prot_Ecto-sp13_S_contig1787.5439.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1787.5439.1
Unique Nameprot_Ecto-sp13_S_contig1787.5439.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length837
Homology
BLAST of mRNA_Ecto-sp13_S_contig1787.5439.1 vs. uniprot
Match: A0A6H5KYV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYV0_9PHAE)

HSP 1 Score: 937 bits (2421), Expect = 0.000e+0
Identity = 559/614 (91.04%), Postives = 569/614 (92.67%), Query Frame = 0
Query:  196 EDENSLEEIQASIEELLGMQGLGSGSWNNEPGGGVPAAVEREQRTLVREIKALGRRGRWGDVLEVVARARYQGTQLNSIIYGCAINAVGRSGRYKECMILLDWSIEDIEPDEYCYKAAIIACSAANQWGHALDLFRRFQRATDGTGGASPPAAAGAAGDKAEGIAPGTAIYNAVITACARGLFTEEALAFILEMGERGVRRDEGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAMRGNNAQDDDHDLTQILLLLGEERPDTSPSSPPASAEERQEPL----EPL------GSPDGVEFRVAAPFSSLFSPPAPDVRSYNSCIAACRRGGQSGLAKLFFHDMLSRGLRPDVWTFKSAVLDRLQAQPPTXXXXXXXXXXXXTKAGIRQDQEISSRPDFSGGQERLPPSRAPQQARSPWRALLVLLEEVDGEGLGPDTPCINLALTECARAGRWEESRNLLEDLREASPPGGSLRPSVSRYNSVLRTLRNAPARDRRTTFGAPATPPLGGEITPAGGDDSRVDGDSVYLEAAGGRWSGAEGWAEGHVFGFLEDMRAAGVTPDRDTYQCAIRCATDAALLDIAKAEKAA 799
            EDENSLEEIQASIEELLGMQGLGSGSWNNEPGGGVPAAVEREQRTLVREIKALGRRGRWGDVLEVVARARYQGT+LNSIIYGCA+NAVGRSGRYKECMILLDWS EDIEPDEYCYKAAIIACSAANQWG ALDLFRRFQRATDG GGASPPAAAGAAGDKA+G+ PGTAIYNAVITACARGLFTEEALAF LEMG+RG+RRDEGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAMRGNNAQDDDHDL QILLLLGEE PDT        AEERQEPL     P       GSPD VEFRVA P SSL SPPAPDVRSYNSCIAACRRGGQSGLAKLFFHDMLSRGLRPDVWTFKSAVLDRLQAQPPTXXXXXXXXXX  TKAG R+DQE+SSRPDFSGGQERLPPSRAPQQARSPWRALLVLLEEVDGEGLGPD PCINLALTECARAGRWEESRNLLEDLREASPPGGSLRP VSRYNSVLRTLRNAPAR  RTTFGAP TPPLGGE+TPAGGD  RVDGD V LEAAGGRWSGAEGW +GHV GFLEDMRAAGVTPDRDTYQCAIRCATDAALLDIAKAEKAA
Sbjct:  150 EDENSLEEIQASIEELLGMQGLGSGSWNNEPGGGVPAAVEREQRTLVREIKALGRRGRWGDVLEVVARARYQGTELNSIIYGCAMNAVGRSGRYKECMILLDWSTEDIEPDEYCYKAAIIACSAANQWGRALDLFRRFQRATDGVGGASPPAAAGAAGDKAKGVTPGTAIYNAVITACARGLFTEEALAFFLEMGDRGIRRDEGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAMRGNNAQDDDHDLVQILLLLGEELPDTPXXXXXXXAEERQEPLASNHSPTTATAKGGSPDDVEFRVAVPSSSLSSPPAPDVRSYNSCIAACRRGGQSGLAKLFFHDMLSRGLRPDVWTFKSAVLDRLQAQPPTXXXXXXXXXX--TKAGTRRDQEVSSRPDFSGGQERLPPSRAPQQARSPWRALLVLLEEVDGEGLGPDPPCINLALTECARAGRWEESRNLLEDLREASPPGGSLRPGVSRYNSVLRTLRNAPARKCRTTFGAPTTPPLGGEVTPAGGDGIRVDGDFVDLEAAGGRWSGAEGWVQGHVSGFLEDMRAAGVTPDRDTYQCAIRCATDAALLDIAKAEKAA 761          
BLAST of mRNA_Ecto-sp13_S_contig1787.5439.1 vs. uniprot
Match: D8LDQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ5_ECTSI)

HSP 1 Score: 927 bits (2395), Expect = 0.000e+0
Identity = 565/656 (86.13%), Postives = 586/656 (89.33%), Query Frame = 0
Query:  191 SSKGGEDENSLEEIQASIEELLGMQGLGSGSWNNEPGGGVPAAVEREQRTLVREIKALGRRGRWGDVLEVVARARYQGTQLNSIIYGCAINAVGRSGRYKECMILLDWSIEDIEPDEYCYKAAIIACSAANQWGHALDLFRRFQRATDGTGGASPPAAAGAAGDKAEGIAPGTAIYNAVITACARGLFTEEALAFILEMGERGVRRDEGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAMRGNNAQ-DDDHDLTQILLLLGEERPDTSPSSPPASAEERQEPL----EPL------GSPDGVEFRVAAPFSSLFSPPAPDVRSYNSCIAACRRGGQSGLAKLFFHDMLSRGLRPDVWTFKSAVLDRLQAQPPTXXXXXXXXXXXXTKAGIRQDQEISSRPDFSGGQERLPPSRAPQQARSPWRALLVLLEEVDGEGLGPDTPCINLALTECARAGRWEESRNLLEDLREASPPGGSLRPSVSRYNSVLRTLRNAPARDRRTTFGAPATPPLGGEITPAGGDDSRVDGDSVYLEAAGGRWSGAEGWAEGHVFGFLEDMRAAGVTPDRDTYQCAIRCATDAALLDIAKAEKAAEEEEAVGKGGTVARGSDEGALSRGGGGGIVVDVDPM 835
