mRNA_Ecto-sp13_S_contig17932.5471.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17932.5471.1 vs. uniprot
Match: A0A6H5KY11_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KY11_9PHAE) HSP 1 Score: 269 bits (687), Expect = 1.420e-85 Identity = 132/139 (94.96%), Postives = 133/139 (95.68%), Query Frame = 1
Query: 10 EKPPVRKTSDFRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKAKVQRKQAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKV 426
EKPPVRKTSD RDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKA R AARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSK+
Sbjct: 283 EKPPVRKTSDSRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKA---RGGAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKL 418
BLAST of mRNA_Ecto-sp13_S_contig17932.5471.1 vs. uniprot
Match: UPI0019C7457C (Acyl-CoA carboxylase subunit beta n=1 Tax=Pseudorhodobacter sp. TaxID=1934400 RepID=UPI0019C7457C) HSP 1 Score: 192 bits (487), Expect = 1.010e-57 Identity = 91/139 (65.47%), Postives = 111/139 (79.86%), Query Frame = 1
Query: 10 EKPPVRKTSDFRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKAKVQRKQAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKV 426
EK PVRK++D DR+D SL L+P ++N PYD+K ++ KV DD +FE+ PD+A+NI +GF RMEGH VGIVAN PM LAGCLDI SS KA ARFVRFCDAFNIP++TFVDVPGFLPGT+QEHGGII+HG+K+
Sbjct: 90 EKAPVRKSNDRADRIDISLDTLVPDNANKPYDIKELIVKVSDDGDFFELQPDYAKNIVIGFCRMEGHTVGIVANQPMVLAGCLDIKSSIKA-------ARFVRFCDAFNIPVVTFVDVPGFLPGTSQEHGGIIKHGAKL 221
BLAST of mRNA_Ecto-sp13_S_contig17932.5471.1 vs. uniprot
Match: A0A836CAR6_9STRA (Propionyl-CoA carboxylase beta chain mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR6_9STRA) HSP 1 Score: 195 bits (495), Expect = 3.490e-57 Identity = 93/139 (66.91%), Postives = 111/139 (79.86%), Query Frame = 1
Query: 10 EKPPVRKTSDFRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKAKVQRKQAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKV 426
E PVR T D R+R +LR ++PQD N+PYDM +VSKV+DDN +++IMPD+A+NI VGF RMEG VG+VANNP LAGCLDI+SSTK ARFVRFCD+FNIPLLTFVDVPGFLPGT QE+GGIIRHG+K+
Sbjct: 267 EAVPVRSTCDTRERAIPALRRIIPQDPNIPYDMVEIVSKVLDDNNFYQIMPDYAKNIVVGFGRMEGRTVGVVANNPSSLAGCLDINSSTKG-------ARFVRFCDSFNIPLLTFVDVPGFLPGTDQEYGGIIRHGAKL 398
BLAST of mRNA_Ecto-sp13_S_contig17932.5471.1 vs. uniprot
Match: A0A520D1F2_9BURK (Acyl-CoA carboxylase subunit beta (Fragment) n=1 Tax=Variovorax sp. TaxID=1871043 RepID=A0A520D1F2_9BURK) HSP 1 Score: 190 bits (483), Expect = 3.740e-57 Identity = 89/139 (64.03%), Postives = 112/139 (80.58%), Query Frame = 1
Query: 10 EKPPVRKTSDFRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKAKVQRKQAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKV 426
EKPPVR + D DR D SL L+P+++N PYDMK +++KVVDD +FE+ PD+A+NI +GFARMEG +GIVAN P+ LAGCLDI SS KA ARFVRFCDAFNIP++TFVDVPGF+PGT+QE+GGII+HG+K+
