRVASAVAGGGTAGVVDESSCEGGVGGRRGKRPRRYFFP*
back to top

mRNA from alignment at Ecto-sp13_S_contig1795:7835..12031-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1795.5478.1 ID=mRNA_Ecto-sp13_S_contig1795.5478.1|Name=mRNA_Ecto-sp13_S_contig1795.5478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4197bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1795:7835..12031- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTTTTTTCGTGGTTGTGTGTGCTCGTCGTCGGCCTGCAGCGTGGGCTA CAGGAGTGAGATCGCGAGTCAGCACACAGCCGGTGACGTCGGATCGCCGT TAGAATGGCTCGCAGAAGAGGTGAAGGTGATGCCGTGCTGCCTTGCTTGT GTATCGCCTGTCGTAGCCCTATCCCCACAAACACACCTATACTCTGTTGC CGGTGATGGTTTGCATATATTGCTGGTCTATGCGGTGGGATACAAACCGC GCGAAATAGTGCGGGACGGGGTCAAAGAATGAGAAATAGCCGTCGCCGCG ACACGTTGGTCGACCGTACCCACGTGTTTTGTGAGAGTGCAGCTGAGGTG CCTCAATGTGTGGTTTTGGGCGGGGTATGTATCAGGCCAGTCCATTCGCC CTGCTGCAACGAGCACCCGCCCTATCCAGCGCCCTTCTAAACGTTTACAT GAACTTGATCGTTCTGGGCAGAAAAATTTAATGCGCCTTTTGTATAGGGC CCAAGCGTCTTTTGAATAGAGGGACCACGAGTGACTGCGGTGTCCTGGCT CACTGCTAGACAGATGAACCATGATGGTGTGGAGACACAAAAGACTTCTG CTTGTCTCCTGCAATCACATCGACTCCTGCATGACAACGAGTCTCAGCTC CTGCATCGCTGCACGCACGCTCACCCCAAAACAGGACGTTGAGATGGGAG ACGCCTCTTCCGAAGAGGCCGCGAACACGGGGGCGCTATCCTCCCTATCG GCCAACGCTACCAGCAGGCACGAGAACGGCAGTCGGCTCTTCGGCCGGAC CCTTAACCGCACGCTAACTTCCTCGCCGCCGTCGACGGAGCGGGGGCTAA CGGCGACATCGCCGCCGGTGCCGCCGCCGGTGCCGGCAGCCTCGTCGTCG GGGCTGAACTCGCCGACCACCTCCCTGTCCCCGGCGGAGGCCGGGGGGGC GGCGGCGGCGGCGGCCGGGGGGGCGGCGGCGGCGGCGGCGGCAGTCGTGG GGCAGCTGCCGCCGAAGGCGCCAACGGCAACAACATCGGCGAGACCGCCG CGTGCCCAGCAGAAGCAGCGCAGGCCGCCGCCGACGCCTTGGGCCCCCTG GAGGAGGCAACCGTCGGAGCCGTCGATCGCGCCGGTTTCTTCATCGCCTG CGGAGACGGCGGGGATGGTGAACATGGAAGAAGGGAATGCCGGTGCCGTG GCAGGGGCAGTGGCTACCGCGGGGATACGGGGGGGTGGTCCCTGCATCGC GGCCCGGGCGATCCCGTCCCTGAGCTCGCTCGAGTCGCTGGTGATGCTCA TGCCGCCGTCGCCTGCGACGCCTCCTGAGGAGGACTGCGATTCTGGGCCG TGGCCGCACGGCAAGCAGAATCCTTCGGCCGCAGCGGGGGGTTTAGAAGC CGGAGGAGCAGGTGCCCGTGTGGGAGATGGAACCACCGTGGGGGGTCCCG GTGGTGGTTCGATCCCAGGACAGCAGTCGCGGGGTGGGTTCGTTCCCGTA GCACCTTGGCGGAACTGGGTGAATGGGACGTTTGTTCTGGAGGACGAGGA GGAGGAGGAGGAGGAGGAGAAGAAGGAGGGGGACTTGGCAGACGGGAAGT CCGGTGTCGAAACGTGCGCGCAGTTCGCCGCGAAGAGCGGCTTCATCCCC TTCCGCGGGTACCAGCCGAACGACGCGTGGCTAGCCGTCGCGATGCAGAA GGAGGAGAAGCAGAAGCGGCAGGAGGCGGAGAGGGCTCGCCTGGCAGGGC ATCCCCCGGTGGGCAGAGCGGCGCCGTTGAAGGAAATGATGCAGGAGGAG GAAAGTGTCGCTAGTCGAACAGAACGCACGACGGCGAAAATTACTGCGAG ACACCACACCCTGGTGCAGCAGTCTTCGGACGCGGGGTCCCCCGGCGAGC GCAAGGTTCCCGGGGGTGGGGACACTTCGCCCCGATCCCCGTCCGCAACG TCGGCGTCTCCGCAGCAGCCTCCTGGTCCTGGGCTGCTGCCAGGTCGAGC GTTTCGCCGTGAGCGGGAGGTCTCGCCGCCACCGTCGCGGCCGTCGCCGC TGCCCCTGTCCATGTCTTCGAGCTCGTCTAGGTCGTTCATGCCGCCGGCG TCGCCCGCGAACTCGACTTGCCTGGGCGGGGCGGAGTGTTCTTTGTCGCA CTCCCCGGCGGCGCCGTCGCAGAGATCGTCGTTGAAGGGTTGCACGTCGC CAACAGCGTCTCAGCTCTCGGCGTCTCCCTTGAAAGGCTGTTTCTCTCCG GTAGCGGAGTCTCAGCTCTCCACCTACTCTGAGGAGGAGGAAGAGGAGGA GGACTTGGACGTGGACGTGGAGATTGCGCGAGCATGTGAAGAAGGGCCGG CGCCTTTCTCGGGATCCCCTTCTCCCGAGAAGGAATTGTTGGGCTGTTCG ATTACATCGGCGGAGGAACAGGTCGCGACGGAAGAACAGATTGCGGCGGA AGAAAGAAGTGGAGCGGAAGAAGGTTCGCCTTCGCCTTCCACCTCGGCAT CACCACCATCACCCCAACCGGTGGTGGCCCAGCGCCGCTGCGTTGCGGAG GTCGGCAGCGAGCCGCCCGGCGCAGTGGCCGGCTGGGTCGCCACCGGCAC CGGTACGGGCAACAGGGCCGACAGCGGTAGCCGTGACCAAGCCGCGGAGG AGAAGAGAGGTCCGCCGGTGTCCCCGGCGGAGAAACCGTTACCCCCTTCA CCGCCTCACCCGCCCCCTGGCCGATCTCCGACACCATCACTGCTGCCAGA CGGTGACTCGACCCATGCCGTTGATGAGACTCCCGGACGCCTCCAATCAC CGGTGAGGACGCCTCCGACTGCGGAACGCCCGGAAAGAGCGCGGAAGGCG CCTCGGATCGTTGCGAGAAAGACCGGGCAGACGAAACGGCCAAGACCGAG TCGGATGGCTGCCGCAGGTGCGGCTCCGCCATCTGCAGCTGTGTCGTCGT CACTGGAGATGAAGGTGAGGCTGAGAAGCCAAGGCGTTCGTTCATTCCCT AGAGCCGTGCAGATTGATTGAACATAGCGTGTCGCTCCAAACTGCCTTCC CCATTGACTATCCACCAATCGTGCAAATGTTATCGATTTGAGTGGAAAAA CCTCCACCCATCCCCTTGGGCTTGTGGTTACACTTCGCACGAGTTGTAGG CCCTCTCTGAGTTCATACAGGTATATATTTCCTCAGAAGTTACGCGTCCA CCCTGATGTGTTCGTTGCCTCTTACGCTCTCCCTACCTCCCCCGTCACGT TCTCCCGCGTCCAGCGGCCAGCGCGAGCGCAACCGGCGCGTGCCCGTGCA TGGTGTGAGCCCTCGCATGCCCCAGCGGCAGCGGCAGCGGCAGCAGCGGC TCCGCAGCATCAGCAGCAGCCACGCGCGGTCATACCGTTGGCGCCGCCTT TCGCGGCGGCACCGTGGCCATCCGCCCTCGGGACGCTGTCGCAATTCGCG GCCGGCACCAGAATCTCGCCAACGCCTTCGGCAATGCTGCTTTCGCCTTC CCCGAAGACGCCGCCGCCGCAGGCGCCGCCGCCGCCGCTCTCCCTCGTCA CGGTCGGGGCGCCGCCGTGCCATCTCCTGTTCACGCCGCCGTCGCCAGCC GGGGGGTCTAGCTCGGCGTCGCCGACTTCCTCACTCCGGACTTCGCCGGT GCCGCGGCCGCCGCTGCTGCCGCCGGCCGTGGTTCTCTCGGGGAGAGACT TGCCCCCGTCCGACCCTGCCGCCGCCTCTCTGCTGGCGTGGTCGCTGTCT GACTCGACTCTTTCTGGCTGCTCTAGGCCCGGCACCGGAGGTGGCGGGGG GGGAACGAGCTCGATCCCGGTGTCCGTTTGCTCGGAGGCCGCCTCGCCAT TGGTCGGGATGCGGTTCGTTGCGAAGGACGGTGGCGGCGGCGGCGGGGGT AGTTCTAGCTCGAGGTCAAGGCCGAAGTCGTGGTCGAACCACGGGGGAGG GGTCCCGCTGATTGGAGTGAGGGGGTCCCCCCCGCTTGGCCACCCGCCGA GCGTCCCGGTGGCGCTGTGCGGGGTGGGGCGGCCGGCGGCTTCGGTGGAA GAGGAGGAGGGTGCCGCTGCCGGTGCAGGCCGTGTTGCGTCGGCGGTTGC CGGGGGGGGGACTGCCGGTGTTGTCGACGAGTCGAGCTGCGAAGGCGGAG TTGGGGGCCGTAGAGGAAAGAGACCAAGACGCTATTTTTTCCCGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1795:7835..12031-

>mRNA_Ecto-sp13_S_contig1795.5478.1 ID=mRNA_Ecto-sp13_S_contig1795.5478.1|Name=mRNA_Ecto-sp13_S_contig1795.5478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2976bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1795:7835..12031- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTTTTTTCGTGGTTGTGTGTGCTCGTCGTCGGCCTGCAGCGTGGGCTA
CAGGAGTGAGATCGCGAGTCAGCACACAGCCGGTGACGTCGGATCGCCGT
TAGAATGGCTCGCAGAAGAGGTGAAGGACGTTGAGATGGGAGACGCCTCT
TCCGAAGAGGCCGCGAACACGGGGGCGCTATCCTCCCTATCGGCCAACGC
TACCAGCAGGCACGAGAACGGCAGTCGGCTCTTCGGCCGGACCCTTAACC
GCACGCTAACTTCCTCGCCGCCGTCGACGGAGCGGGGGCTAACGGCGACA
TCGCCGCCGGTGCCGCCGCCGGTGCCGGCAGCCTCGTCGTCGGGGCTGAA
CTCGCCGACCACCTCCCTGTCCCCGGCGGAGGCCGGGGGGGCGGCGGCGG
CGGCGGCCGGGGGGGCGGCGGCGGCGGCGGCGGCAGTCGTGGGGCAGCTG
CCGCCGAAGGCGCCAACGGCAACAACATCGGCGAGACCGCCGCGTGCCCA
GCAGAAGCAGCGCAGGCCGCCGCCGACGCCTTGGGCCCCCTGGAGGAGGC
AACCGTCGGAGCCGTCGATCGCGCCGGTTTCTTCATCGCCTGCGGAGACG
GCGGGGATGGTGAACATGGAAGAAGGGAATGCCGGTGCCGTGGCAGGGGC
AGTGGCTACCGCGGGGATACGGGGGGGTGGTCCCTGCATCGCGGCCCGGG
CGATCCCGTCCCTGAGCTCGCTCGAGTCGCTGGTGATGCTCATGCCGCCG
TCGCCTGCGACGCCTCCTGAGGAGGACTGCGATTCTGGGCCGTGGCCGCA
CGGCAAGCAGAATCCTTCGGCCGCAGCGGGGGGTTTAGAAGCCGGAGGAG
CAGGTGCCCGTGTGGGAGATGGAACCACCGACGAGGAGGAGGAGGAGGAG
GAGGAGAAGAAGGAGGGGGACTTGGCAGACGGGAAGTCCGGTGTCGAAAC
GTGCGCGCAGTTCGCCGCGAAGAGCGGCTTCATCCCCTTCCGCGGGTACC
AGCCGAACGACGCGTGGCTAGCCGTCGCGATGCAGAAGGAGGAGAAGCAG
AAGCGGCAGGAGGCGGAGAGGGCTCGCCTGGCAGGGCATCCCCCGGTGGG
CAGAGCGGCGCCGTTGAAGGAAATGATGCAGGAGGAGGAAAGTGTCGCTA
GTCGAACAGAACGCACGACGGCGAAAATTACTGCGAGACACCACACCCTG
GTGCAGCAGTCTTCGGACGCGGGGTCCCCCGGCGAGCGCAAGGTTCCCGG
GGGTGGGGACACTTCGCCCCGATCCCCGTCCGCAACGTCGGCGTCTCCGC
AGCAGCCTCCTGGTCCTGGGCTGCTGCCAGGTCGAGCGTTTCGCCGTGAG
CGGGAGGTCTCGCCGCCACCGTCGCGGCCGTCGCCGCTGCCCCTGTCCAT
GTCTTCGAGCTCGTCTAGGTCGTTCATGCCGCCGGCGTCGCCCGCGAACT
CGACTTGCCTGGGCGGGGCGGAGTGTTCTTTGTCGCACTCCCCGGCGGCG
CCGTCGCAGAGATCGTCGTTGAAGGGTTGCACGTCGCCAACAGCGTCTCA
GCTCTCGGCGTCTCCCTTGAAAGGCTGTTTCTCTCCGGTAGCGGAGTCTC
AGCTCTCCACCTACTCTGAGGAGGAGGAAGAGGAGGAGGACTTGGACGTG
GACGTGGAGATTGCGCGAGCATGTGAAGAAGGGCCGGCGCCTTTCTCGGG
ATCCCCTTCTCCCGAGAAGGAATTGTTGGGCTGTTCGATTACATCGGCGG
AGGAACAGGTCGCGACGGAAGAACAGATTGCGGCGGAAGAAAGAAGTGGA
GCGGAAGAAGGTTCGCCTTCGCCTTCCACCTCGGCATCACCACCATCACC
CCAACCGGTGGTGGCCCAGCGCCGCTGCGTTGCGGAGGTCGGCAGCGAGC
CGCCCGGCGCAGTGGCCGGCTGGGTCGCCACCGGCACCGGTACGGGCAAC
AGGGCCGACAGCGGTAGCCGTGACCAAGCCGCGGAGGAGAAGAGAGGTCC
GCCGGTGTCCCCGGCGGAGAAACCGTTACCCCCTTCACCGCCTCACCCGC
CCCCTGGCCGATCTCCGACACCATCACTGCTGCCAGACGGTGACTCGACC
CATGCCGTTGATGAGACTCCCGGACGCCTCCAATCACCGGTGAGGACGCC
TCCGACTGCGGAACGCCCGGAAAGAGCGCGGAAGGCGCCTCGGATCGTTG
CGAGAAAGACCGGGCAGACGAAACGGCCAAGACCGAGTCGGATGGCTGCC
GCAGGTGCGGCTCCGCCATCTGCAGCTGTGTCGTCGTCACTGGAGATGAA
GGCGCCGCCGCCGCCGCTCTCCCTCGTCACGGTCGGGGCGCCGCCGTGCC
ATCTCCTGTTCACGCCGCCGTCGCCAGCCGGGGGGTCTAGCTCGGCGTCG
CCGACTTCCTCACTCCGGACTTCGCCGGTGCCGCGGCCGCCGCTGCTGCC
GCCGGCCGTGGTTCTCTCGGGGAGAGACTTGCCCCCGTCCGACCCTGCCG
CCGCCTCTCTGCTGGCGTGGTCGCTGTCTGACTCGACTCTTTCTGGCTGC
TCTAGGCCCGGCACCGGAGGTGGCGGGGGGGGAACGAGCTCGATCCCGGT
GTCCGTTTGCTCGGAGGCCGCCTCGCCATTGGTCGGGATGCGGTTCGTTG
CGAAGGACGGTGGCGGCGGCGGCGGGGGTAGTTCTAGCTCGAGGTCAAGG
CCGAAGTCGTGGTCGAACCACGGGGGAGGGGTCCCGCTGATTGGAGTGAG
GGGGTCCCCCCCGCTTGGCCACCCGCCGAGCGTCCCGGTGGCGCTGTGCG
GGGTGGGGCGGCCGGCGGCTTCGGTGGAAGAGGAGGAGGGTGCCGCTGCC
GGTGCAGGCCGTGTTGCGTCGGCGGTTGCCGGGGGGGGGACTGCCGGTGT
TGTCGACGAGTCGAGCTGCGAAGGCGGAGTTGGGGGCCGTAGAGGAAAGA
GACCAAGACGCTATTTTTTCCCGTAG
back to top