mRNA_Ecto-sp13_S_contig17930.5470.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17930.5470.1
Unique NamemRNA_Ecto-sp13_S_contig17930.5470.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17930.5470.1 vs. uniprot
Match: A0A6H5KBL4_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL4_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.300e-6
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 2 
Query:   44 RQLPHWKTMTFREKIDKVFADTSKKMEEGSTG 139
            R +   +TMTFREKIDKVFADTSKKMEEGSTG
Sbjct:  234 RSMSPAQTMTFREKIDKVFADTSKKMEEGSTG 265
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BLAST of mRNA_Ecto-sp13_S_contig17930.5470.1 vs. uniprot
Match: A0A6H5KRF6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF6_9PHAE)

HSP 1 Score: 49.3 bits (116), Expect = 1.590e-5
Identity = 23/25 (92.00%), Postives = 25/25 (100.00%), Query Frame = 2 
Query:   65 TMTFREKIDKVFADTSKKMEEGSTG 139
            T+TFREKIDKVFADTSKKM+EGSTG
Sbjct:   37 TITFREKIDKVFADTSKKMDEGSTG 61
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BLAST of mRNA_Ecto-sp13_S_contig17930.5470.1 vs. uniprot
Match: A0A6H5K8R6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R6_9PHAE)

HSP 1 Score: 47.4 bits (111), Expect = 7.630e-5
Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = 2 
Query:   65 TMTFREKIDKVFADTSKKMEEGSTG 139
            TMTFREKIDK+F+DTSKKMEE STG
Sbjct:  152 TMTFREKIDKIFSDTSKKMEERSTG 176
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17930.5470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KBL4_9PHAE1.300e-681.25CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KRF6_9PHAE1.590e-592.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K8R6_9PHAE7.630e-588.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17930contigEcto-sp13_S_contig17930:294..1050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size141
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-09_002520.1
Cds size141
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462928.1042604-CDS-Ecto-sp13_S_contig17930:293..3701681462928.1042604-CDS-Ecto-sp13_S_contig17930:293..370Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17930 294..370 -
1681462928.1134884-CDS-Ecto-sp13_S_contig17930:986..10501681462928.1134884-CDS-Ecto-sp13_S_contig17930:986..1050Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17930 987..1050 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17930.5470.1prot_Ecto-sp13_S_contig17930.5470.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17930 294..1050 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17930.5470.1

>prot_Ecto-sp13_S_contig17930.5470.1 ID=prot_Ecto-sp13_S_contig17930.5470.1|Name=mRNA_Ecto-sp13_S_contig17930.5470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
MTRVLTGAIFTATSKATSTLEDDDVPREDRQGLCGYVEEDGRRIDG*
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mRNA from alignment at Ecto-sp13_S_contig17930:294..1050-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17930.5470.1 ID=mRNA_Ecto-sp13_S_contig17930.5470.1|Name=mRNA_Ecto-sp13_S_contig17930.5470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=757bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17930:294..1050- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAGGGTCCTCACGGGGGCAATCTTTACTGCGACCAGCAAGGCAAC
TTCCACACTGGAAGGTGGGTGGGAGGTGACAGGGGGGGTAACGTGACTGT
CAAGGAAGAAGGGAAGGAGGAAGAGGTGTCAAGGGAAGAAAAGACTGCCC
CGGTTGATGACAAACTCAAAACGGAGTTCCAGGATGAGTTATCGAATAAA
GAGAAGGAAATCGAAACTCTGAAGCAGAAGTTGGCTGAAATGGGAGGTCA
GTTTAAACTGCTGAGCCTCCAGGACACGGACGTAAAGCCTCAAGCAAGTG
CAACTGAACCAAGGGCGATGGAAAGTGGTTCGGTGCCTGTCCATCAAGAG
CAGGAAGAGGTGGTGTCTCAGACAGAGCCGGTAGTGACGGGTCAGAACAA
ACAGGAGGTTGTTACGATCCAGCCGTTGACCTCGAGGGAGAAACAGAAAA
TCATGATGGGCTATGTGACGATCAACATGAAGGATTGGACAAAGCTCCCT
TGGATACCACTCTCTGATTCCCCGGGAGAGTTGGTTTCTTTCATCAGAAG
GTTGGAAGATACAGTCAACGATGTGTTTTTGGCGGTGGGGGATTACAATG
GATGGTGGGTGCCAGGATGGGAAAAACCGGTGCACAGACATCTGATCACT
TCCATCACCTGATCCATGTCCCCCGCCCAGACGATGACGTTCCGCGAGAA
GATAGACAAGGTCTTTGCGGATACGTCGAAGAAGATGGAAGAAGGATCGA
CGGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17930:294..1050-

>mRNA_Ecto-sp13_S_contig17930.5470.1 ID=mRNA_Ecto-sp13_S_contig17930.5470.1|Name=mRNA_Ecto-sp13_S_contig17930.5470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17930:294..1050- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAGGGTCCTCACGGGGGCAATCTTTACTGCGACCAGCAAGGCAAC
TTCCACACTGGAAGACGATGACGTTCCGCGAGAAGATAGACAAGGTCTTT
GCGGATACGTCGAAGAAGATGGAAGAAGGATCGACGGGTAA
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