Sbjct: 142 EKPPVRPSGDPADRADLSLDTLVPENANKPYDMKELITKVVDDGDFFELQPDYAKNIVIGFARMEGQSIGIVANQPLVLAGCLDIKSSIKA-------ARFVRFCDAFNIPVVTFVDVPGFMPGTSQEYGGIIKHGAKL 273
BLAST of mRNA_Ecto-sp13_S_contig17932.5471.1 vs. uniprot
Match: A0A1E5QA07_9PROT (Methylmalonyl-CoA carboxyltransferase n=1 Tax=Magnetovibrio blakemorei TaxID=28181 RepID=A0A1E5QA07_9PROT) HSP 1 Score: 194 bits (492), Expect = 7.780e-57 Identity = 93/139 (66.91%), Postives = 111/139 (79.86%), Query Frame = 1
Query: 10 EKPPVRKTSDFRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKAKVQRKQAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKV 426
EKPPVR T+DF DRV+ SL L+P + N PYDMK ++ KVVD+ +FE+MP +A NI +GFARMEG VGIVAN PM LAGCLDI+SS KA ARFVR+CDAFNIP++TFVDVPGFLPGT+QEHGGII HG+K+
Sbjct: 251 EKPPVRPTADFSDRVEMSLDTLIPDNPNKPYDMKELIEKVVDEGDFFELMPKYAGNILIGFARMEGSTVGIVANQPMVLAGCLDINSSIKA-------ARFVRYCDAFNIPIVTFVDVPGFLPGTSQEHGGIITHGAKL 382
BLAST of mRNA_Ecto-sp13_S_contig17932.5471.1 vs. uniprot
Match: A0A523NTV8_9PROT (Acyl-CoA carboxylase subunit beta n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NTV8_9PROT) HSP 1 Score: 193 bits (491), Expect = 1.090e-56 Identity = 91/140 (65.00%), Postives = 113/140 (80.71%), Query Frame = 1
Query: 7 TEKPPVRKTSDFRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKAKVQRKQAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKV 426
TE+PP R T D DR++ SL L+P +SN+PYDMK +++K+VD+ +FE+ P++A+NI +GF R+ G PVGIVAN PM LAGCLDIDSS KA ARFVRFCDAFNIP++TFVDVPGFLPGTAQEHGGIIRHG+K+
Sbjct: 250 TERPPQRVTDDPPDRLEMSLDTLVPANSNLPYDMKELINKIVDEGDFFELQPEFAQNIVIGFGRLHGAPVGIVANQPMVLAGCLDIDSSCKA-------ARFVRFCDAFNIPIVTFVDVPGFLPGTAQEHGGIIRHGAKL 382
BLAST of mRNA_Ecto-sp13_S_contig17932.5471.1 vs. uniprot
Match: A0A0F2RAK7_9PROT (Methylmalonyl-CoA carboxyltransferase n=4 Tax=Rhodospirillaceae TaxID=41295 RepID=A0A0F2RAK7_9PROT) HSP 1 Score: 192 bits (489), Expect = 2.160e-56 Identity = 93/139 (66.91%), Postives = 111/139 (79.86%), Query Frame = 1
Query: 10 EKPPVRKTSDFRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKAKVQRKQAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKV 426
EKPPVR T+D DR D SL L+P + N+PYDMK +++KVVD+ ++EI PD+ARNI GFARMEG +GIVAN PM LAGCLDIDSS KA ARFVRFCDAFNIP++TFVDVPGFLPGT QE+GGII+HG+K+
Sbjct: 251 EKPPVRPTADPADREDFSLDTLIPNNPNMPYDMKELITKVVDEGDFYEIAPDYARNIITGFARMEGSTIGIVANQPMVLAGCLDIDSSRKA-------ARFVRFCDAFNIPVVTFVDVPGFLPGTTQEYGGIIKHGAKL 382
BLAST of mRNA_Ecto-sp13_S_contig17932.5471.1 vs. uniprot
Match: A0A849KBD3_9BURK (Acyl-CoA carboxylase subunit beta n=4 Tax=Comamonadaceae TaxID=80864 RepID=A0A849KBD3_9BURK) HSP 1 Score: 192 bits (488), Expect = 4.650e-56 Identity = 90/139 (64.75%), Postives = 113/139 (81.29%), Query Frame = 1
Query: 10 EKPPVRKTSDFRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKAKVQRKQAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKV 426
