mRNA_Ecto-sp13_S_contig17887.5447.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Match: E6ZES5_ECTSI (NADH dehydrogenase subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZES5_ECTSI) HSP 1 Score: 170 bits (430), Expect = 6.150e-48 Identity = 105/145 (72.41%), Postives = 110/145 (75.86%), Query Frame = 1
Query: 1 FLAISILVVLLHGSFLGVTAASLHSYLTPSMVRPTSATLFFKSAISY**SC*ITNFMECYFYS---RTCAKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALSVCLFISSYDFLSIYLSMEFLSLIFYVLDNKKKNSYF 426
FLAISILVVLLHGSFLGV AASLHSYLT SMVR T+A LF + F + T AKFIIFIGL+FCVSVSESYMFSARFRAYEFF FILGIALS+CL ISSYD LSIYLSMEFLSLIFYVL KKNSYF
Sbjct: 19 FLAISILVVLLHGSFLGVIAASLHSYLTSSMVRLTTAILFLSLLLVINNPVESQTLWNAIFIADHLSTWAKFIIFIGLLFCVSVSESYMFSARFRAYEFFVFILGIALSLCLLISSYDLLSIYLSMEFLSLIFYVLAAWKKNSYF 163
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Match: A0A089N305_PETFA (NADH dehydrogenase subunit 2 n=6 Tax=Ectocarpales TaxID=2877 RepID=A0A089N305_PETFA) HSP 1 Score: 169 bits (427), Expect = 1.700e-47 Identity = 102/145 (70.34%), Postives = 110/145 (75.86%), Query Frame = 1
Query: 1 FLAISILVVLLHGSFLGVTAASLHSYLTPSMVRPTSATLFFKSAISY**SC*ITNFMECYF---YSRTCAKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALSVCLFISSYDFLSIYLSMEFLSLIFYVLDNKKKNSYF 426
FLAI+ILVVLLHGSFLGVTAASL+SYLTPSM+R TSA LF + F Y T AKFII +GL+FCVS+SE YMFSARFRAYEFF FILGIALS+CL ISSYD LSIYLSMEFLSLIFYVL KKNSYF
Sbjct: 19 FLAIAILVVLLHGSFLGVTAASLYSYLTPSMIRLTSAILFLSLLLVLNNPVESQTLWNAIFITDYLSTWAKFIILVGLLFCVSISEVYMFSARFRAYEFFVFILGIALSLCLLISSYDLLSIYLSMEFLSLIFYVLACWKKNSYF 163
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Match: A0A1I9LW35_9PHAE (NADH dehydrogenase subunit 2 n=2 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW35_9PHAE) HSP 1 Score: 167 bits (423), Expect = 6.540e-47 Identity = 99/145 (68.28%), Postives = 109/145 (75.17%), Query Frame = 1
Query: 1 FLAISILVVLLHGSFLGVTAASLHSYLTPSMVRPTSATLFFKSAISY**SC*ITNFMECYF---YSRTCAKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALSVCLFISSYDFLSIYLSMEFLSLIFYVLDNKKKNSYF 426
FLA SIL+VLLHGSFLGVTAASL++YLTPSMVR TS TLF + + F Y AKFI+F+GL+FCVSVSESYMF ARFRAYEFF FILGI LS+CL ISSYD LSIYLSMEFLSLIFYVL KK+SYF
Sbjct: 19 FLAFSILIVLLHGSFLGVTAASLYTYLTPSMVRVTSVTLFLALLLVINNPIEVQTLWNALFITDYLSNWAKFIVFVGLLFCVSVSESYMFLARFRAYEFFVFILGIGLSLCLLISSYDLLSIYLSMEFLSLIFYVLAAWKKDSYF 163
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Match: A0A3G5FPS0_9PHAE (NADH dehydrogenase subunit 2 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPS0_9PHAE) HSP 1 Score: 162 bits (409), Expect = 7.320e-45 Identity = 99/145 (68.28%), Postives = 109/145 (75.17%), Query Frame = 1
Query: 1 FLAISILVVLLHGSFLGVTAASLHSYLTPSMVRPTSATLFFKSAISY**SC*ITNFMECYF---YSRTCAKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALSVCLFISSYDFLSIYLSMEFLSLIFYVLDNKKKNSYF 426
FLAISILVVLLHGSFLGVTAASL++YLTPSMVR TS LF + F Y + AK I+ +GLIFCVSVSE+YMFSARFRAYE F FILGIALS+CL ISSYD LSIYLSMEF+SLIFYVL + KKNSYF
Sbjct: 19 FLAISILVVLLHGSFLGVTAASLYTYLTPSMVRLTSLILFLSLLLIVNNPVGSQTLWNAIFITDYIGSWAKSIVVLGLIFCVSVSEAYMFSARFRAYELFVFILGIALSLCLLISSYDLLSIYLSMEFISLIFYVLASWKKNSYF 163
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Match: A0A8F0FC15_9PHAE (NADH dehydrogenase subunit 2 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FC15_9PHAE) HSP 1 Score: 161 bits (408), Expect = 1.080e-44 Identity = 98/145 (67.59%), Postives = 112/145 (77.24%), Query Frame = 1
Query: 1 FLAISILVVLLHGSFLGVTAASLHSYLTPSMVRPTSATLFFKSAI---SY**SC*ITNFMECYFYSRTCAKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALSVCLFISSYDFLSIYLSMEFLSLIFYVLDNKKKNSYF 426
FLA++ILVVLLHGSFLGV+AASL++YLTPSMVR TSA LF + + S + N + Y T AKFI+F+GL+F VSV E YMFSARFRAYEFF FI+GI LS+CL ISSYD LSIYLSMEFLSLIFYVL KKNSYF
Sbjct: 19 FLAVTILVVLLHGSFLGVSAASLYTYLTPSMVRLTSAILFLSLLLVLNNPVESKTLWNALYVTDYVGTWAKFIVFLGLLFSVSVCEPYMFSARFRAYEFFVFIIGIGLSLCLLISSYDLLSIYLSMEFLSLIFYVLATWKKNSYF 163
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Match: Q94Z01_PYLLI (NADH dehydrogenase subunit 2 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94Z01_PYLLI) HSP 1 Score: 160 bits (404), Expect = 3.930e-44 Identity = 97/145 (66.90%), Postives = 108/145 (74.48%), Query Frame = 1
Query: 1 FLAISILVVLLHGSFLGVTAASLHSYLTPSMVRPTSATLFFKSAISY**SC*ITNFMECYF---YSRTCAKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALSVCLFISSYDFLSIYLSMEFLSLIFYVLDNKKKNSYF 426
FLAI+ILV+LLHGSFLGV AASL++YLTP MVR TSA+L + F Y T AK IIF+GL+FCVSVSE+YMFSARFR+YEFF FILGI LS+CL ISSYD LSIYLSMEFLSLIFYVL KKNSYF
Sbjct: 19 FLAIAILVILLHGSFLGVVAASLYTYLTPYMVRLTSASLVLSLLLVINNPVESQTLWNAIFITDYLGTWAKSIIFLGLLFCVSVSEAYMFSARFRSYEFFVFILGIGLSLCLLISSYDLLSIYLSMEFLSLIFYVLATWKKNSYF 163
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Match: F8UWM7_9PHAE (NADH dehydrogenase subunit 2 n=61 Tax=Laminariales TaxID=2886 RepID=F8UWM7_9PHAE) HSP 1 Score: 159 bits (402), Expect = 7.950e-44 Identity = 96/145 (66.21%), Postives = 109/145 (75.17%), Query Frame = 1
Query: 1 FLAISILVVLLHGSFLGVTAASLHSYLTPSMVRPTSATLFFKSAISY**SC*ITNFMECYFYSR---TCAKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALSVCLFISSYDFLSIYLSMEFLSLIFYVLDNKKKNSYF 426
FLAI+ILVVLLHGSFLGV+AASL++YLTPSMVR TS LF + F + T +K I+F+GLIFCV+VSESYMFSARFRAYEFF F++GI LS+CL ISSYD LSIYLSMEFLSLIFYVL KKNSYF
Sbjct: 19 FLAIAILVVLLHGSFLGVSAASLYTYLTPSMVRLTSTILFVSLLLVLNNPVESQTLWNSVFVTDNIGTWSKAIVFLGLIFCVAVSESYMFSARFRAYEFFVFVIGIGLSLCLLISSYDLLSIYLSMEFLSLIFYVLAAWKKNSYF 163
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Match: Q2TUE9_9PHAE (NADH dehydrogenase subunit 2 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUE9_9PHAE) HSP 1 Score: 156 bits (395), Expect = 8.330e-43 Identity = 97/155 (62.58%), Postives = 113/155 (72.90%), Query Frame = 1
Query: 1 FLAISILVVLLHGSFLGVTAASLHSYLTPSMVRPTSATLFFKSAISY**SC*ITNFMECYFYSRTC-------------AKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALSVCLFISSYDFLSIYLSMEFLSLIFYVLDNKKKNSYF 426
FLAIS+LVVLLHGSFLGV+AASL++YLTPS+ R TS LF + I N +E S+T AKFI+F+GL+FCVSVSE+YMFSARFRAYE + FI+GI LS+CL ISSYD LSIYLSMEFLSLIFYVL + KKNSYF
Sbjct: 19 FLAISLLVVLLHGSFLGVSAASLYTYLTPSIARLTSIILFLSLLLV------INNPVE----SQTLWNALFVTDHLAIWAKFIVFLGLLFCVSVSEAYMFSARFRAYEIYVFIIGIGLSLCLLISSYDLLSIYLSMEFLSLIFYVLASWKKNSYF 163
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Match: A0A8F0FCX9_9PHAE (NADH dehydrogenase subunit 2 n=3 Tax=Laminariales TaxID=2886 RepID=A0A8F0FCX9_9PHAE) HSP 1 Score: 153 bits (386), Expect = 1.700e-41 Identity = 94/145 (64.83%), Postives = 107/145 (73.79%), Query Frame = 1
Query: 1 FLAISILVVLLHGSFLGVTAASLHSYLTPSMVRPTSATLFFKSAISY**SC*ITNFMECYFYSR---TCAKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALSVCLFISSYDFLSIYLSMEFLSLIFYVLDNKKKNSYF 426
FLAI+ILV+LLHGSFLGVTAASL++YLTPSM+R TS LF + + F + T +KFIIFIGL+FCVSV E+ MFSARFRAYEFF FI+ I LS+ L ISSYD LSIYLSMEFLSLIFYVL KKNSYF
Sbjct: 19 FLAIAILVLLLHGSFLGVTAASLYTYLTPSMIRLTSTILFLSLLLVLNNAVESQTLWNALFITDQLGTWSKFIIFIGLLFCVSVCEASMFSARFRAYEFFVFIISIGLSLSLLISSYDLLSIYLSMEFLSLIFYVLAAWKKNSYF 163
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Match: A0A8F0K0T6_9PHAE (NADH dehydrogenase subunit 2 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0K0T6_9PHAE) HSP 1 Score: 152 bits (385), Expect = 2.410e-41 Identity = 92/145 (63.45%), Postives = 105/145 (72.41%), Query Frame = 1
Query: 1 FLAISILVVLLHGSFLGVTAASLHSYLTPSMVRPTSATLFFKSAISY**SC*ITNFMECYF---YSRTCAKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALSVCLFISSYDFLSIYLSMEFLSLIFYVLDNKKKNSYF 426
FLAISILV+LLHGSFLG +AASL++YLTPS+VR TS LF + F Y T AKFII +GLIFCVS+ E+YMFS RFRA+EFF F++ I LS+CL ISSYD LSIYLSMEFLSLIFYVL KKNSYF
Sbjct: 19 FLAISILVLLLHGSFLGASAASLYTYLTPSLVRLTSTILFLSIFLVLNNPVEHQTLWNALFVSDYLSTWAKFIILLGLIFCVSICEAYMFSVRFRAFEFFVFLISIGLSLCLLISSYDLLSIYLSMEFLSLIFYVLACWKKNSYF 163 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17887.5447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17887.5447.1 >prot_Ecto-sp13_S_contig17887.5447.1 ID=prot_Ecto-sp13_S_contig17887.5447.1|Name=mRNA_Ecto-sp13_S_contig17887.5447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp MECYFYSRTCAKFIIFIGLIFCVSVSESYMFSARFRAYEFFAFILGIALSback to top mRNA from alignment at Ecto-sp13_S_contig17887:3..428- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17887.5447.1 ID=mRNA_Ecto-sp13_S_contig17887.5447.1|Name=mRNA_Ecto-sp13_S_contig17887.5447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17887:3..428- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17887:3..428- >mRNA_Ecto-sp13_S_contig17887.5447.1 ID=mRNA_Ecto-sp13_S_contig17887.5447.1|Name=mRNA_Ecto-sp13_S_contig17887.5447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17887:3..428- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |