mRNA_Ecto-sp13_S_contig1788.5441.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1788.5441.1
Unique NamemRNA_Ecto-sp13_S_contig1788.5441.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1788.5441.1 vs. uniprot
Match: D7FZH6_ECTSI (WD repeat domain-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH6_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 4.960e-19
Identity = 95/168 (56.55%), Postives = 99/168 (58.93%), Query Frame = -2 
Query:  441 GVGSPEDRPGERGSQDDDVVSKPSSPSATTTGRAPAAGDDQGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKYAAKKAFSRKAPARVSRSRGSPPPKPVPSDVDGQGVENAAVVASADKKSRAGKGRASA 944
            G GSPED PGE G QD+D VS+              AG D+GS       XXXXX                                  XXXXXXXXX  XXXXXXXX KYAAKKA SRKAP RV RSRGSPPPKP PSDVD QGVE+AAVVASADKKSRAGKGRASA
Sbjct: 1803 GNGSPEDPPGEAGWQDEDGVSEXXXXXXXXXXXXXXAGGDEGSGSEGKDSXXXXXGPSTARQVRVTRSRLKATTGEPEASATTKPSSSSXXXXXXXXXEDXXXXXXXXXKYAAKKALSRKAPTRVCRSRGSPPPKPAPSDVDEQGVEDAAVVASADKKSRAGKGRASA 1970
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BLAST of mRNA_Ecto-sp13_S_contig1788.5441.1 vs. uniprot
Match: A0A6H5LKE0_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKE0_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 3.530e-16
Identity = 188/278 (67.63%), Postives = 190/278 (68.35%), Query Frame = -2 
Query:  114 QGVGSPEDRPGERGSQDDDVVSKPSSPSATTTGRAPAAGDDQGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKYAAKKAFSRKAPARVSRSRGSPPPKPVPSDVDGQGVENAAVVASADKKSRAGKGRASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEARPLSGDVCDGTAEEQAGVGEKQA 947
            QG GSPEDRPGERGSQDDD VS+PSS SATTT R          XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   XXXXXXXXXXXXXXXXX                    RGSPPPKPVPSDVD QGVE+AAVVASAD KSRAGKGRASA       XXXXXXXXXXXXXX                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EEARP SGDVCDGTAEEQAGVGEKQA
Sbjct: 2414 QGDGSPEDRPGERGSQDDDSVSEPSSLSATTTRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGEPEASATTKPSSSSSAXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXRGSPPPKPVPSDVDEQGVEDAAVVASADMKSRAGKGRASAAGRSASDXXXXXXXXXXXXXXPAGGSARGPAEEALQEAEVGARPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCEEARPSSGDVCDGTAEEQAGVGEKQA 2689
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1788.5441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZH6_ECTSI4.960e-1956.55WD repeat domain-containing protein, putative n=1 ... [more]
A0A6H5LKE0_9PHAE3.530e-1667.63PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1788contigEcto-sp13_S_contig1788:3281..4228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size949
Hectar predicted targeting categoryother localisation
Exons1
Cds size948
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462925.5866725-CDS-Ecto-sp13_S_contig1788:3280..42281681462925.5866725-CDS-Ecto-sp13_S_contig1788:3280..4228Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1788 3281..4228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1788.5441.1prot_Ecto-sp13_S_contig1788.5441.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1788 3281..4228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1788.5441.1

>prot_Ecto-sp13_S_contig1788.5441.1 ID=prot_Ecto-sp13_S_contig1788.5441.1|Name=mRNA_Ecto-sp13_S_contig1788.5441.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=316bp
GGGGGGGVSLAFPPSFVDDAGSPFAAAVSSSSSSFSSPACFSPTPACSSA
VPSHTSPDRGLASSLSSSGEPPPATVPPPAASPAIALLPSSCSSSMSSSL
DAAGGAPTSASSAASSPRPLAPPPAGYSSAASPLASSSSSSLAEPPAALA
RPLPARLFLSADATTAAFSTPCPSTSDGTGFGGGEPRERETLAGAFREKA
FFAAYFSASDASLSESSSSLPEEEAEEDEEGFVVAEASGSPVVAFSLERV
TRTCLAGDAPSSSLSLSLPSLPLPWSSPAAGALPVVVADGEDGFDTTSSS
CEPLSPGRSSGEPTPC
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mRNA from alignment at Ecto-sp13_S_contig1788:3281..4228+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1788.5441.1 ID=mRNA_Ecto-sp13_S_contig1788.5441.1|Name=mRNA_Ecto-sp13_S_contig1788.5441.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=948bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1788:3281..4228+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGCGGCGGCGGCGGCGGAGTCTCCTTGGCCTTCCCGCCCTCCTTCGT
CGACGACGCGGGGTCGCCGTTCGCCGCCGCGGTCTCCTCGTCTTCCTCCT
CGTTCTCCTCCCCCGCCTGCTTCTCCCCAACGCCTGCTTGCTCCTCAGCG
GTTCCGTCGCACACGTCCCCTGATAGAGGCCTGGCTTCCTCATTATCGTC
TTCCGGCGAGCCACCTCCGGCTACTGTTCCACCACCCGCTGCTTCCCCGG
CGATCGCGCTGCTACCCTCTTCCTGCTCTTCGTCGATGTCATCGTCCTTG
GATGCGGCTGGCGGGGCACCCACCTCTGCCTCCTCCGCAGCCTCCTCCCC
GAGGCCCCTTGCGCCGCCGCCGGCGGGATACTCCTCGGCAGCCTCTCCAC
TCGCCTCGTCGTCATCATCGTCGCTTGCGGAACCGCCAGCAGCGCTCGCG
CGACCTTTGCCGGCGCGGCTCTTCTTATCGGCGGATGCGACGACCGCGGC
ATTCTCAACCCCTTGCCCGTCCACGTCGGACGGCACAGGCTTCGGTGGGG
GAGAGCCGCGGGAGCGAGAAACTCTGGCGGGGGCCTTCCGCGAGAAGGCC
TTCTTTGCTGCGTACTTCTCCGCCTCAGACGCCTCGCTCTCGGAGTCCTC
GTCCTCGCTTCCGGAGGAGGAAGCGGAGGAGGACGAGGAGGGCTTCGTAG
TCGCGGAGGCCTCCGGCTCCCCGGTTGTAGCCTTCAGCCTGGAGCGCGTG
ACGCGAACCTGCCTCGCCGGGGACGCTCCGTCGTCGTCGCTATCGCTATC
CTTGCCTTCGCTGCCGCTTCCTTGGTCGTCACCGGCTGCTGGCGCTCTCC
CGGTCGTCGTCGCGGACGGCGAAGACGGTTTCGACACCACGTCGTCGTCT
TGCGAACCCCTCTCGCCGGGCCGGTCCTCGGGCGAGCCGACTCCCTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1788:3281..4228+

>mRNA_Ecto-sp13_S_contig1788.5441.1 ID=mRNA_Ecto-sp13_S_contig1788.5441.1|Name=mRNA_Ecto-sp13_S_contig1788.5441.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=948bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1788:3281..4228+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGCGGCGGCGGCGGCGGAGTCTCCTTGGCCTTCCCGCCCTCCTTCGT
CGACGACGCGGGGTCGCCGTTCGCCGCCGCGGTCTCCTCGTCTTCCTCCT
CGTTCTCCTCCCCCGCCTGCTTCTCCCCAACGCCTGCTTGCTCCTCAGCG
GTTCCGTCGCACACGTCCCCTGATAGAGGCCTGGCTTCCTCATTATCGTC
TTCCGGCGAGCCACCTCCGGCTACTGTTCCACCACCCGCTGCTTCCCCGG
CGATCGCGCTGCTACCCTCTTCCTGCTCTTCGTCGATGTCATCGTCCTTG
GATGCGGCTGGCGGGGCACCCACCTCTGCCTCCTCCGCAGCCTCCTCCCC
GAGGCCCCTTGCGCCGCCGCCGGCGGGATACTCCTCGGCAGCCTCTCCAC
TCGCCTCGTCGTCATCATCGTCGCTTGCGGAACCGCCAGCAGCGCTCGCG
CGACCTTTGCCGGCGCGGCTCTTCTTATCGGCGGATGCGACGACCGCGGC
ATTCTCAACCCCTTGCCCGTCCACGTCGGACGGCACAGGCTTCGGTGGGG
GAGAGCCGCGGGAGCGAGAAACTCTGGCGGGGGCCTTCCGCGAGAAGGCC
TTCTTTGCTGCGTACTTCTCCGCCTCAGACGCCTCGCTCTCGGAGTCCTC
GTCCTCGCTTCCGGAGGAGGAAGCGGAGGAGGACGAGGAGGGCTTCGTAG
TCGCGGAGGCCTCCGGCTCCCCGGTTGTAGCCTTCAGCCTGGAGCGCGTG
ACGCGAACCTGCCTCGCCGGGGACGCTCCGTCGTCGTCGCTATCGCTATC
CTTGCCTTCGCTGCCGCTTCCTTGGTCGTCACCGGCTGCTGGCGCTCTCC
CGGTCGTCGTCGCGGACGGCGAAGACGGTTTCGACACCACGTCGTCGTCT
TGCGAACCCCTCTCGCCGGGCCGGTCCTCGGGCGAGCCGACTCCCTGT
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