EKPPVR ++D DR+D SL L+P ++N PYDMK +++K VDD +FE+ PD+A+NI +GFARMEG VGIVANNP+ LAGCLDI SS KA ARFVRFCDAFNIP++TFVDVPGF+PGT+QE+GGII+HG+K+
Sbjct: 273 EKPPVRPSNDPADRMDFSLDTLIPDNANKPYDMKELITKTVDDGDFFELQPDYAKNIVIGFARMEGQSVGIVANNPLVLAGCLDIKSSIKA-------ARFVRFCDAFNIPVITFVDVPGFMPGTSQEYGGIIKHGAKL 404
BLAST of mRNA_Ecto-sp13_S_contig17932.5471.1 vs. uniprot
Match: A0A6J4FDQ3_9PROT (Propionyl-CoA carboxylase beta chain n=23 Tax=Rhodospirillaceae TaxID=41295 RepID=A0A6J4FDQ3_9PROT) HSP 1 Score: 192 bits (487), Expect = 4.710e-56 Identity = 93/139 (66.91%), Postives = 111/139 (79.86%), Query Frame = 1
Query: 10 EKPPVRKTSDFRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKAKVQRKQAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKV 426
EKPPVR T+D DR++ SL L+P ++N PYDMK ++ KVVD+ +FE+ P +A NI VGFARMEG VGIVAN PM LAGCLDIDSS KA ARFVRFCDAFNIP++TFVDVPGFLPGTAQE+GGII+HG+K+
Sbjct: 256 EKPPVRPTADAADRIEMSLDTLIPDNANKPYDMKELILKVVDEGDFFEVQPGYAGNIVVGFARMEGASVGIVANQPMVLAGCLDIDSSIKA-------ARFVRFCDAFNIPVVTFVDVPGFLPGTAQEYGGIIKHGAKL 387
BLAST of mRNA_Ecto-sp13_S_contig17932.5471.1 vs. uniprot
Match: A0A2S6SQK5_9PROT (Propionyl-CoA carboxylase beta chain n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2S6SQK5_9PROT) HSP 1 Score: 191 bits (485), Expect = 8.420e-56 Identity = 90/141 (63.83%), Postives = 113/141 (80.14%), Query Frame = 1
Query: 4 YTEKPPVRKTSDFRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFEIMPDWARNITVGFARMEGHPVGIVANNPMFLAGCLDIDSSTKAKVQRKQAARFVRFCDAFNIPLLTFVDVPGFLPGTAQEHGGIIRHGSKV 426
+ EKPPV KT+D DRV++SL ++P++SN PYDMK V+ KV+D+ +FEI ++A+NI GFAR++G PVGIVAN P+ LAGCLDIDSS KA ARFVRFCD FNIP++TFVDVPGFLPGT QE+GGII+HGSK+
Sbjct: 249 FREKPPVIKTNDKSDRVEKSLNTIVPKNSNKPYDMKEVIYKVIDNEDFFEIQENYAKNIITGFARIDGQPVGIVANQPLVLAGCLDIDSSRKA-------ARFVRFCDCFNIPIITFVDVPGFLPGTKQEYGGIIKHGSKL 382 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17932.5471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17932.5471.1 >prot_Ecto-sp13_S_contig17932.5471.1 ID=prot_Ecto-sp13_S_contig17932.5471.1|Name=mRNA_Ecto-sp13_S_contig17932.5471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp MYTEKPPVRKTSDFRDRVDESLRYLLPQDSNVPYDMKHVVSKVVDDNTYFback to top mRNA from alignment at Ecto-sp13_S_contig17932:527..2099- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17932.5471.1 ID=mRNA_Ecto-sp13_S_contig17932.5471.1|Name=mRNA_Ecto-sp13_S_contig17932.5471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1573bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17932:527..2099- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17932:527..2099- >mRNA_Ecto-sp13_S_contig17932.5471.1 ID=mRNA_Ecto-sp13_S_contig17932.5471.1|Name=mRNA_Ecto-sp13_S_contig17932.5471.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17932:527..2099- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |