mRNA_Ecto-sp13_S_contig1788.5440.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1788.5440.1
Unique NamemRNA_Ecto-sp13_S_contig1788.5440.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1788.5440.1 vs. uniprot
Match: A0A6H5LKE0_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKE0_9PHAE)

HSP 1 Score: 728 bits (1879), Expect = 9.640e-235
Identity = 458/512 (89.45%), Postives = 464/512 (90.62%), Query Frame = -3 
Query:    1 LEYVNRYAKAAPFPGMPAHKEAAPPLELSQESHFWHAWPLGAVGGPHPLLPGDPVANPAEGEGLVACAHLEPVARLLLQLQKSFGGLLFGTQWTSAWGLGGQWPMEVRAAGSVQALGRLAQELVEALPARVFRESWQTPYELKVSRAYKTEVEAAKAAAVAREAAAEAQARRVAAKTARDLANRQLAAEREXXXXXXXXXXXXXXXXXXXXXXGGAADQNQTDTTGAQAGAWMANGVTFDDPSPPGSSVHGRRGSGSGLPPQPGAEPSPRAVGVAAGESSDAPPADADSAEYRSPKKQRRRSSRPSVPPVELVVSPASMSPLRSSRGKRKASMGGGRESFGVXXXXXXXXXXEDGDEEAVMPGDASMKSGLDHSKMSDAEFDRMLADMEADRGSERXXXSGGKAAAQPHSFPPQGYFDTYPKCEWRVRCYSPGVSGGGRAPQRAGIAAVPGRGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXTRRMYPTLTASALAARELSVGETLLRGRRF 1536
            LEYVNRYAKA P P MPAHKEAAPPLELSQESHFWHAWPLGAVG PHPLLPGDPVANPAEGEGLVACAHLEPVARLLLQLQKSFGGLLFGTQWTSAWGLGGQWPMEVRAAGSVQALGRLAQELVEALPARVFRESWQTPYELKVSRAYKTEVEA                       AR+LANRQLAAER XXXXXXXXXXXXXXXXXXX   GG AD+NQTDTTGAQAGAWMANGVTFDDPSPPGSSVHGRRGSGSGLPPQPG EPSP AV  AAG SS APPADADS  YRSPKKQRRRSSRPSVPPVELVVSPASMSPLRSSRGKRKASMGGGRESFGVXXXXXXXXXX DGDE+  MPGDASMKSGLDHSKMSDAEFDRMLADMEADRGSERXXXSGGKAAAQPHSFPPQGYFDTYPKCEWRVRCYSPGVSGGG+APQR G+AAVPGR GAAXXXXXXXXXXXXXXXXXXXXXXXXXXTRR+YP LTASA AAREL VGETLLRGRRF
Sbjct: 2894 LEYVNRYAKAVPCPDMPAHKEAAPPLELSQESHFWHAWPLGAVGVPHPLLPGDPVANPAEGEGLVACAHLEPVARLLLQLQKSFGGLLFGTQWTSAWGLGGQWPMEVRAAGSVQALGRLAQELVEALPARVFRESWQTPYELKVSRAYKTEVEAXXXXXXXXXXXXXXXXXXXXXXAARELANRQLAAERXXXXXXXXXXXXXXXXXXXXE--GGTADRNQTDTTGAQAGAWMANGVTFDDPSPPGSSVHGRRGSGSGLPPQPGGEPSPTAVEAAAGGSSGAPPADADS--YRSPKKQRRRSSRPSVPPVELVVSPASMSPLRSSRGKRKASMGGGRESFGVXXXXXXXXXXXDGDEDTAMPGDASMKSGLDHSKMSDAEFDRMLADMEADRGSERXXXSGGKAAAQPHSFPPQGYFDTYPKCEWRVRCYSPGVSGGGQAPQRVGLAAVPGRAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXTRRLYPALTASARAARELGVGETLLRGRRF 3401
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1788.5440.1 vs. uniprot
Match: D7FZH6_ECTSI (WD repeat domain-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH6_ECTSI)

HSP 1 Score: 538 bits (1386), Expect = 1.830e-168
Identity = 317/370 (85.68%), Postives = 321/370 (86.76%), Query Frame = -3 
Query:  430 LEYVNRYAKAAPFPGMPAHKEAAPPLELSQESHFWHAWPLGAVGGPHPLLPGDPVANPAEGEGLVACAHLEPVARLLLQLQKSFGGLLFGTQWTSAWGLGGQWPMEVRAAGSVQALGRLAQELVEALPARVFRESWQTPYELKVSRAYKTEVEAAKAAAVAREAAAEAQARRVAAKTARDLANRQLAA-EREXXXXXXXXXXXXXXXXXXXXXXGGAADQNQTDTTGAQAGAWMANGVTFDDPSPPGSSVHGRRGSGSGLPPQPGAEPSPRAVGVAAGESSDAPPADADSAEYRSPKKQRRRSSRPSVPPVELVVSPASMSPLRSSRGKRKASMGGGRESFGVXXXXXXXXXXEDGDEEAVMPGDASMKS 1536
            LEYVNRYAKA P PGMPAHKEAAPPLELSQESHFWHAWPLGAVG PHPLLPGDPVANPAEGEGLVACAHLEPVARLLLQL+KSFGGLLFGTQWTSAWGLGGQWPMEVRAAGSVQALGRLAQELVEALPARVFRESWQTPYELKVSRAYKTEVEAAKAA  AREAAAEA                     ERE       XXXXXXXXXXXXX  GGAAD+NQTDTTGAQAG WMANGVTFDDPSPPGSSV GRRGSGSGLPPQP AEPSP A   AAG SS APPADADSAEYRSPKKQRRRSSRPSVPPVELVVSPASMSPLRSSRGKRKASMGGGRESFGV    XXXXXX DGDE+AV+PGDASMKS
Sbjct: 2077 LEYVNRYAKAVPCPGMPAHKEAAPPLELSQESHFWHAWPLGAVGVPHPLLPGDPVANPAEGEGLVACAHLEPVARLLLQLEKSFGGLLFGTQWTSAWGLGGQWPMEVRAAGSVQALGRLAQELVEALPARVFRESWQTPYELKVSRAYKTEVEAAKAAKAAREAAAEAXXXXXXXXXXXXXXXXXXXXXEREGAAAVKAXXXXXXXXXXXXXEEGGAADRNQTDTTGAQAGTWMANGVTFDDPSPPGSSVPGRRGSGSGLPPQPSAEPSPTAAEAAAGGSSGAPPADADSAEYRSPKKQRRRSSRPSVPPVELVVSPASMSPLRSSRGKRKASMGGGRESFGVGTGGXXXXXXXDGDEDAVVPGDASMKS 2446
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1788.5440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LKE0_9PHAE9.640e-23589.45PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D7FZH6_ECTSI1.830e-16885.68WD repeat domain-containing protein, putative n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1788contigEcto-sp13_S_contig1788:527..2064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1538
Hectar predicted targeting categoryother localisation
Exons1
Cds size1242
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462925.5385861-CDS-Ecto-sp13_S_contig1788:526..17681681462925.5385861-CDS-Ecto-sp13_S_contig1788:526..1768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1788 527..1768 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462925.549333-UTR-Ecto-sp13_S_contig1788:1768..20641681462925.549333-UTR-Ecto-sp13_S_contig1788:1768..2064Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1788 1769..2064 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1788.5440.1prot_Ecto-sp13_S_contig1788.5440.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1788 527..1768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1788.5440.1

>prot_Ecto-sp13_S_contig1788.5440.1 ID=prot_Ecto-sp13_S_contig1788.5440.1|Name=mRNA_Ecto-sp13_S_contig1788.5440.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=414bp
EPTAAEESLPDAQLPGRQGRGRQGWVHPPCSPALFGRRREGSGWRKSHRR
RGCRRRRRPPASRNRRYPCPLRSSPTTGDAGGVTPHPPLALRVGVEVPLG
GERVRLRRGLAAAPAAPLAAPVRLHVGEHPVELRVRHLAVVQPRLHAGIA
GHDRFLVPVLAGAGAPAACAHAERLPSPAHGRLALAAAAPQRGHRSGRDD
QFHRRNGRPARTPPLLLRGTVLRAVGIGRGRVRRLTRRHPYCPGRRLRAR
LRRQPRPAAAPPVDTRSRRRGVIKRHPVRHPRPSLGACCIGLILVRCPSL
LPRRSFGGGSGGGSSLCRRRFLPLRRELPVREVSRRLRRYPPRLRLRGRL
PRHRRRLRCLDLGLVRPRHLQLVRRLPRLSEHPRRERLHELLRQPAERLH
APGRPDLHRPLPA*
back to top

mRNA from alignment at Ecto-sp13_S_contig1788:527..2064+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1788.5440.1 ID=mRNA_Ecto-sp13_S_contig1788.5440.1|Name=mRNA_Ecto-sp13_S_contig1788.5440.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1538bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1788:527..2064+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAACCGACGGCCGCGGAGGAGAGTCTCCCCGACGCTCAGCTCCCTGGCCG
CCAGGGCCGAGGCCGTCAGGGTTGGGTACATCCGCCGTGTTCGCCGGCGC
TGTTTGGAAGAAGAAGGGAAGGGAGCGGGTGGAGGAAGAGCCACCGCCGC
CGAGGCTGCCGCCGCCGCCGCCGCCCCCCCGCGTCCCGGAACCGCCGCTA
TCCCTGCCCTTTGCGGAGCTCGCCCACCACCGGAGACGCCGGGGGAGTAA
CACCGCACCCGCCACTCGCACTTCGGGTAGGTGTCGAAGTACCCCTGGGG
GGGGAAAGAGTGCGGCTGCGCCGCGGCCTTGCCGCCGCTCCCGCCGCCCC
TCTCGCTGCCCCTGTCCGCCTCCATGTCGGCGAGCATCCGGTCGAACTCC
GCGTCCGACATCTTGCTGTGGTCCAGCCCCGACTTCATGCTGGCATCGCC
GGGCATGACCGCTTCCTCGTCCCCGTCCTCGCCGGCGCCGGCGCCCCCGC
CGCCTGCGCCCACGCCGAACGACTCCCTTCCCCCGCCCATGGACGCCTTG
CGCTTGCCGCGGCTGCTCCTCAGCGGGGACATCGAAGCGGGCGAGACGAC
CAGTTCCACCGGCGGAACGGACGGCCGGCTCGAACGCCGCCGTTGCTTCT
TCGGGGAACGGTACTCCGCGCTGTCGGCATCGGCCGGGGGCGCGTCAGAC
GACTCACCCGCCGCCACCCCTACTGCCCTGGGAGACGGCTCCGCGCCCGG
CTGCGGCGGCAGCCCCGACCCGCTGCCGCGCCGCCCGTGGACACTCGATC
CCGGCGGCGAGGGGTCATCAAACGTCACCCCGTTCGCCATCCACGCCCCA
GCCTGGGCGCCTGTTGTATCGGTCTGATTTTGGTCCGCTGCCCCTCCCTC
CTCCCTCGCCGTAGCTTCGGTGGCGGCAGCGGCGGCGGCAGCAGCCTTTG
CCGCCGCCGCTTCCTCCCGCTCCGCCGCGAGCTGCCGGTTCGCGAGGTCT
CTCGCCGTCTTCGCCGCTACCCTCCTCGCCTGCGCCTCCGCGGCCGCCTC
CCTCGCCACCGCCGCCGCCTTCGCTGCCTCGACCTCGGTCTTGTACGCCC
GCGACACCTTCAACTCGTACGGCGTCTGCCACGACTCTCGGAACACCCGC
GCCGGGAGCGCCTCCACGAGCTCCTGCGCCAGCCGGCCGAGCGCCTGCAC
GCTCCCGGCCGCCCGGACCTCCATCGGCCACTGCCCGCCTAGGCCCCAAG
CGCTGGTCCACTGGGTACCGAACAGCAGCCCGCCGAACGACTTCTGAAGC
TGGAGGAGAAGCCTGGCGACGGGCTCCAGGTGAGCGCAGGCTACGAGGCC
TTCCCCCTCCGCGGGGTTAGCGACCGGGTCTCCTGGCAGGAGCGGGTGTG
GCCCGCCCACCGCTCCGAGGGGCCACGCGTGCCAGAAGTGAGACTCCTGG
GAGAGCTCCAGCGGCGGGGCCGCCTCCTTGTGGGCCGGCATGCCCGGGAA
CGGTGCGGCCTTCGCGTACCGGTTAACGTACTCCAGCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1788:527..2064+

>mRNA_Ecto-sp13_S_contig1788.5440.1 ID=mRNA_Ecto-sp13_S_contig1788.5440.1|Name=mRNA_Ecto-sp13_S_contig1788.5440.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1242bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1788:527..2064+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAACCGACGGCCGCGGAGGAGAGTCTCCCCGACGCTCAGCTCCCTGGCCG
CCAGGGCCGAGGCCGTCAGGGTTGGGTACATCCGCCGTGTTCGCCGGCGC
TGTTTGGAAGAAGAAGGGAAGGGAGCGGGTGGAGGAAGAGCCACCGCCGC
CGAGGCTGCCGCCGCCGCCGCCGCCCCCCCGCGTCCCGGAACCGCCGCTA
TCCCTGCCCTTTGCGGAGCTCGCCCACCACCGGAGACGCCGGGGGAGTAA
CACCGCACCCGCCACTCGCACTTCGGGTAGGTGTCGAAGTACCCCTGGGG
GGGGAAAGAGTGCGGCTGCGCCGCGGCCTTGCCGCCGCTCCCGCCGCCCC
TCTCGCTGCCCCTGTCCGCCTCCATGTCGGCGAGCATCCGGTCGAACTCC
GCGTCCGACATCTTGCTGTGGTCCAGCCCCGACTTCATGCTGGCATCGCC
GGGCATGACCGCTTCCTCGTCCCCGTCCTCGCCGGCGCCGGCGCCCCCGC
CGCCTGCGCCCACGCCGAACGACTCCCTTCCCCCGCCCATGGACGCCTTG
CGCTTGCCGCGGCTGCTCCTCAGCGGGGACATCGAAGCGGGCGAGACGAC
CAGTTCCACCGGCGGAACGGACGGCCGGCTCGAACGCCGCCGTTGCTTCT
TCGGGGAACGGTACTCCGCGCTGTCGGCATCGGCCGGGGGCGCGTCAGAC
GACTCACCCGCCGCCACCCCTACTGCCCTGGGAGACGGCTCCGCGCCCGG
CTGCGGCGGCAGCCCCGACCCGCTGCCGCGCCGCCCGTGGACACTCGATC
CCGGCGGCGAGGGGTCATCAAACGTCACCCCGTTCGCCATCCACGCCCCA
GCCTGGGCGCCTGTTGTATCGGTCTGATTTTGGTCCGCTGCCCCTCCCTC
CTCCCTCGCCGTAGCTTCGGTGGCGGCAGCGGCGGCGGCAGCAGCCTTTG
CCGCCGCCGCTTCCTCCCGCTCCGCCGCGAGCTGCCGGTTCGCGAGGTCT
CTCGCCGTCTTCGCCGCTACCCTCCTCGCCTGCGCCTCCGCGGCCGCCTC
CCTCGCCACCGCCGCCGCCTTCGCTGCCTCGACCTCGGTCTTGTACGCCC
GCGACACCTTCAACTCGTACGGCGTCTGCCACGACTCTCGGAACACCCGC
GCCGGGAGCGCCTCCACGAGCTCCTGCGCCAGCCGGCCGAGCGCCTGCAC
GCTCCCGGCCGCCCGGACCTCCATCGGCCACTGCCCGCCTAG
back to top