mRNA_Ecto-sp13_S_contig17920.5467.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17920.5467.1
Unique NamemRNA_Ecto-sp13_S_contig17920.5467.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17920.5467.1 vs. uniprot
Match: D7G991_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G991_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 1.240e-62
Identity = 97/107 (90.65%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    3 RHQERHAEWNTKPAFGKRVMVEFEDGFYYLGTIHTDGDSPKDIYHAKGRWGVLFDDCTKDRFHDGATDVMVSNQPRPKSISAELGDYYLKQANGRELLEGAEVVPGA 323
            RHQER AEWNTKPAFGKRVMVEFEDG YY GTI TDGDS KDIYHAKGRWGVLFDDCTKDRFHDGATDVMVSNQP P+SISAEL DYYLKQANGREL+EG EVVPGA
Sbjct:    3 RHQERLAEWNTKPAFGKRVMVEFEDGIYYPGTISTDGDSAKDIYHAKGRWGVLFDDCTKDRFHDGATDVMVSNQPSPRSISAELRDYYLKQANGRELMEGVEVVPGA 109
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BLAST of mRNA_Ecto-sp13_S_contig17920.5467.1 vs. uniprot
Match: A0A6H5KND3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KND3_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.070e-13
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3 
Query:  210 MVSNQPRPKSISAELGDYYLKQANGRELLEGAEVVPGAE 326
            MVSN+ RPKSISAE  DYYLKQANGRELLEG E++PGAE
Sbjct:    1 MVSNRTRPKSISAERRDYYLKQANGRELLEGVEIIPGAE 39
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17920.5467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G991_ECTSI1.240e-6290.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KND3_9PHAE1.070e-1382.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17920contigEcto-sp13_S_contig17920:1066..2955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size330
Hectar predicted targeting categoryother localisation
Exons3
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462927.913224-CDS-Ecto-sp13_S_contig17920:1065..11881681462927.913224-CDS-Ecto-sp13_S_contig17920:1065..1188Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17920 1066..1188 -
1681462927.9237921-CDS-Ecto-sp13_S_contig17920:2194..23641681462927.9237921-CDS-Ecto-sp13_S_contig17920:2194..2364Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17920 2195..2364 -
1681462927.9337738-CDS-Ecto-sp13_S_contig17920:2918..29551681462927.9337738-CDS-Ecto-sp13_S_contig17920:2918..2955Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17920 2919..2955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17920.5467.1prot_Ecto-sp13_S_contig17920.5467.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17920 1066..2955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17920.5467.1

>prot_Ecto-sp13_S_contig17920.5467.1 ID=prot_Ecto-sp13_S_contig17920.5467.1|Name=mRNA_Ecto-sp13_S_contig17920.5467.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
CVTRRGTPSGTPSLLSASASWWSSKMVSTTWAPSTRMGTARRTSTTPRGG
GGCFSTTALRIASTTALQTSWCPTSPDRSRSPQSLATTTSSKRTAASSWK
ERRSSQERRG
