mRNA_Ecto-sp13_S_contig17868.5437.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17868.5437.1
Unique NamemRNA_Ecto-sp13_S_contig17868.5437.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17868.5437.1 vs. uniprot
Match: A0A6H5LI64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI64_9PHAE)

HSP 1 Score: 399 bits (1026), Expect = 1.800e-128
Identity = 197/219 (89.95%), Postives = 205/219 (93.61%), Query Frame = 1 
Query:  169 MAVNGHDCSLTATALLAQVFELADGSDHTPETTNSTLFRKLLRKYFSDEARSLRSSDMIHRACGELWSKLAEMECRPPDGWASIVVTSLFLVTAKDRREELVMHMWRIVAHPAEEKYDNGLGRKLMRQAAVAGGTAEPGQRGLDVALMSLVVETLRRNGCPPEPDSLRSCGSSVARGGTQEENEESLVPSPCGLRLALDVASHTLETCLHHEEGEGRCV 825
            MAVNGHDCS+T TALLAQVFELADGSDHTPETTNS LFRKLLRKYFS EA SLRS DMIH AC EL S+LAEMECRPPDGWASIVVTSLFL+TAKD REELVMHMWR+VAHPAEEKYDNGLGRKLMRQAAVAGGTAEPG R L +ALMSLVV+TLRRNGCPPEPDSLRS GSSVAR GT++ENEESLVPSPCGLRLALDVASHTLETCLHHEEGEGRCV
Sbjct:    1 MAVNGHDCSMTPTALLAQVFELADGSDHTPETTNSALFRKLLRKYFSHEAGSLRSGDMIHLACSELCSRLAEMECRPPDGWASIVVTSLFLLTAKDCREELVMHMWRVVAHPAEEKYDNGLGRKLMRQAAVAGGTAEPGARSLHLALMSLVVDTLRRNGCPPEPDSLRSSGSSVARRGTEKENEESLVPSPCGLRLALDVASHTLETCLHHEEGEGRCV 219
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17868.5437.1 vs. uniprot
Match: D7FX90_ECTSI (SpoU_methylase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX90_ECTSI)

HSP 1 Score: 393 bits (1010), Expect = 1.090e-122
Identity = 197/219 (89.95%), Postives = 203/219 (92.69%), Query Frame = 1 
Query:  169 MAVNGHDCSLTATALLAQVFELADGSDHTPETTNSTLFRKLLRKYFSDEARSLRSSDMIHRACGELWSKLAEMECRPPDGWASIVVTSLFLVTAKDRREELVMHMWRIVAHPAEEKYDNGLGRKLMRQAAVAGGTAEPGQRGLDVALMSLVVETLRRNGCPPEPDSLRSCGSSVARGGTQEENEESLVPSPCGLRLALDVASHTLETCLHHEEGEGRCV 825
            MAVNGHDCS+T TALLAQVFELADGSDHTPETTNSTLFRKLLRKYFSDEA SLRS DMIHRACGELWS+LAEME R PDGWASIVVTSLFL+TAKD  EELVMHMWRIVAHPAEEKYDNG GRKLMRQAAVAGGTAE G R L VALMSLVV+TLRRNGCPPEPDSLRS GSSVARGGT+EENE SLVPSPCGLRLALDVASHTL T LHHE+GEGRCV
Sbjct:    1 MAVNGHDCSMTPTALLAQVFELADGSDHTPETTNSTLFRKLLRKYFSDEAGSLRSGDMIHRACGELWSRLAEMEGRAPDGWASIVVTSLFLLTAKDCTEELVMHMWRIVAHPAEEKYDNGPGRKLMRQAAVAGGTAEHGARSLHVALMSLVVDTLRRNGCPPEPDSLRSSGSSVARGGTEEENEGSLVPSPCGLRLALDVASHTLGTFLHHEDGEGRCV 219
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17868.5437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LI64_9PHAE1.800e-12889.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX90_ECTSI1.090e-12289.95SpoU_methylase domain-containing protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17868contigEcto-sp13_S_contig17868:870..1694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score394.0
Seed ortholog evalue5.6e-107
Seed eggNOG ortholog2880.D7FX90
Preferred nameTARBP1
Model size825
KEGG koko:K15333
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000451,GO:0000453,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008171,GO:0008173,GO:0008175,GO:0008649,GO:0008757,GO:0009451,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016072,GO:0016423,GO:0016435,GO:0016740,GO:0016741,GO:0019219,GO:0019222,GO:0022613,GO:0030488,GO:0031167,GO:0031323,GO:0031326,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070039,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0140098,GO:0140101,GO:0140102,GO:1901360,GO:1901363,GO:1903506,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.enzyme-directed rRNA 2'-O-methylation
EggNOG OGsCOG0566@1,KOG0839@2759
EC2.1.1.34
Cds size825
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462925.30841-CDS-Ecto-sp13_S_contig17868:869..16941681462925.30841-CDS-Ecto-sp13_S_contig17868:869..1694Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17868 870..1694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17868.5437.1prot_Ecto-sp13_S_contig17868.5437.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17868 870..1694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17868.5437.1

