mRNA_Ecto-sp13_S_contig179.5452.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig179.5452.1
Unique NamemRNA_Ecto-sp13_S_contig179.5452.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig179.5452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig179contigEcto-sp13_S_contig179:3608..5714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size655
Hectar predicted targeting categoryother localisation
Exons4
Cds size534
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462926.1142054-UTR-Ecto-sp13_S_contig179:3607..37271681462926.1142054-UTR-Ecto-sp13_S_contig179:3607..3727Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig179 3608..3727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462926.1277976-CDS-Ecto-sp13_S_contig179:3727..39721681462926.1277976-CDS-Ecto-sp13_S_contig179:3727..3972Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig179 3728..3972 +
1681462926.1445835-CDS-Ecto-sp13_S_contig179:4440..44771681462926.1445835-CDS-Ecto-sp13_S_contig179:4440..4477Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig179 4441..4477 +
1681462926.155967-CDS-Ecto-sp13_S_contig179:4737..49111681462926.155967-CDS-Ecto-sp13_S_contig179:4737..4911Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig179 4738..4911 +
1681462926.1744342-CDS-Ecto-sp13_S_contig179:5636..57141681462926.1744342-CDS-Ecto-sp13_S_contig179:5636..5714Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig179 5637..5714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig179.5452.1prot_Ecto-sp13_S_contig179.5452.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig179 3728..5714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig179.5452.1

>prot_Ecto-sp13_S_contig179.5452.1 ID=prot_Ecto-sp13_S_contig179.5452.1|Name=mRNA_Ecto-sp13_S_contig179.5452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp
MTKHEQYESVGSTIPKADMYQSCPSPSPSVTSVLTTGNNEPPKQAEEHEG
EGACDGSFSGQHEHEHASLPSGMPKMFAIASRIQPSEEVKIGARVLGIWR
ALAKRRAEERHALRHKARNAQQMEFFEATRNITRAGRHTFRNPVQSSAFI
LEVAFTWWKNAIRSLQRTKRRRKEALTR
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mRNA from alignment at Ecto-sp13_S_contig179:3608..5714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig179.5452.1 ID=mRNA_Ecto-sp13_S_contig179.5452.1|Name=mRNA_Ecto-sp13_S_contig179.5452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2107bp|location=Sequence derived from alignment at Ecto-sp13_S_contig179:3608..5714+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTGCGTGTATCCGACTAAACACCCCGCACCTCAGAACTCTACCGTGTGT
GATCGCTGCACTTAGGACAATTCGGAGATAGAGAGTATCGTTGGTGGTGG
CTTACAATATTTCTGAGGAAATGACGAAGCATGAGCAGTATGAATCTGTG
GGAAGCACGATTCCGAAAGCAGATATGTACCAATCTTGCCCATCTCCGTC
GCCGAGCGTAACAAGCGTTTTGACTACGGGTAATAACGAGCCCCCAAAAC
AAGCTGAGGAGCATGAGGGTGAAGGCGCCTGTGATGGGAGCTTTAGCGGA
CAGCATGAGCATGAGCATGCGTCCCTGCCGTCGGGAATGCCAAAGATGTT
TGCTATTGCCAGCAGGTGCGTGGTTTTTTGTCAACGGGCGGTATATTATT
TCGACATGACGGATCCATCTCCATCTGCTGTAAGAAAGAGTTCGAAGATA
TATTTTTAAATTCTAAAACAAGATCTCTACATGTGTGAGGTTTGATTGGA
AATTCTATGTGCCAGATAGCCTGGCAGCAGTACTGTAACACGAGAGAAGG
CATTGTATGGAGGTCAGCAGCAATGAAAGTATTGTGCGATTTCTATGGGA
TTTGGGAGCGTGGACAATAAACCTACTTTGATTCGTCTCGTTGGAGGCAG
ATTCGACACCACAATGAGACCGTGCGAATGATAGACCGTTAGTGAGTACG
AACAATAGGCACCATGCGCTCCCACGCACCAAGTGTCCTGCCTTTGTGGT
AGGGTCGGATAGTGGAGAACATAGCCTCAAATCTTACGCTCGCTGGAACG
TTCCGGTTGCTGCATGCCTCTCACCCTTAACAGGATTCAACCAAGTGAGG
AGGTCAAGATCGGGGCGCGGGTGAGGATTACTTTTCCGGGCGTATTTTTT
ACTCGTAGGAACGAGTCACCCCCCAAACCTTGTAGTGTGTGTAGCCACAA
AATTAGGACGGACTAGTCTATACCGCTGGAAGGTACAGCAGTACTTTTTC
TGGAGTGTACCGTAACGTACCGAATCCATCTGCATTCAAACTTCAAACTG
CCCTGTTTTTCGTGGACAAGGGATAGATTAGAAACTTCGTGATTTTCCGA
CACACAGCTTGGGACCAACATAATCGACAGGTGTTGGGGATCTGGCGAGC
CTTAGCTAAGCGTCGTGCCGAAGAAAGACATGCTCTGAGACACAAAGCAA
GGAACGCGCAACAAATGGAATTCTTTGAAGCAACCCGTAATATCACCAGA
GCTGGCAGACACACGTTTAGAAATCCTGTTCAGAGCTCGGCCTTCATTCT
TGAGGTAAGTGCATGTTTCTGCATCTCACAAGAAAAAGTGTGTACAACAA
AGGTAGACTCTTCGTTTCGTGCATACTTGCTGCTGTTGCTATCACGCGTG
CTAAGTTCGCTTGTGGGTTCCACAGGCACGCTGTTGTGTTGCCGCCCTAT
CCCCGACATAGGGTACCGGGCTGCTTTGCTTTCGATACGATTCTTGTTGG
TTCTGGAACGATGTTGCCACATTCTTATTTGGGTCACATTAAGTCTAAAC
AACCACGGATTACTCATTCGAGAAAATACCACAGTCGAAGGGGATGTATT
GGAAGACTTTGTCGAGGCTCGGGGTGCCAAATTCATCACAGTTTAGGAAC
AATATTTCTCTATCAGAACAGTTGTTTTTGTCATTTTTTCGGAACAAATA
AACGCAGGAAACACACTTGGCATAGTACGAGGGTATAGACCAACTCAAAA
GTGCGATCTACACCGGTGGCAAGTACGGCACGTTGAAAATGACATCACTA
ACAAAGTAGGGTTGCATATATTGAAAGGGTTCGCTCTATTCGGTGTGTTC
CAGCGCCGATCGTCTTGCTCGCCTGACACACTTCTCTAGGCCATGAAAAA
CGTCATTGTCATTGGATGTTCTAGGCCTTTCACACCACAGACAACCGAGG
CGACCTACCAGTTTGCAGCAAAACAAAACGCTGCTCTACACGATGCGTTT
GCAACATGATGCGGCCGTACCGACGACAGGTGGCCTTCACTTGGTGGAAG
AATGCAATCAGAAGCCTCCAAAGAACTAAGCGTCGTAGGAAAGAAGCCCT
CACACGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig179:3608..5714+

>mRNA_Ecto-sp13_S_contig179.5452.1 ID=mRNA_Ecto-sp13_S_contig179.5452.1|Name=mRNA_Ecto-sp13_S_contig179.5452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig179:3608..5714+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAAGCATGAGCAGTATGAATCTGTGGGAAGCACGATTCCGAAAGC
AGATATGTACCAATCTTGCCCATCTCCGTCGCCGAGCGTAACAAGCGTTT
TGACTACGGGTAATAACGAGCCCCCAAAACAAGCTGAGGAGCATGAGGGT
GAAGGCGCCTGTGATGGGAGCTTTAGCGGACAGCATGAGCATGAGCATGC
GTCCCTGCCGTCGGGAATGCCAAAGATGTTTGCTATTGCCAGCAGGATTC
AACCAAGTGAGGAGGTCAAGATCGGGGCGCGGGTGTTGGGGATCTGGCGA
GCCTTAGCTAAGCGTCGTGCCGAAGAAAGACATGCTCTGAGACACAAAGC
AAGGAACGCGCAACAAATGGAATTCTTTGAAGCAACCCGTAATATCACCA
GAGCTGGCAGACACACGTTTAGAAATCCTGTTCAGAGCTCGGCCTTCATT
CTTGAGGTGGCCTTCACTTGGTGGAAGAATGCAATCAGAAGCCTCCAAAG
AACTAAGCGTCGTAGGAAAGAAGCCCTCACACGG
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