mRNA_Ecto-sp13_S_contig1789.5448.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Match: D7FN51_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN51_ECTSI) HSP 1 Score: 544 bits (1402), Expect = 1.070e-190 Identity = 287/304 (94.41%), Postives = 290/304 (95.39%), Query Frame = 1
Query: 1 VQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRKGWGARHGTPAAIDAIRQRFPGPSSSSTPFVAAGGAGYAATLPILSAAAKEGYDGGGFVPPLSTSRSNAEEEEYEGQXXXXXXXXXXXNGYYHGGGDGRGNDSESPIRRMKHGVEDPLASVQEHSPPPPPRRWQEPQPTAGEVPSWLGKSSLGSSRLPAATPKSAVTASAGRAPLPDAEQYYEEGLEEEGGVWGEESAGMEETTDWSNSGAVV 912
VQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRKGWGARHGTPAAI+AIR+RFPGPSSSSTPFVAAGGAGYAATLPILSAAA EGYDGGGFVPP STSR NAEE XXXXXXXXXXX YHGGGDGRG DSESP+RRMKHGVEDPLASVQEHSPPPPPRRWQEPQPTAGEVPSWLGKSSLGSSRLPAATPKSAVT SAGRAPLPDAEQYYEEGLEEEGGVWGEESAGMEETTDWSNSGAVV
Sbjct: 255 VQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRKGWGARHGTPAAINAIRKRFPGPSSSSTPFVAAGGAGYAATLPILSAAATEGYDGGGFVPPPSTSRPNAEEXXXXXXXXXXXXXXXXXXXXYHGGGDGRGYDSESPVRRMKHGVEDPLASVQEHSPPPPPRRWQEPQPTAGEVPSWLGKSSLGSSRLPAATPKSAVTTSAGRAPLPDAEQYYEEGLEEEGGVWGEESAGMEETTDWSNSGAVV 558
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Match: A0A835YKQ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKQ1_9STRA) HSP 1 Score: 108 bits (269), Expect = 1.060e-22 Identity = 53/99 (53.54%), Postives = 66/99 (66.67%), Query Frame = 1
Query: 13 QLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRK-GWGARHGTPA 306
++ VPD A CMVCS FN+V RRHHCRRCG C+CG CS VSDKV+ + + G V + EPVR CT CTRV+D+ LA AL ++ G G +HG A
Sbjct: 356 EMRVPDRTALACMVCSAMFNIVRRRHHCRRCGACVCGACSAVKVSDKVMVQDFSGGPVRYVKETEPVRTCTRCTRVVDEALARALSKRVGGGRKHGPGA 454
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Match: A0A7S2XYB4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYB4_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 8.340e-18 Identity = 42/102 (41.18%), Postives = 59/102 (57.84%), Query Frame = 1
Query: 1 VQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRL-------------SSGEPVRCCTPCTRVLDQQLAHAL 267
V+ Q WVPDSVA CMVC F ++ RRHHCRRCG C+CG+CS +++KVL + +I L +S VR C CT ++D+++A +L
Sbjct: 21 VKRRQEWVPDSVAPCCMVCGSVFGMLRRRHHCRRCGACVCGYCSSATITEKVLRTDPRNDEIISLMTVAGPTPDGGAAASEALVRVCAKCTVLIDRRIATSL 122
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Match: A0A1D2MG42_ORCCI (Pleckstrin y domain-containing family F member 2 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2MG42_ORCCI) HSP 1 Score: 73.2 bits (178), Expect = 2.310e-11 Identity = 43/119 (36.13%), Postives = 57/119 (47.90%), Query Frame = 1
Query: 4 QNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRKGWGARHGTPAAIDAIRQRFPGPSSSSTP 360
Q+ +WVPDS AA C VC PF V RRHHCR+CG+ +CG CS ++ L NQ S +P+R C PC + + Q W + D+ + PS SS P
Sbjct: 144 QHAAVWVPDSEAAACQVCRNPFTFVNRRHHCRKCGSVICGPCS----KNRALLPNQ---------SKKPLRVCNPCHNSVSGKNQDGNQNS-WAGNADSSGEDDSDDEGEENPSWSSAP 248
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Match: A0A7S3XR58_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR58_HETAK) HSP 1 Score: 69.7 bits (169), Expect = 1.100e-9 Identity = 29/49 (59.18%), Postives = 33/49 (67.35%), Query Frame = 1
Query: 13 QLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVL 159
+ WVPDSVA CMVC F L RRHHCRRCG C+C CS + V+D L
Sbjct: 380 EAWVPDSVAPACMVCGAAFGLFTRRHHCRRCGACVCAGCSASRVTDPAL 428
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Match: A0A418B4W1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B4W1_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 2.410e-9 Identity = 34/84 (40.48%), Postives = 44/84 (52.38%), Query Frame = 1
Query: 16 LWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHAL 267
+W+PDSV+ C C + F L+LRRHHCRRCG +CG CS +++ + PVR C C RVLD AL
Sbjct: 350 VWIPDSVSEECSQCRKAFRLLLRRHHCRRCGFVVCGLCSEHR-------------SILFDNDMRPVRVCNKCNRVLDLVKQSAL 420
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Match: A0A024UQR4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQR4_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 3.000e-9 Identity = 34/84 (40.48%), Postives = 44/84 (52.38%), Query Frame = 1
Query: 16 LWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHAL 267
+W+PDSV+ C C + F L+LRRHHCRRCG +CG CS +++ + PVR C C RVLD AL
Sbjct: 422 VWIPDSVSEECSQCRKAFRLLLRRHHCRRCGFVVCGLCSEHR-------------SILFDNDMRPVRVCNKCNRVLDLVKQSAL 492
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Match: A0A7S0MGZ5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MGZ5_9CRYP) HSP 1 Score: 66.2 bits (160), Expect = 3.520e-9 Identity = 46/152 (30.26%), Postives = 68/152 (44.74%), Query Frame = 1
Query: 19 WVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQ--QLAHALQRKGWGARHGTPAAIDAIRQRFPGPSSSS---TPFVAAGGAGYAATLPILSAAAKEGYDGGGFVPPL 459
W PD C CS+ FN++ RRHHCR CG +CG C N+ ++++ EPVR C C Q +L A+ G+ A++A+ P+ S+ TPF+ A G+ + +L + G D VPPL
Sbjct: 9 WQPDKSTKTCSTCSKRFNVLQRRHHCRHCGRVICGSCGK----------NKHRVSLLKFGYHEPVRVCVSCHERCTQAEELMAAISGNGF-------VALEALLDAGADPNFSTLVFTPFMHAAAKGHTKLMQLLG---ERGADTAYHVPPL 140
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Match: A0A3R7B1W5_9STRA (FYVE-type domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7B1W5_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 4.100e-9 Identity = 34/84 (40.48%), Postives = 44/84 (52.38%), Query Frame = 1
Query: 16 LWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHAL 267
+W+PDSVA C C +PF L+ RRHHCRRCG +CG CS +++ + PVR CT C VL + AL
Sbjct: 460 VWIPDSVAEECSQCGKPFRLLWRRHHCRRCGFVVCGHCSEHR-------------SILFDNDPRPVRVCTTCHNVLTKVKECAL 530
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Match: A0A6A5ASZ2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ASZ2_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 4.260e-9 Identity = 34/84 (40.48%), Postives = 44/84 (52.38%), Query Frame = 1
Query: 16 LWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHAL 267
+W+PDSVA C C +PF L+ RRHHCRRCG +CG CS +++ + PVR CT C VL + AL
Sbjct: 424 VWIPDSVAEECSQCGKPFRLLWRRHHCRRCGFVVCGHCSEHR-------------SILFDNDPRPVRVCTTCHNVLTKVKECAL 494 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1789.5448.1 >prot_Ecto-sp13_S_contig1789.5448.1 ID=prot_Ecto-sp13_S_contig1789.5448.1|Name=mRNA_Ecto-sp13_S_contig1789.5448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=305bp VQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDback to top mRNA from alignment at Ecto-sp13_S_contig1789:11..2109+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1789.5448.1 ID=mRNA_Ecto-sp13_S_contig1789.5448.1|Name=mRNA_Ecto-sp13_S_contig1789.5448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2099bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1789:11..2109+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1789:11..2109+ >mRNA_Ecto-sp13_S_contig1789.5448.1 ID=mRNA_Ecto-sp13_S_contig1789.5448.1|Name=mRNA_Ecto-sp13_S_contig1789.5448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=915bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1789:11..2109+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |