mRNA_Ecto-sp13_S_contig1788.5445.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1788.5445.1
Unique NamemRNA_Ecto-sp13_S_contig1788.5445.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1788.5445.1 vs. uniprot
Match: D7FZH6_ECTSI (WD repeat domain-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH6_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 6.560e-17
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = -3 
Query:    5 MDGDPRDGAVPVDSGSNGLAAGTAAGASPRPDRSEPVSVSPAGFAGLS 148
            MDGDPRDGAVPVDSGSNGLAAGT AGASPRPDRSEP SVSPAGFAGLS
Sbjct:    1 MDGDPRDGAVPVDSGSNGLAAGTVAGASPRPDRSEPGSVSPAGFAGLS 48
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1788.5445.1 vs. uniprot
Match: A0A6H5LKE0_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKE0_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.270e-16
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = -3 
Query:    5 MDGDPRDGAVPVDSGSNGLAAGTAAGASPRPDRSEPVSVSPAGFAGLS 148
            MDGDPRDGA+PVDSGSNGLAAGTAAGASPRPDRS+P SVSPAGF GLS
Sbjct:    1 MDGDPRDGAIPVDSGSNGLAAGTAAGASPRPDRSDPGSVSPAGFVGLS 48
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1788.5445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZH6_ECTSI6.560e-1795.83WD repeat domain-containing protein, putative n=1 ... [more]
A0A6H5LKE0_9PHAE2.270e-1691.67PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1788contigEcto-sp13_S_contig1788:14446..14767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size322
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462925.7219186-CDS-Ecto-sp13_S_contig1788:14445..147661681462925.7219186-CDS-Ecto-sp13_S_contig1788:14445..14766Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1788 14446..14766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1788.5445.1prot_Ecto-sp13_S_contig1788.5445.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1788 14446..14766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1788.5445.1

>prot_Ecto-sp13_S_contig1788.5445.1 ID=prot_Ecto-sp13_S_contig1788.5445.1|Name=mRNA_Ecto-sp13_S_contig1788.5445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
KQTAQRSQRETQRPARFYLVVARRRLLSLPLGHCCRCLLEPPRPWGHRPC
RAVPSFAPLRSAWLLAFRSFRFDTVPSCLPPCRPPASCYLVRLLSPPRGK
RAGVDES
back to top

mRNA from alignment at Ecto-sp13_S_contig1788:14446..14767+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1788.5445.1 ID=mRNA_Ecto-sp13_S_contig1788.5445.1|Name=mRNA_Ecto-sp13_S_contig1788.5445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=322bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1788:14446..14767+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCAGACAGCCCAGCGAAGCCAGCGGGAGACACAGAGACCGGCTCGCTT
CTATCTGGTCGTGGCGAGGCGCCGGCTGCTGTCCCTGCCGCTAGGCCATT
GCTGCCGCTGTCTACTGGAACCGCCCCGTCCCTGGGGTCACCGTCCATGC
CGTGCGGTCCCTTCTTTCGCCCCCCTCCGTTCGGCGTGGCTGCTCGCTTT
TCGCAGTTTTCGCTTCGATACTGTTCCCTCTTGCTTGCCACCGTGTCGAC
CGCCAGCCTCTTGCTACTTGGTCCGCCTACTGTCGCCCCCACGTGGGAAA
CGGGCGGGGGTTGACGAATCCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1788:14446..14767+

>mRNA_Ecto-sp13_S_contig1788.5445.1 ID=mRNA_Ecto-sp13_S_contig1788.5445.1|Name=mRNA_Ecto-sp13_S_contig1788.5445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1788:14446..14767+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCAGACAGCCCAGCGAAGCCAGCGGGAGACACAGAGACCGGCTCGCTT
CTATCTGGTCGTGGCGAGGCGCCGGCTGCTGTCCCTGCCGCTAGGCCATT
GCTGCCGCTGTCTACTGGAACCGCCCCGTCCCTGGGGTCACCGTCCATGC
CGTGCGGTCCCTTCTTTCGCCCCCCTCCGTTCGGCGTGGCTGCTCGCTTT
TCGCAGTTTTCGCTTCGATACTGTTCCCTCTTGCTTGCCACCGTGTCGAC
CGCCAGCCTCTTGCTACTTGGTCCGCCTACTGTCGCCCCCACGTGGGAAA
CGGGCGGGGGTTGACGAATCC
back to top