>prot_Ecto-sp13_S_contig17868.5437.1 ID=prot_Ecto-sp13_S_contig17868.5437.1|Name=mRNA_Ecto-sp13_S_contig17868.5437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp
DRASLHTAVSSRGDGTVHQDHLSLVAHVACLPVGLSACRSVCLSACLANL
PCPKENMAVNGHDCSLTATALLAQVFELADGSDHTPETTNSTLFRKLLRK
YFSDEARSLRSSDMIHRACGELWSKLAEMECRPPDGWASIVVTSLFLVTA
KDRREELVMHMWRIVAHPAEEKYDNGLGRKLMRQAAVAGGTAEPGQRGLD
VALMSLVVETLRRNGCPPEPDSLRSCGSSVARGGTQEENEESLVPSPCGL
RLALDVASHTLETCLHHEEGEGRCV
back to top

mRNA from alignment at Ecto-sp13_S_contig17868:870..1694+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17868.5437.1 ID=mRNA_Ecto-sp13_S_contig17868.5437.1|Name=mRNA_Ecto-sp13_S_contig17868.5437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17868:870..1694+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACAGAGCATCGTTGCACACAGCAGTAAGCAGCAGGGGTGACGGTACGGT
ACATCAAGATCACCTGAGTCTTGTAGCACACGTTGCCTGCCTACCTGTCG
GCCTGTCGGCCTGTCGGTCTGTCTGCCTGTCTGCCTGTCTCGCCAATCTT
CCGTGTCCAAAAGAGAATATGGCAGTCAACGGACATGATTGTTCATTGAC
AGCAACAGCACTTCTGGCACAAGTGTTCGAGCTGGCTGATGGTTCGGATC
ACACCCCTGAGACAACCAATAGCACCCTGTTTCGAAAATTGCTGCGGAAG
TACTTCAGCGATGAAGCCAGGAGTCTCCGCAGCAGCGACATGATCCACCG
GGCGTGCGGCGAGCTCTGGAGCAAACTTGCCGAGATGGAGTGCCGCCCTC
CGGACGGCTGGGCGAGCATCGTGGTGACGAGCCTCTTCCTCGTCACCGCA
AAGGACCGCAGAGAGGAGCTAGTGATGCACATGTGGCGAATCGTTGCGCA
CCCGGCAGAAGAAAAGTACGACAACGGACTCGGACGAAAACTTATGAGGC
AAGCTGCGGTGGCTGGCGGAACGGCAGAGCCTGGGCAACGGGGCCTAGAT
GTAGCTCTCATGAGCCTTGTTGTCGAAACCCTCCGGCGTAACGGATGCCC
CCCGGAACCCGATTCGTTGCGATCATGCGGCAGCAGCGTGGCGCGCGGAG
GAACGCAAGAAGAGAACGAGGAATCCCTTGTCCCCTCGCCGTGCGGGCTA
CGACTGGCGCTTGACGTAGCGTCGCATACCCTCGAAACGTGTCTCCACCA
CGAGGAGGGCGAGGGAAGATGTGTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17868:870..1694+

>mRNA_Ecto-sp13_S_contig17868.5437.1 ID=mRNA_Ecto-sp13_S_contig17868.5437.1|Name=mRNA_Ecto-sp13_S_contig17868.5437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17868:870..1694+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACAGAGCATCGTTGCACACAGCAGTAAGCAGCAGGGGTGACGGTACGGT
ACATCAAGATCACCTGAGTCTTGTAGCACACGTTGCCTGCCTACCTGTCG
GCCTGTCGGCCTGTCGGTCTGTCTGCCTGTCTGCCTGTCTCGCCAATCTT
CCGTGTCCAAAAGAGAATATGGCAGTCAACGGACATGATTGTTCATTGAC
AGCAACAGCACTTCTGGCACAAGTGTTCGAGCTGGCTGATGGTTCGGATC
ACACCCCTGAGACAACCAATAGCACCCTGTTTCGAAAATTGCTGCGGAAG
TACTTCAGCGATGAAGCCAGGAGTCTCCGCAGCAGCGACATGATCCACCG
GGCGTGCGGCGAGCTCTGGAGCAAACTTGCCGAGATGGAGTGCCGCCCTC
CGGACGGCTGGGCGAGCATCGTGGTGACGAGCCTCTTCCTCGTCACCGCA
AAGGACCGCAGAGAGGAGCTAGTGATGCACATGTGGCGAATCGTTGCGCA
CCCGGCAGAAGAAAAGTACGACAACGGACTCGGACGAAAACTTATGAGGC
AAGCTGCGGTGGCTGGCGGAACGGCAGAGCCTGGGCAACGGGGCCTAGAT
GTAGCTCTCATGAGCCTTGTTGTCGAAACCCTCCGGCGTAACGGATGCCC
CCCGGAACCCGATTCGTTGCGATCATGCGGCAGCAGCGTGGCGCGCGGAG
GAACGCAAGAAGAGAACGAGGAATCCCTTGTCCCCTCGCCGTGCGGGCTA
CGACTGGCGCTTGACGTAGCGTCGCATACCCTCGAAACGTGTCTCCACCA
CGAGGAGGGCGAGGGAAGATGTGTC
back to top