mRNA_Ecto-sp13_S_contig1789.5448.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1789.5448.1
Unique NamemRNA_Ecto-sp13_S_contig1789.5448.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Match: D7FN51_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN51_ECTSI)

HSP 1 Score: 544 bits (1402), Expect = 1.070e-190
Identity = 287/304 (94.41%), Postives = 290/304 (95.39%), Query Frame = 1
Query:    1 VQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRKGWGARHGTPAAIDAIRQRFPGPSSSSTPFVAAGGAGYAATLPILSAAAKEGYDGGGFVPPLSTSRSNAEEEEYEGQXXXXXXXXXXXNGYYHGGGDGRGNDSESPIRRMKHGVEDPLASVQEHSPPPPPRRWQEPQPTAGEVPSWLGKSSLGSSRLPAATPKSAVTASAGRAPLPDAEQYYEEGLEEEGGVWGEESAGMEETTDWSNSGAVV 912
            VQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRKGWGARHGTPAAI+AIR+RFPGPSSSSTPFVAAGGAGYAATLPILSAAA EGYDGGGFVPP STSR NAEE      XXXXXXXXXXX   YHGGGDGRG DSESP+RRMKHGVEDPLASVQEHSPPPPPRRWQEPQPTAGEVPSWLGKSSLGSSRLPAATPKSAVT SAGRAPLPDAEQYYEEGLEEEGGVWGEESAGMEETTDWSNSGAVV
Sbjct:  255 VQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRKGWGARHGTPAAINAIRKRFPGPSSSSTPFVAAGGAGYAATLPILSAAATEGYDGGGFVPPPSTSRPNAEEXXXXXXXXXXXXXXXXXXXXYHGGGDGRGYDSESPVRRMKHGVEDPLASVQEHSPPPPPRRWQEPQPTAGEVPSWLGKSSLGSSRLPAATPKSAVTTSAGRAPLPDAEQYYEEGLEEEGGVWGEESAGMEETTDWSNSGAVV 558          
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Match: A0A835YKQ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKQ1_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.060e-22
Identity = 53/99 (53.54%), Postives = 66/99 (66.67%), Query Frame = 1
Query:   13 QLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRK-GWGARHGTPA 306
            ++ VPD  A  CMVCS  FN+V RRHHCRRCG C+CG CS   VSDKV+  + + G V  +   EPVR CT CTRV+D+ LA AL ++ G G +HG  A
Sbjct:  356 EMRVPDRTALACMVCSAMFNIVRRRHHCRRCGACVCGACSAVKVSDKVMVQDFSGGPVRYVKETEPVRTCTRCTRVVDEALARALSKRVGGGRKHGPGA 454          
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Match: A0A7S2XYB4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYB4_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 8.340e-18
Identity = 42/102 (41.18%), Postives = 59/102 (57.84%), Query Frame = 1
Query:    1 VQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRL-------------SSGEPVRCCTPCTRVLDQQLAHAL 267
            V+  Q WVPDSVA  CMVC   F ++ RRHHCRRCG C+CG+CS   +++KVL  +     +I L             +S   VR C  CT ++D+++A +L
Sbjct:   21 VKRRQEWVPDSVAPCCMVCGSVFGMLRRRHHCRRCGACVCGYCSSATITEKVLRTDPRNDEIISLMTVAGPTPDGGAAASEALVRVCAKCTVLIDRRIATSL 122          
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Match: A0A1D2MG42_ORCCI (Pleckstrin y domain-containing family F member 2 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2MG42_ORCCI)

HSP 1 Score: 73.2 bits (178), Expect = 2.310e-11
Identity = 43/119 (36.13%), Postives = 57/119 (47.90%), Query Frame = 1
Query:    4 QNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRKGWGARHGTPAAIDAIRQRFPGPSSSSTP 360
            Q+  +WVPDS AA C VC  PF  V RRHHCR+CG+ +CG CS     ++ L  NQ         S +P+R C PC   +  +     Q   W     +    D+  +    PS SS P
Sbjct:  144 QHAAVWVPDSEAAACQVCRNPFTFVNRRHHCRKCGSVICGPCS----KNRALLPNQ---------SKKPLRVCNPCHNSVSGKNQDGNQNS-WAGNADSSGEDDSDDEGEENPSWSSAP 248          
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Match: A0A7S3XR58_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR58_HETAK)

HSP 1 Score: 69.7 bits (169), Expect = 1.100e-9
Identity = 29/49 (59.18%), Postives = 33/49 (67.35%), Query Frame = 1
Query:   13 QLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVL 159
            + WVPDSVA  CMVC   F L  RRHHCRRCG C+C  CS + V+D  L
Sbjct:  380 EAWVPDSVAPACMVCGAAFGLFTRRHHCRRCGACVCAGCSASRVTDPAL 428          
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Match: A0A418B4W1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B4W1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.410e-9
Identity = 34/84 (40.48%), Postives = 44/84 (52.38%), Query Frame = 1
Query:   16 LWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHAL 267
            +W+PDSV+  C  C + F L+LRRHHCRRCG  +CG CS                +++  +   PVR C  C RVLD     AL
Sbjct:  350 VWIPDSVSEECSQCRKAFRLLLRRHHCRRCGFVVCGLCSEHR-------------SILFDNDMRPVRVCNKCNRVLDLVKQSAL 420          
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Match: A0A024UQR4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQR4_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.000e-9
Identity = 34/84 (40.48%), Postives = 44/84 (52.38%), Query Frame = 1
Query:   16 LWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHAL 267
            +W+PDSV+  C  C + F L+LRRHHCRRCG  +CG CS                +++  +   PVR C  C RVLD     AL
Sbjct:  422 VWIPDSVSEECSQCRKAFRLLLRRHHCRRCGFVVCGLCSEHR-------------SILFDNDMRPVRVCNKCNRVLDLVKQSAL 492          
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Match: A0A7S0MGZ5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MGZ5_9CRYP)

HSP 1 Score: 66.2 bits (160), Expect = 3.520e-9
Identity = 46/152 (30.26%), Postives = 68/152 (44.74%), Query Frame = 1
Query:   19 WVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQ--QLAHALQRKGWGARHGTPAAIDAIRQRFPGPSSSS---TPFVAAGGAGYAATLPILSAAAKEGYDGGGFVPPL 459
            W PD     C  CS+ FN++ RRHHCR CG  +CG C            N+   ++++    EPVR C  C     Q  +L  A+   G+        A++A+      P+ S+   TPF+ A   G+   + +L    + G D    VPPL
Sbjct:    9 WQPDKSTKTCSTCSKRFNVLQRRHHCRHCGRVICGSCGK----------NKHRVSLLKFGYHEPVRVCVSCHERCTQAEELMAAISGNGF-------VALEALLDAGADPNFSTLVFTPFMHAAAKGHTKLMQLLG---ERGADTAYHVPPL 140          
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Match: A0A3R7B1W5_9STRA (FYVE-type domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7B1W5_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.100e-9
Identity = 34/84 (40.48%), Postives = 44/84 (52.38%), Query Frame = 1
Query:   16 LWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHAL 267
            +W+PDSVA  C  C +PF L+ RRHHCRRCG  +CG CS                +++  +   PVR CT C  VL +    AL
Sbjct:  460 VWIPDSVAEECSQCGKPFRLLWRRHHCRRCGFVVCGHCSEHR-------------SILFDNDPRPVRVCTTCHNVLTKVKECAL 530          
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Match: A0A6A5ASZ2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ASZ2_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.260e-9
Identity = 34/84 (40.48%), Postives = 44/84 (52.38%), Query Frame = 1
Query:   16 LWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSDKVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHAL 267
            +W+PDSVA  C  C +PF L+ RRHHCRRCG  +CG CS                +++  +   PVR CT C  VL +    AL
Sbjct:  424 VWIPDSVAEECSQCGKPFRLLWRRHHCRRCGFVVCGHCSEHR-------------SILFDNDPRPVRVCTTCHNVLTKVKECAL 494          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1789.5448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN51_ECTSI1.070e-19094.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YKQ1_9STRA1.060e-2253.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XYB4_9STRA8.340e-1841.18Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1D2MG42_ORCCI2.310e-1136.13Pleckstrin y domain-containing family F member 2 n... [more]
A0A7S3XR58_HETAK1.100e-959.18Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A418B4W1_9STRA2.410e-940.48Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024UQR4_9STRA3.000e-940.48Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A7S0MGZ5_9CRYP3.520e-930.26Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A3R7B1W5_9STRA4.100e-940.48FYVE-type domain-containing protein (Fragment) n=1... [more]
A0A6A5ASZ2_9STRA4.260e-940.48Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1789contigEcto-sp13_S_contig1789:11..2109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score550.1
Seed ortholog evalue6.7e-154
Seed eggNOG ortholog2880.D7FN51
Model size915
KEGG koko:K04679,ko:K18052,ko:K19662
KEGG Pathwayko01521,ko04010,ko04012,ko04014,ko04015,ko04020,ko04062,ko04064,ko04066,ko04070,ko04071,ko04140,ko04144,ko04150,ko04270,ko04310,ko04350,ko04370,ko04510,ko04540,ko04650,ko04658,ko04659,ko04660,ko04662,ko04666,ko04670,ko04713,ko04720,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04730,ko04750,ko04911,ko04912,ko04916,ko04918,ko04919,ko04920,ko04921,ko04925,ko04931,ko04933,ko04960,ko04961,ko04970,ko04971,ko04972,ko04973,ko05031,ko05032,ko05140,ko05143,ko05146,ko05161,ko05162,ko05200,ko05205,ko05206,ko05214,ko05223,ko05225,ko05231,map01521,map04010,map04012,map04014,map04015,map04020,map04062,map04064,map04066,map04070,map04071,map04140,map04144,map04150,map04270,map04310,map04350,map04370,map04510,map04540,map04650,map04658,map04659,map04660,map04662,map04666,map04670,map04713,map04720,map04723,map04724,map04725,map04726,map04727,map04728,map04730,map04750,map04911,map04912,map04916,map04918,map04919,map04920,map04921,map04925,map04931,map04933,map04960,map04961,map04970,map04971,map04972,map04973,map05031,map05032,map05140,map05143,map05146,map05161,map05162,map05200,map05205,map05206,map05214,map05223,map05225,map05231
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005543,GO:0008289,GO:0032266,GO:0035091,GO:0043167,GO:0043168,GO:1901981
Exons3
EggNOG free text desc.1-phosphatidylinositol binding
EggNOG OGsKOG0694@1,KOG0694@2759,KOG1841@1,KOG1841@2759
Ec32 ortholog descriptionFYVE zinc finger
Ec32 orthologEc-06_008410.1
EC2.7.11.13
Cds size915
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462925.838324-CDS-Ecto-sp13_S_contig1789:10..1631681462925.838324-CDS-Ecto-sp13_S_contig1789:10..163Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1789 11..163 +
1681462925.848999-CDS-Ecto-sp13_S_contig1789:630..7471681462925.848999-CDS-Ecto-sp13_S_contig1789:630..747Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1789 631..747 +
1681462925.8578188-CDS-Ecto-sp13_S_contig1789:1464..21091681462925.8578188-CDS-Ecto-sp13_S_contig1789:1464..2109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1789 1465..2109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1789.5448.1prot_Ecto-sp13_S_contig1789.5448.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1789 11..2109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1789.5448.1

>prot_Ecto-sp13_S_contig1789.5448.1 ID=prot_Ecto-sp13_S_contig1789.5448.1|Name=mRNA_Ecto-sp13_S_contig1789.5448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=305bp
VQNNQLWVPDSVAAGCMVCSRPFNLVLRRHHCRRCGTCMCGFCSHTAVSD
KVLSVNQTTGAVIRLSSGEPVRCCTPCTRVLDQQLAHALQRKGWGARHGT
PAAIDAIRQRFPGPSSSSTPFVAAGGAGYAATLPILSAAAKEGYDGGGFV
PPLSTSRSNAEEEEYEGQEKQEGMGGLGGNGYYHGGGDGRGNDSESPIRR
MKHGVEDPLASVQEHSPPPPPRRWQEPQPTAGEVPSWLGKSSLGSSRLPA
ATPKSAVTASAGRAPLPDAEQYYEEGLEEEGGVWGEESAGMEETTDWSNS
GAVV*
back to top

mRNA from alignment at Ecto-sp13_S_contig1789:11..2109+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1789.5448.1 ID=mRNA_Ecto-sp13_S_contig1789.5448.1|Name=mRNA_Ecto-sp13_S_contig1789.5448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2099bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1789:11..2109+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCAAAACAACCAGCTGTGGGTGCCAGACTCGGTGGCCGCGGGTTGCAT GGTCTGTTCCCGCCCGTTCAACCTCGTTCTCCGAAGGCACCACTGCCGTC GGTGCGGGACTTGCATGTGCGGCTTTTGCTCCCACACGGCTGTGAGCGAC AAGGTGCGTTATCGAAGAGTCTACAAGCTTTTCTTTGTGTTTTCTGCATA CGGCATATGACTGCACCTTGTGGTCTCGTTTTGCGATGTCAGTGTGTGAG GCTGTGTTGACACCAGGTTAATCGTGTCCAATTGCACCACATGGGTGTGG TATAGTCTCCGACCAAATTTCGCCATCGGATCCGTTTGCCACGTGACAGA GCCGACTGTTGTTGCTGTTGTTGCTCTGTGGCTGCGTTGTTGTTCGCGCA CAAGTGACGAACATGTAGCAGGAGCGGGCGGAACGACATGGTCTTGCTGA CGACTTGTCATGCATACTGTACATGTACATGGTGGAAGAAAGTGTATTGC GCCGTGTGTTGGCACGGACGTTTCTCTTTACTGCGCACTAATGGCGTTGG GACCCCCCCCTTTTTAGGAATGTCGCTAACCGCTGCTTGTCGTGTCGTCT CGACTTTGTGCCGCACCCAGGTCCTTTCTGTGAACCAGACAACCGGTGCA GTGATACGGTTGTCTTCCGGGGAACCCGTCCGCTGCTGCACCCCATGTAC GCGCGTCCTTGACCAGCAGCTCGCGCATGCTTTGCAGGTCCGTGGGTGCA GGGTATTCGTGGTGGTGTGGTGCGTACTCTTGATTTTTCATGCCATAGTC GTAAGACTGTTGACCTCGCAGTCTACCAACCGGGGACAGAGCACGCCCGA CTTCCACCGGACCCAGGCTGGAACACTTTGCACCAACCCCGTGCGGTGTT CATCGAGTTGATATCGTGTTTCTCTCCCCTTGTGTATGGATGACATCTCT GAATGGGTTGATTTATTTCATGTCTCGCCACTTGCTACGAAACGCTTCGT TTGTGTGCATGTGGAAACTTCATACACGAAGTACAGTCATCCCCATTTGT GCGGGACCAAGGTTCTCCACCCGCTCGTAGTGAGTCATACCAAACGCGCA ACCTCTCCCCGGCAACCTGGTTCTCTGGTTCCATGTAGTGAGTAGCGTGT TTTACGGCGTCATTGCCAATCCGGCGCCAACCCAAAGTGCGGGTGTGTGT GGGTGGGGGGGACCGAGGAAAGTGAAGTCGGCGGATCTCTCGTTGGTACT AAAGTGTTACCTTGCGATATCTACATTCCAGTCGGCGTTTCACAGTGAAC GAGGAGAGACGCCGTTCTTGCTTCTGTCCACTCTTTCAAGTTTTACGGAA TTTCGTGGGTGGCCCATCTTTGTACCGCGGCATTGGCTGGGTTTTTGACC TTCCTCTCCCCCCTCCCGCCCACCCGCATGATATCCCTCATTGACCACCA CCAGCGAAAAGGGTGGGGTGCTAGGCATGGCACGCCGGCCGCCATCGATG CAATTCGCCAGAGGTTTCCGGGCCCGTCTTCATCATCAACTCCTTTCGTC GCCGCCGGAGGGGCAGGCTATGCTGCCACGCTGCCGATATTATCGGCTGC TGCAAAGGAGGGCTACGACGGCGGCGGTTTCGTGCCCCCCCTATCTACAT CCCGCTCGAATGCCGAGGAGGAGGAATACGAGGGGCAGGAGAAGCAGGAA GGCATGGGTGGTTTAGGTGGCAACGGCTACTATCATGGCGGTGGAGATGG GAGAGGTAATGATAGTGAGAGTCCTATCCGCCGTATGAAGCACGGCGTCG AAGACCCACTCGCTAGCGTGCAGGAGCATTCGCCTCCACCCCCGCCGCGT CGATGGCAAGAGCCACAACCAACCGCTGGAGAAGTTCCATCTTGGCTGGG CAAGAGCTCGTTGGGCTCGTCCCGACTCCCGGCGGCAACACCGAAAAGTG CTGTCACTGCGAGCGCCGGCAGGGCGCCGCTGCCCGATGCGGAACAATAC TACGAGGAGGGTCTCGAGGAAGAGGGTGGGGTGTGGGGCGAAGAGAGCGC CGGCATGGAAGAAACGACGGACTGGTCCAACTCCGGGGCTGTGGTGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1789:11..2109+

>mRNA_Ecto-sp13_S_contig1789.5448.1 ID=mRNA_Ecto-sp13_S_contig1789.5448.1|Name=mRNA_Ecto-sp13_S_contig1789.5448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=915bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1789:11..2109+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCAAAACAACCAGCTGTGGGTGCCAGACTCGGTGGCCGCGGGTTGCAT
GGTCTGTTCCCGCCCGTTCAACCTCGTTCTCCGAAGGCACCACTGCCGTC
GGTGCGGGACTTGCATGTGCGGCTTTTGCTCCCACACGGCTGTGAGCGAC
AAGGTCCTTTCTGTGAACCAGACAACCGGTGCAGTGATACGGTTGTCTTC
CGGGGAACCCGTCCGCTGCTGCACCCCATGTACGCGCGTCCTTGACCAGC
AGCTCGCGCATGCTTTGCAGCGAAAAGGGTGGGGTGCTAGGCATGGCACG
CCGGCCGCCATCGATGCAATTCGCCAGAGGTTTCCGGGCCCGTCTTCATC
ATCAACTCCTTTCGTCGCCGCCGGAGGGGCAGGCTATGCTGCCACGCTGC
CGATATTATCGGCTGCTGCAAAGGAGGGCTACGACGGCGGCGGTTTCGTG
CCCCCCCTATCTACATCCCGCTCGAATGCCGAGGAGGAGGAATACGAGGG
GCAGGAGAAGCAGGAAGGCATGGGTGGTTTAGGTGGCAACGGCTACTATC
ATGGCGGTGGAGATGGGAGAGGTAATGATAGTGAGAGTCCTATCCGCCGT
ATGAAGCACGGCGTCGAAGACCCACTCGCTAGCGTGCAGGAGCATTCGCC
TCCACCCCCGCCGCGTCGATGGCAAGAGCCACAACCAACCGCTGGAGAAG
TTCCATCTTGGCTGGGCAAGAGCTCGTTGGGCTCGTCCCGACTCCCGGCG
GCAACACCGAAAAGTGCTGTCACTGCGAGCGCCGGCAGGGCGCCGCTGCC
CGATGCGGAACAATACTACGAGGAGGGTCTCGAGGAAGAGGGTGGGGTGT
GGGGCGAAGAGAGCGCCGGCATGGAAGAAACGACGGACTGGTCCAACTCC
GGGGCTGTGGTGTAA
back to top