mRNA_Ecto-sp13_S_contig17907.5459.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17907.5459.1
Unique NamemRNA_Ecto-sp13_S_contig17907.5459.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17907.5459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17907contigEcto-sp13_S_contig17907:221..3514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1856
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_007530.2
Cds size1617
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17907.5459.1prot_Ecto-sp13_S_contig17907.5459.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17907 444..3498 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462927.161177-UTR-Ecto-sp13_S_contig17907:220..4431681462927.161177-UTR-Ecto-sp13_S_contig17907:220..443Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17907 221..443 -
1681462927.2154746-UTR-Ecto-sp13_S_contig17907:3498..35141681462927.2154746-UTR-Ecto-sp13_S_contig17907:3498..3514Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17907 3499..3514 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462927.1769333-CDS-Ecto-sp13_S_contig17907:443..13631681462927.1769333-CDS-Ecto-sp13_S_contig17907:443..1363Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17907 444..1363 -
1681462927.1866717-CDS-Ecto-sp13_S_contig17907:2023..24201681462927.1866717-CDS-Ecto-sp13_S_contig17907:2023..2420Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17907 2024..2420 -
1681462927.1984658-CDS-Ecto-sp13_S_contig17907:2919..30761681462927.1984658-CDS-Ecto-sp13_S_contig17907:2919..3076Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17907 2920..3076 -
1681462927.2068627-CDS-Ecto-sp13_S_contig17907:3355..34981681462927.2068627-CDS-Ecto-sp13_S_contig17907:3355..3498Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17907 3356..3498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17907.5459.1

>prot_Ecto-sp13_S_contig17907.5459.1 ID=prot_Ecto-sp13_S_contig17907.5459.1|Name=mRNA_Ecto-sp13_S_contig17907.5459.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=539bp
MLGENDSLSVLDLSRNHLGKSAAMSIASGLRRNRGLRTLKLGWNKLGREG
TLCVIRAIGGNPGPLQLEVLRLENTTDAGMEFEAAREADSVVATRSQWVE
VVCEYPDRSRTKGNSHTGPISWMNEHPPDVDLNTAYKTRPEKEYDENMEY
LANAQPPKTPSSRKTTSGRGGDVNASGAATALGDKNRSVAQLASLRQATA
FSAPPPTLCXXXXXXXXXXXXXXXXXXXXXXXXAVAVPVLSVRLKLRARE
EARLEAERMAAAEAAAAEKEARKTPSTLSYLKPLDKTVKERTLVEPPSRL
VLLGKAGMGTHSSVKLRAKSGWRSSSGERHGTARGLFEQRNGRGNRYARS
SPSGPGNVQVMSSNSRGRSPNGTCHSVRGRVQYKGIQSARGRLQHCNRPW
THVKSTGQSARGRSSSSNRRFDSRGSSSPRQGVRSSTTSRRRRTTRKGWL
GHAPPARRSSSRNSRRPAASGTRGHRKSGNSNGLRTGVRPGRGSPTSPRS
PPWLSMSALAKQEHLARPSRVKLRGEDGFSLGMQGPRT*
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mRNA from alignment at Ecto-sp13_S_contig17907:221..3514-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17907.5459.1 ID=mRNA_Ecto-sp13_S_contig17907.5459.1|Name=mRNA_Ecto-sp13_S_contig17907.5459.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17907:221..3514- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGACTGTCGGCAATATGCTGGGAGAAAACGACTCCTTGTCAGTGCTGG
ATCTCAGTAGGAACCACCTGGGAAAATCCGCGGCCATGAGCATCGCGAGC
GGTCTCAGGAGAAATAGAGGCTTGAGGACGCTAAAGTTGGGATGGAATAA
ACTCGGGAGGTGCGAGCGAATGTTAAGGTAGTTCAACTGTATGTCTACCT
CGTATGACGTGGATGAATCACTCGCGTACAGTGATCGCCTTGACAAAGCC
GCTAAACAACGGTACAGAGCATCTGACTCGTGAGCGCTGCATTATACACT
GCTGTGGATTGGTTGTGTTTGGTCGGGGATACCCGGAATAGCTGTGCGAG
ATTATCATCTCAATTTACTCATGATCGGAGGCAAGGTAAAACACGGAACC
CTGGTAACCAGAGAAAATTATTTGGCTTTCACCGCCAGGGAAGGTACTCT
TTGCGTCATCAGAGCAATCGGGGGCAACCCAGGACCGCTACAACTAGAAG
TTCTCCGACTGGAAAACACCACTGATGCAGGCATGGAGTTTGAAGCTGCC
CGTGAGGCAGATTCCGTCGTTGCGACGAGATCTCAATGGGTCGAGGTGCG
AAATGGTGCTGCTGCTGTCGGCTTACAGTTCTTGTGCTTGGCCCTGTCCT
TAACGTCCCTTACCTCCTCTCTATCACTAGCAGACTGCACTGTCACAGGA
TCCCTTGAAGTAGTTGTACGCTGTTGAAGACTAGGAAGTGTGGAAGAAGA
CGGTATAGGAGGTAATGCAGCGACTGGGAGAAGGACGTCGGCAAGCGCAC
GTCTCAGGACCCTAGGATCATCGGGGGAGATATACTCGAGGCGCGGCGGT
GTCATGGGCTCAAATCTTGGATGAATGATGCGGTCCATTCTCGGCTCGTA
CAAGGAACTAGTACACGGTCGCAACAATCCAGAGATTCAGCTTCAAAAAG
TCTCGTAATTCTTGGTACCTTTCGTTCACGTTGTGCATGCCCGCGCACAT
ATTCTCCACGCCGCTGGTTTACCATCTTCTGAATACCCGAATCGGTTGCA
CGTCCACCTTCAACAATATCTTTGACATGGCGGAAACGCAGCAGGTCGTG
TGCGAATACCCTGACCGATCAAGGACTAAGGGCAATTCCCATACGGGACC
AATCTCCTGGATGAATGAACACCCCCCGGACGTGGATCTGAACACCGCAT
ACAAAACTCGACCGGAGAAGGAGTACGACGAAAACATGGAGTACCTGGCG
AACGCCCAACCTCCAAAGACGCCTTCCTCTAGAAAGACGACCTCTGGCCG
AGGCGGCGACGTCAACGCTAGCGGGGCGGCGACTGCTCTTGGCGACAAGA
ATCGCTCGGTTGCACAGCTGGCAAGCCTTCGGCAAGCAACGGCATTTTCA
GCGCCACCGCCGACACTATGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATCACACCA
AGCCACCTCTCTCTCTGTCGCTATACCATCCCGACTCCACCCGTAACGAT
ATATGCCCGATGTATATCGCGCCGTTCTTTTTATCGTGTCCCCGTCCGCC
CAGGCTGTTGCCGTCCCCGTGCTTTCCGTGAGGCTGAAGCTGAGAGCTAG
AGAAGAGGCAAGGCTTGAAGCAGAGCGGATGGCAGCGGCGGAGGCGGCCG
CTGCCGAGAAGGAAGCGAGAAAGACACCGAGCACATTGTCGTATCTGAAG
CCTCTGGACAAGACTGTCAAGGAGAGAACGCTGGTGGAGCCTCCGTCAAG
ACTAGTACTACTAGGGAAGGCCGGCATGGGAACCCATAGTTCCGTGAAGC
TAAGAGCTAAATCCGGATGGAGGAGTTCATCGGGGGAGCGCCACGGCACA
GCACGAGGACTCTTCGAACAAAGGAACGGGCGAGGAAATAGATACGCCAG
GAGTAGCCCCAGTGGACCCGGGAATGTACAAGTCATGAGCAGCAACTCGA
GGGGACGCAGTCCGAATGGAACCTGTCACAGTGTGCGAGGGCGTGTACAA
TACAAGGGCATTCAGAGTGCGCGTGGGCGGTTGCAACACTGCAACCGTCC
ATGGACACACGTGAAGAGCACTGGCCAGAGTGCGAGAGGGCGGAGCAGCA
GCAGCAACCGTAGGTTCGATTCACGTGGAAGTAGCAGTCCGAGGCAAGGT
GTGCGGAGCAGCACAACGAGCCGGAGAAGACGGACTACGAGGAAGGGTTG
GCTAGGACATGCTCCCCCCGCTCGTAGGAGTAGCAGTAGAAACAGTAGGC
GGCCAGCCGCGAGTGGCACTCGTGGACATCGTAAGAGTGGCAACAGCAAC
GGTCTCCGTACGGGTGTAAGGCCTGGGAGAGGTAGTCCCACGTCACCCCG
TAGCCCGCCGTGGCTCTCGATGAGCGCACTAGCGAAGCAAGAGCACCTAG
CTCGCCCGTCTCGCGTAAAGCTGCGAGGGGAGGACGGCTTCTCCCTCGGT
ATGCAAGGACCACGGACGTAAATTGGGTAAGATAGCTGATGCGTGTCAAT
GTTCGGTGGCCGGCAAAACCTGCATGGCTGTTTTCTACACAGCGATTTTG
CTCCCAAATTTTCCAAATTCCCAAATGCGTTGAACTTTGATTTGCAACCG
AGGAAGAATTTCGGAGTCAAAAAAAAAATAGAAGCAAAACGCTGTGTAAA
ATTGGAACGGAGTCTTTGTACCAGAGGGTACTTTGAGGCGCGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17907:221..3514-

>mRNA_Ecto-sp13_S_contig17907.5459.1 ID=mRNA_Ecto-sp13_S_contig17907.5459.1|Name=mRNA_Ecto-sp13_S_contig17907.5459.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1617bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17907:221..3514- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGGAGAAAACGACTCCTTGTCAGTGCTGGATCTCAGTAGGAACCA
CCTGGGAAAATCCGCGGCCATGAGCATCGCGAGCGGTCTCAGGAGAAATA
GAGGCTTGAGGACGCTAAAGTTGGGATGGAATAAACTCGGGAGGGAAGGT
ACTCTTTGCGTCATCAGAGCAATCGGGGGCAACCCAGGACCGCTACAACT
AGAAGTTCTCCGACTGGAAAACACCACTGATGCAGGCATGGAGTTTGAAG
CTGCCCGTGAGGCAGATTCCGTCGTTGCGACGAGATCTCAATGGGTCGAG
GTCGTGTGCGAATACCCTGACCGATCAAGGACTAAGGGCAATTCCCATAC
GGGACCAATCTCCTGGATGAATGAACACCCCCCGGACGTGGATCTGAACA
CCGCATACAAAACTCGACCGGAGAAGGAGTACGACGAAAACATGGAGTAC
CTGGCGAACGCCCAACCTCCAAAGACGCCTTCCTCTAGAAAGACGACCTC
TGGCCGAGGCGGCGACGTCAACGCTAGCGGGGCGGCGACTGCTCTTGGCG
ACAAGAATCGCTCGGTTGCACAGCTGGCAAGCCTTCGGCAAGCAACGGCA
TTTTCAGCGCCACCGCCGACACTATGCGGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGG
CTGTTGCCGTCCCCGTGCTTTCCGTGAGGCTGAAGCTGAGAGCTAGAGAA
GAGGCAAGGCTTGAAGCAGAGCGGATGGCAGCGGCGGAGGCGGCCGCTGC
CGAGAAGGAAGCGAGAAAGACACCGAGCACATTGTCGTATCTGAAGCCTC
TGGACAAGACTGTCAAGGAGAGAACGCTGGTGGAGCCTCCGTCAAGACTA
GTACTACTAGGGAAGGCCGGCATGGGAACCCATAGTTCCGTGAAGCTAAG
AGCTAAATCCGGATGGAGGAGTTCATCGGGGGAGCGCCACGGCACAGCAC
GAGGACTCTTCGAACAAAGGAACGGGCGAGGAAATAGATACGCCAGGAGT
AGCCCCAGTGGACCCGGGAATGTACAAGTCATGAGCAGCAACTCGAGGGG
ACGCAGTCCGAATGGAACCTGTCACAGTGTGCGAGGGCGTGTACAATACA
AGGGCATTCAGAGTGCGCGTGGGCGGTTGCAACACTGCAACCGTCCATGG
ACACACGTGAAGAGCACTGGCCAGAGTGCGAGAGGGCGGAGCAGCAGCAG
CAACCGTAGGTTCGATTCACGTGGAAGTAGCAGTCCGAGGCAAGGTGTGC
GGAGCAGCACAACGAGCCGGAGAAGACGGACTACGAGGAAGGGTTGGCTA
GGACATGCTCCCCCCGCTCGTAGGAGTAGCAGTAGAAACAGTAGGCGGCC
AGCCGCGAGTGGCACTCGTGGACATCGTAAGAGTGGCAACAGCAACGGTC
TCCGTACGGGTGTAAGGCCTGGGAGAGGTAGTCCCACGTCACCCCGTAGC
CCGCCGTGGCTCTCGATGAGCGCACTAGCGAAGCAAGAGCACCTAGCTCG
CCCGTCTCGCGTAAAGCTGCGAGGGGAGGACGGCTTCTCCCTCGGTATGC
AAGGACCACGGACGTAA
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