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mRNA from alignment at Ecto-sp13_S_contig17920:1066..2955-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17920.5467.1 ID=mRNA_Ecto-sp13_S_contig17920.5467.1|Name=mRNA_Ecto-sp13_S_contig17920.5467.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1890bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17920:1066..2955- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGTCACCAGGAGAGGCACGCCGAGTGGAACACCAAGTGAGTCACACGA
AACACTCTGTTTTTTCTTCTGGTGACGGGCGGGCGAATAGTTCCTCTCTT
TTCAGAAGGTCTACGGAAGCACTCCTCTCTGTCTCCCTTGGAACGCCCGT
GACATCGCGCAGCTTCTGGACGAGCCTTCAACAGCGATTGTGTTGTTTGA
TTTCCCTCTCCCTTTGATTGGACCGCGATTTGGACCCCCATGGTCGTGTG
CGGCCGTAGGGGAAGATTCCTCGGAAGGACATGATGTTTTGGATTCTGAG
TACAGAAGTAGCCGCACTTACGGTGAAGAATGAAGATGGCACGGTTTCAG
CCCGCCCTGCCTTACCGCAGCCCGAATTCAGTTGGACGGGGCAAAAACAA
CTTTGAGAAGGTGGATTTACATCGGGACTGCCAATCTTCCCCTCGTAAAT
TAGGAGTAATCGATCTCGGAAAATCGATCCGGGGAGCGCGGTGTATTATT
TCAACGGCACCTACGTACGTGGTACTACACGCACCAGCAATAACCCGGTT
GCCCCCCTCGCGCCCGCTCAAAACGTATTTGGCGGCGGCAGGCCTGCTTT
CGGCAAGCGCGTCATGGTGGAGTTCGAAGATGGTTTCTACTACCTGGGCA
CCATCCACACGGATGGGGACAGCCCGAAGGACATCTACCACGCCAAGGGG
AGGTGGGGGGTGCTTTTCGACGACTGCACTAAGGATCGCTTCCACGACGG
CGCTACAGACGGTGAACCTGTTTTTTAGAGCCTTTACCAAGTAGCTCAGC
GAGCGCTTCCGGTGCACGGATGGACCAATAAGCTGTGATAGCGCGGCATC
CTTTTTTCTACTGCTGCAGCAACAGCGGCGCGCTGTAGTATTGGTCGCAC
TATGTGGTAGCTCACCCGGGGCTGATCTTCAAGTGGGCGGATGCCTTTAT
GCGGTGCTTTCGTGGTCCTTGTCTGCACAAGCGCTAACGGGGATGAGCCG
AACTTGCTCTCAGCCCCTGGGCGTCGCACGAATTTGTCTTCCCGTGTCAT
TCTTCGTTTGACCTATAGCCCTTGTCCAGGCCACTTCCACTGCTCGTCAT
TCTGTCAACAAAGTTATCCGGTCGCTGTGTTTTTTTGATTGACCGGCTCT
GTGATAACTGTAGTGGATGGCCCACTTTTGTGATGGGTGTTGTGGATGAC
GAATTTTTTGCTGCAGTTGATTTTCGACCATCGACAACAACACAGCCACA
ACAACGACAACAACAACAACATCCAATAGCTGGCAACGACCGGTAGATTT
TCACTCGTTTTGCCCCGTGACGGATTATATGTTGTCTCGGCAGACCTCCT
CAACCACAAGTGGTACCAAAGCTGCCCCCCTCCCTCCCGGAGGCTTTTTT
TGTACGGCGATATGGCGGCTGATATTTACAGACCATGAATTGTTAGGACG
TTCAGAGATTGAGTGATGCAAGTCTAGAGCATACGAAGAAGGGCCTGCTG
AAACGCTGCTGCGTAGAGCTCTCTTGACCCGCTTTCCACACACCTCGGGT
TGATGTCATCCAAGTACGGTCGAATGAAGAAGAAACGGCTGTAGTACGAC
GACGCTCTCCGCTCTGAGCTGACACATGGCGCAAACGCGAAAAAGGCGGA
GGGTTGGCAGCCTTTGGACGAGGCCGTTGACGCCCCATGTTGCCTGCAAC
GCGCGATGATGAACGCCGAACCCCCCGCGCCCGTTGTTCCCGTCTCCTTG
ACCCCCCACTCGCGCAGTCATGGTGTCCAACCAGCCCAGACCGAAGTCGA
TCTCCGCAGAGCTTGGCGACTACTACCTCAAGCAAGCGAACGGCCGCGAG
CTCCTGGAAGGAGCGGAGGTCGTCCCAGGAGCGGAGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17920:1066..2955-

>mRNA_Ecto-sp13_S_contig17920.5467.1 ID=mRNA_Ecto-sp13_S_contig17920.5467.1|Name=mRNA_Ecto-sp13_S_contig17920.5467.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17920:1066..2955- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGTCACCAGGAGAGGCACGCCGAGTGGAACACCAAGCCTGCTTTCGGC
AAGCGCGTCATGGTGGAGTTCGAAGATGGTTTCTACTACCTGGGCACCAT
CCACACGGATGGGGACAGCCCGAAGGACATCTACCACGCCAAGGGGAGGT
GGGGGGTGCTTTTCGACGACTGCACTAAGGATCGCTTCCACGACGGCGCT
ACAGACGTCATGGTGTCCAACCAGCCCAGACCGAAGTCGATCTCCGCAGA
GCTTGGCGACTACTACCTCAAGCAAGCGAACGGCCGCGAGCTCCTGGAAG
GAGCGGAGGTCGTCCCAGGAGCGGAGGGGG
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