mRNA_Ecto-sp13_S_contig1788.5442.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1788.5442.1
Unique NamemRNA_Ecto-sp13_S_contig1788.5442.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1788.5442.1 vs. uniprot
Match: A0A6H5LKE0_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKE0_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 6.950e-29
Identity = 72/101 (71.29%), Postives = 74/101 (73.27%), Query Frame = -2 
Query:    6 VSGRRMSGVGARDFGGPSPAAVPKGALSGRRPVQAAEETWGSTGLTLPPATSAVTAAGGGDSS-----------------VHAMGSAPLSSFGASPLAPQE 257
            VSGRRM  VGAR FGGPS AAVPKGA+SGRRPVQA EETW  T LTLPPATS VTAAGGGD S                 VHAMGSAPLSSFGASPLAPQ+
Sbjct: 1090 VSGRRMLDVGARGFGGPSQAAVPKGAMSGRRPVQAGEETWRGTDLTLPPATSTVTAAGGGDGSAHDRERRLSGVSGEASGVHAMGSAPLSSFGASPLAPQD 1190
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1788.5442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LKE0_9PHAE6.950e-2971.29PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1788contigEcto-sp13_S_contig1788:10008..10382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size376
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462925.6188598-CDS-Ecto-sp13_S_contig1788:10007..103821681462925.6188598-CDS-Ecto-sp13_S_contig1788:10007..10382Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1788 10008..10382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1788.5442.1prot_Ecto-sp13_S_contig1788.5442.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1788 10008..10382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1788.5442.1

>prot_Ecto-sp13_S_contig1788.5442.1 ID=prot_Ecto-sp13_S_contig1788.5442.1|Name=mRNA_Ecto-sp13_S_contig1788.5442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
PVSCGANGDAPKEDRGAEPMACTLLSPPPAAVTALVAGGRVRPVLPQVSS
AAWTGRLPLRAPFGTAAGEGPPKSRAPTPDIRLPLTEAAAEAAGATKEEE
NSPTSAAAAACCRLLNSCCCCCSC*
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mRNA from alignment at Ecto-sp13_S_contig1788:10008..10382+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1788.5442.1 ID=mRNA_Ecto-sp13_S_contig1788.5442.1|Name=mRNA_Ecto-sp13_S_contig1788.5442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1788:10008..10382+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGTCTCCTGCGGCGCCAACGGGGACGCCCCGAAAGAAGACAGGGGGGC
TGAACCCATGGCGTGCACGCTACTATCACCACCACCCGCGGCCGTCACCG
CGCTGGTAGCTGGCGGAAGAGTTAGACCGGTGCTACCCCAAGTCTCTTCA
GCCGCCTGGACGGGGCGTCTACCGCTCAGGGCGCCCTTCGGGACCGCAGC
TGGTGAAGGCCCCCCAAAATCTCGGGCGCCTACGCCCGACATCCGTCTAC
CGCTGACGGAGGCGGCCGCGGAGGCGGCGGGCGCGACAAAGGAGGAGGAA
AACTCTCCAACTTCTGCGGCCGCCGCTGCTTGTTGTCGCCTCCTTAACTC
CTGCTGCTGCTGCTGCAGCTGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1788:10008..10382+

>mRNA_Ecto-sp13_S_contig1788.5442.1 ID=mRNA_Ecto-sp13_S_contig1788.5442.1|Name=mRNA_Ecto-sp13_S_contig1788.5442.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1788:10008..10382+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGTCTCCTGCGGCGCCAACGGGGACGCCCCGAAAGAAGACAGGGGGGC
TGAACCCATGGCGTGCACGCTACTATCACCACCACCCGCGGCCGTCACCG
CGCTGGTAGCTGGCGGAAGAGTTAGACCGGTGCTACCCCAAGTCTCTTCA
GCCGCCTGGACGGGGCGTCTACCGCTCAGGGCGCCCTTCGGGACCGCAGC
TGGTGAAGGCCCCCCAAAATCTCGGGCGCCTACGCCCGACATCCGTCTAC
CGCTGACGGAGGCGGCCGCGGAGGCGGCGGGCGCGACAAAGGAGGAGGAA
AACTCTCCAACTTCTGCGGCCGCCGCTGCTTGTTGTCGCCTCCTTAACTC
CTGCTGCTGCTGCTGCAGCTGCTGA
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