            SS+GGEDENSLEEIQASIEELLGMQGLGSGSWNNEPGGGVPAAVEREQRTLVREIKALGRRGRWGDVLEVVARAR+QGT+LNSIIYGCA+NAVGRSGRYKECMILL+WS EDIEPDEYCYKAAIIACSAANQWG ALDLFRRFQRATDG GGASPPAAAGAAGD A+G APGTAIYNAVITACARGLFTEEALAF LEMGERGVRRDE TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   RGN+AQ DDDHDL +I                       QEPL     P       GSPDGVEFRVAA  SSLFSPP+PDVRSYNSCIAACRRGGQSGLA+LFFHDMLSRGLRPDVWTFK AVL RLQAQPPT XXXXXXXXXX TKAG RQD EISSRP FSGGQERLPPSRAPQQARSPWRALLVLLE+VDGEGLGPD PCINLALTECARAGRWEESR+LLEDLREASPPGGSL P VSRYNSVLRTLRNAPARDRRTT GAP  PPLGGE+TPAGG  SR+D + V LEAAGGRWSGAEGWA+GHV GFLEDMRAAGVTPDRDTYQCAIRCATDAALLDIAKAEKAA EE AVGKGGTVARGSD+GAL+RGGGGG+V+DVDP+
Sbjct:   23 SSRGGEDENSLEEIQASIEELLGMQGLGSGSWNNEPGGGVPAAVEREQRTLVREIKALGRRGRWGDVLEVVARARHQGTELNSIIYGCAMNAVGRSGRYKECMILLEWSTEDIEPDEYCYKAAIIACSAANQWGRALDLFRRFQRATDGIGGASPPAAAGAAGDNAKGFAPGTAIYNAVITACARGLFTEEALAFFLEMGERGVRRDEVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGNDAQEDDDHDLAEIXXXXXXXXXXXXXXXXXXXXXXXQEPLASNHSPTTATAKGGSPDGVEFRVAA-LSSLFSPPSPDVRSYNSCIAACRRGGQSGLARLFFHDMLSRGLRPDVWTFKCAVLGRLQAQPPTPXXXXXXXXXX-TKAGTRQDPEISSRPGFSGGQERLPPSRAPQQARSPWRALLVLLEDVDGEGLGPDPPCINLALTECARAGRWEESRSLLEDLREASPPGGSLLPGVSRYNSVLRTLRNAPARDRRTTLGAPTAPPLGGEVTPAGGGGSRIDEEFVDLEAAGGRWSGAEGWADGHVSGFLEDMRAAGVTPDRDTYQCAIRCATDAALLDIAKAEKAAAEEAAVGKGGTVARGSDKGALNRGGGGGVVMDVDPV 676          
BLAST of mRNA_Ecto-sp13_S_contig1787.5439.1 vs. uniprot
Match: A0A6H5L8D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D4_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.280e-11
Identity = 40/111 (36.04%), Postives = 63/111 (56.76%), Query Frame = 0
Query:  229 GVPAAVEREQRTLVREIKALGRRGRWGDVLEVVARARYQGTQLNSIIYGCAINAVGRSGRYKECMILLDWSIED---IEPDEYCYKAAIIACSAANQWGHALDLFRRFQRA 336
            G  +   RE+  LV  +K +GRR  W   ++V  RAR +G  +++ +Y C I+ V +SGR+ E + LL  + ED   ++P++YCY AA+ AC+    W  AL L    + A
Sbjct:   66 GCESEAARERIELVLRLKDMGRRFEWRGAVKVFRRARARGMVMDNSVYSCIISVVAKSGRWSEAVELLQEAKEDPAGLDPNKYCYTAAVSACARGRNWELALALLDEMREA 176          
BLAST of mRNA_Ecto-sp13_S_contig1787.5439.1 vs. uniprot
Match: A0A835YLF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLF2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.550e-10
Identity = 39/103 (37.86%), Postives = 62/103 (60.19%), Query Frame = 0
Query:  230 VPAAVEREQRTLVREIKALGRRGRWGDVLEVV--ARARYQGTQLNSIIYGCAINAVGRSGRYKECMILLDWSIE-DIEPDEYCYKAAIIACSAANQWGHALDL 329
            + +AV   Q+TL+RE+ ALGR+GRW + L  +  AR       +N+ I+G AI+A+ RS ++++ + +L+   E  + PD  C  AAI AC++A  W  A  L
Sbjct:  155 IDSAVLERQKTLLRELNALGRQGRWSEALARLDAARGAEDPIPMNAYIFGAAISALARSRKWQQALGVLETMREAGVRPDTVCLNAAIAACASAGAWSEARHL 257          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1787.5439.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KYV0_9PHAE0.000e+091.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDQ5_ECTSI0.000e+086.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8D4_9PHAE2.280e-1136.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YLF2_9STRA7.550e-1037.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 388..445
e-value: 4.2E-5
score: 23.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 435..462
e-value: 1.8E-5
score: 22.6
coord: 531..564
e-value: 1.4E-5
score: 22.9
coord: 400..432
e-value: 8.9E-6
score: 23.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 531..560
e-value: 0.017
score: 15.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 648..678
score: 7.333
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 362..396
score: 8.561
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 528..562
score: 10.38
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 306..336
score: 6.84
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 272..302
score: 6.073
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 397..431
score: 11.477
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 237..271
score: 5.831
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 432..466
score: 9.975
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 518..605
e-value: 2.7E-7
score: 32.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 233..342
e-value: 9.1E-14
score: 53.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 355..484
e-value: 2.5E-29
score: 104.6
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 357..570

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1787contigEcto-sp13_S_contig1787:6354..12896 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1787.5439.1mRNA_Ecto-sp13_S_contig1787.5439.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1787 6276..13541 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1787.5439.1 ID=prot_Ecto-sp13_S_contig1787.5439.1|Name=mRNA_Ecto-sp13_S_contig1787.5439.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=837bp
MNLPTSCCNVNVMAFVVQPSFPAVLPASRQPNVRRRRRPSWTTTITTSPP
TGGDAPHGPAASFSSLALLASKQPPPPRQAPQGGRPTNGDEDSPSTATSR
RRYPPRLQPSRENADKNKSGLAESFATPLPPPPPPQPRPPPNTKSTKRPR
IPVPPLQRAFGMGGASSSVNGSAERRGRGGAGAGAGAGGGSSKGGEDENS
LEEIQASIEELLGMQGLGSGSWNNEPGGGVPAAVEREQRTLVREIKALGR
RGRWGDVLEVVARARYQGTQLNSIIYGCAINAVGRSGRYKECMILLDWSI
EDIEPDEYCYKAAIIACSAANQWGHALDLFRRFQRATDGTGGASPPAAAG
AAGDKAEGIAPGTAIYNAVITACARGLFTEEALAFILEMGERGVRRDEGT
YTAAIDACARGGLWRRGLDLLSEMQTAGLRPSLASYNAALDGCGREGRWE
EAADLIDAMRGNNAQDDDHDLTQILLLLGEERPDTSPSSPPASAEERQEP
LEPLGSPDGVEFRVAAPFSSLFSPPAPDVRSYNSCIAACRRGGQSGLAKL
FFHDMLSRGLRPDVWTFKSAVLDRLQAQPPTPPAPAAAAAAAATKAGIRQ
DQEISSRPDFSGGQERLPPSRAPQQARSPWRALLVLLEEVDGEGLGPDTP
CINLALTECARAGRWEESRNLLEDLREASPPGGSLRPSVSRYNSVLRTLR
NAPARDRRTTFGAPATPPLGGEITPAGGDDSRVDGDSVYLEAAGGRWSGA
EGWAEGHVFGFLEDMRAAGVTPDRDTYQCAIRCATDAALLDIAKAEKAAE
EEEAVGKGGTVARGSDEGALSRGGGGGIVVDVDPMR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf