mRNA_Ecto-sp13_S_contig17866.5436.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17866.5436.1
Unique NamemRNA_Ecto-sp13_S_contig17866.5436.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17866.5436.1 vs. uniprot
Match: D8LK16_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK16_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 2.100e-49
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 1
Query:    1 KRLWTGVKAWKELTETWLLTPFTEIDASTLEKHVTLYQRTCHQAVKGLPSNPVAKRLKDDVDNFSPVLPVVVNLRNQGLQGRHWD 255
            KRLWTGVKAWKELTETWLLTPFTEIDAS LEKHVTLYQRTCHQAVKGLPSNPVAKRLKDDVD FSPVLPVVVNLRNQGLQGRHWD
Sbjct: 1008 KRLWTGVKAWKELTETWLLTPFTEIDASILEKHVTLYQRTCHQAVKGLPSNPVAKRLKDDVDTFSPVLPVVVNLRNQGLQGRHWD 1092          
BLAST of mRNA_Ecto-sp13_S_contig17866.5436.1 vs. uniprot
Match: A0A6H5KZG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG2_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 1.190e-47
Identity = 84/93 (90.32%), Postives = 84/93 (90.32%), Query Frame = 1
Query:    1 KRLWTGVKAWKELTETWLLTPFTEIDASTLEKHVTLYQRTCHQAVKGLPSNPVAKRLK--------DDVDNFSPVLPVVVNLRNQGLQGRHWD 255
            KRLWTGVKAWKELTETWLLTPFTEIDAS LEKHVTLYQRTCHQAVKGLPSNPVAKRLK        DDVDNFSPVLPVVVNLRNQGLQGRHWD
Sbjct: 1135 KRLWTGVKAWKELTETWLLTPFTEIDASILEKHVTLYQRTCHQAVKGLPSNPVAKRLKASSLLSFMDDVDNFSPVLPVVVNLRNQGLQGRHWD 1227          
BLAST of mRNA_Ecto-sp13_S_contig17866.5436.1 vs. uniprot
Match: A0A835ZBK4_9STRA (Dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBK4_9STRA)

HSP 1 Score: 120 bits (302), Expect = 5.610e-30
Identity = 54/83 (65.06%), Postives = 65/83 (78.31%), Query Frame = 1
Query:    4 RLWTGVKAWKELTETWLLTPFTEIDASTLEKHVTLYQRTCHQAVKGLPSNPVAKRLKDDVDNFSPVLPVVVNLRNQGLQGRHW 252
            +LW GVK W +LT  WL TPF ++DA+ LEK+VT+Y RTC QA KGLP NPVAK+LK DV+ F+P LPVVVNLRN  L+ RHW
Sbjct:  899 KLWEGVKEWGQLTAVWLTTPFKKVDAAALEKYVTMYLRTCSQAAKGLPGNPVAKQLKGDVETFAPALPVVVNLRNDFLKERHW 981          
BLAST of mRNA_Ecto-sp13_S_contig17866.5436.1 vs. uniprot
Match: F0Y0N3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0N3_AURAN)

HSP 1 Score: 111 bits (277), Expect = 1.340e-26
Identity = 52/83 (62.65%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    4 RLWTGVKAWKELTETWLLTPFTEIDASTLEKHVTLYQRTCHQAVKGLPSNPVAKRLKDDVDNFSPVLPVVVNLRNQGLQGRHW 252
            RLW GVK W  LT  W++TP +EIDA  LEKHV  Y +T  QA KGLP NPV  +LK  V+ F+PVLPVVVNLRN  LQ RHW
Sbjct:  854 RLWRGVKEWSGLTAEWVVTPLSEIDAVELEKHVQAYNKTVFQASKGLPGNPVVPKLKASVETFTPVLPVVVNLRNDALQERHW 936          
BLAST of mRNA_Ecto-sp13_S_contig17866.5436.1 vs. uniprot
Match: A0A8J2SJ49_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJ49_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.180e-25
Identity = 48/84 (57.14%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    4 RLWTGVKAWKELTETWLLTPFTEIDASTLEKHVTLYQRTCHQAVKGLPSNPVAKRLKDDVDNFSPVLPVVVNLRNQGLQGRHWD 255
            +LW GVK W +LT  W++    E+DA+ +EK V LY +T  QA KG+P NPV  RLKD VD F+P+LP VVNLRN  LQ RHWD
Sbjct:  807 KLWRGVKEWSQLTAGWVIQALLEVDAAEMEKQVNLYTKTVFQAQKGMPGNPVVPRLKDSVDTFTPLLPCVVNLRNNNLQERHWD 890          
BLAST of mRNA_Ecto-sp13_S_contig17866.5436.1 vs. uniprot
Match: A0A7S1XLL0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLL0_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.030e-18
Identity = 39/82 (47.56%), Postives = 50/82 (60.98%), Query Frame = 1
Query:   10 WTGVKAWKELTETWLLTPFTEIDASTLEKHVTLYQRTCHQAVKGLPSNPVAKRLKDDVDNFSPVLPVVVNLRNQGLQGRHWD 255
            WT VK W  +T  W+      +DA  LEK VT + R   +A KGLP NP    LK  V+ FSPVLPVV +LRN+ ++ RHW+
Sbjct:   37 WTAVKDWSSITSKWMGMVLGAVDAGDLEKEVTRFNRIVVKASKGLPQNPKVPELKAAVEEFSPVLPVVRDLRNESIKDRHWE 118          
BLAST of mRNA_Ecto-sp13_S_contig17866.5436.1 vs. uniprot
Match: A0A078B9W6_STYLE (Dynein heavy chain axonemal n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078B9W6_STYLE)

HSP 1 Score: 76.6 bits (187), Expect = 1.970e-14
Identity = 31/82 (37.80%), Postives = 48/82 (58.54%), Query Frame = 1
Query:    7 LWTGVKAWKELTETWLLTPFTEIDASTLEKHVTLYQRTCHQAVKGLPSNPVAKRLKDDVDNFSPVLPVVVNLRNQGLQGRHW 252
            +W  ++ W+E TE W+   F  I+A  ++     + + C++  K LP NP+A+RLK  VD F   +PVV+ LRN  L+  HW
Sbjct: 1284 MWRSLREWEEKTEGWIKEKFNNINAKEIQGKADQFSKICNRVEKNLPPNPIAQRLKHQVDTFKAAMPVVIALRNDNLKQEHW 1365          
BLAST of mRNA_Ecto-sp13_S_contig17866.5436.1 vs. uniprot
Match: A0A7S2CHN7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CHN7_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.390e-14
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 1
Query:    7 LWTGVKAWKELTETWLLTPFTEIDASTLEKHVTLYQRTCHQAVKGLPSNPVAKRLKDDVDNFSPVLPVVVNL 222
            LW  VK W   T+TW   P   +DA TLEK VT Y RT  +A++ LP NPV  +L++ V  + PV+P+V +L
Sbjct:   56 LWQAVKNWGTATKTWEAMPLETVDAETLEKEVTAYNRTVARAIQRLPGNPVGPKLRERVKEWLPVVPLVADL 127          
BLAST of mRNA_Ecto-sp13_S_contig17866.5436.1 vs. uniprot
Match: UPI0012DFBC63 (LOW QUALITY PROTEIN: dynein heavy chain 6, axonemal n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=UPI0012DFBC63)

HSP 1 Score: 73.2 bits (178), Expect = 3.230e-13
Identity = 34/83 (40.96%), Postives = 46/83 (55.42%), Query Frame = 1
Query:    7 LWTGVKAWKELTETWLLTPFTEIDASTLEKHVTLYQRTCHQAVKGLPSNPVAKRLKDDVDNFSPVLPVVVNLRNQGLQGRHWD 255
            LW  ++ W  L   W+   F E+D  TL   V  Y +  +Q  KGLP N V  RLK+ V+     LPV+ +LRN  L+GRHW+
Sbjct:  758 LWDSLEEWDALQAGWMECKFEELDPETLSAQVNKYAKCVNQLEKGLPPNSVVPRLKEHVEGMREKLPVITDLRNPCLKGRHWE 840          
BLAST of mRNA_Ecto-sp13_S_contig17866.5436.1 vs. uniprot
Match: UPI001C3E85BD (LOW QUALITY PROTEIN: dynein axonemal heavy chain 6-like n=1 Tax=Oncorhynchus tshawytscha TaxID=74940 RepID=UPI001C3E85BD)

HSP 1 Score: 73.2 bits (178), Expect = 3.230e-13
Identity = 34/83 (40.96%), Postives = 46/83 (55.42%), Query Frame = 1
Query:    7 LWTGVKAWKELTETWLLTPFTEIDASTLEKHVTLYQRTCHQAVKGLPSNPVAKRLKDDVDNFSPVLPVVVNLRNQGLQGRHWD 255
            LW  ++ W  L   W+   F E+D  TL   V  Y +  +Q  KGLP N V  RLK+ V+     LPV+ +LRN  L+GRHW+
Sbjct:  913 LWDSLEEWDALQAGWMECKFEELDPETLSAQVNKYAKCVNQLEKGLPPNSVVPRLKEHVEGMREKLPVITDLRNPCLKGRHWE 995          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17866.5436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK16_ECTSI2.100e-4997.65Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5KZG2_9PHAE1.190e-4790.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZBK4_9STRA5.610e-3065.06Dynein heavy chain n=1 Tax=Tribonema minus TaxID=3... [more]
F0Y0N3_AURAN1.340e-2662.65Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SJ49_9STRA1.180e-2557.14Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S1XLL0_9STRA5.030e-1847.56Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A078B9W6_STYLE1.970e-1437.80Dynein heavy chain axonemal n=1 Tax=Stylonychia le... [more]
A0A7S2CHN7_9STRA5.390e-1445.83Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
UPI0012DFBC633.230e-1340.96LOW QUALITY PROTEIN: dynein heavy chain 6, axonema... [more]
UPI001C3E85BD3.230e-1340.96LOW QUALITY PROTEIN: dynein axonemal heavy chain 6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17866contigEcto-sp13_S_contig17866:2376..2839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score176.8
Seed ortholog evalue4.3e-42
Seed eggNOG ortholog2880.D8LK16
Model size257
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
Cds size255
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462925.2720227-CDS-Ecto-sp13_S_contig17866:2375..24561681462925.2720227-CDS-Ecto-sp13_S_contig17866:2375..2456Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17866 2376..2456 -
1681462925.282052-CDS-Ecto-sp13_S_contig17866:2665..28391681462925.282052-CDS-Ecto-sp13_S_contig17866:2665..2839Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17866 2666..2839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17866.5436.1prot_Ecto-sp13_S_contig17866.5436.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17866 2376..2839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17866.5436.1

>prot_Ecto-sp13_S_contig17866.5436.1 ID=prot_Ecto-sp13_S_contig17866.5436.1|Name=mRNA_Ecto-sp13_S_contig17866.5436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
KRLWTGVKAWKELTETWLLTPFTEIDASTLEKHVTLYQRTCHQAVKGLPS
NPVAKRLKDDVDNFSPVLPVVVNLRNQGLQGRHWD
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mRNA from alignment at Ecto-sp13_S_contig17866:2376..2839-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17866.5436.1 ID=mRNA_Ecto-sp13_S_contig17866.5436.1|Name=mRNA_Ecto-sp13_S_contig17866.5436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=464bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17866:2376..2839- (Ectocarpus species13 EcNAP12_S_4_19m)
AAACGTCTGTGGACCGGAGTGAAGGCGTGGAAGGAGCTCACCGAAACATG GCTGCTGACCCCCTTCACAGAGATCGATGCTAGCACCCTGGAGAAGCACG TGACGCTGTACCAGAGGACGTGCCACCAGGCCGTGAAGGGACTGCCTTCC AACCCCGTCGCGAAGAGACTGAAGGCGAGCAGCCTCGTGTCGTTCATGGT ATCGTTTTCGCACAAGCGTTTCTCACCACCCTGCCCCTACCCTGCTACTT CAAACGTTTTCTCGCACACTACATCACACCCGACCCCGCTCATTGAACTT GTCTCGAGGCGTCTTCTGCCTGCTAGTCTTTTTGTTTGGCTGCCCTGATC GTCGACAACTCAATGCGTTCACCCCCAAAACAGGATGATGTGGACAACTT CAGCCCCGTCCTTCCCGTGGTAGTCAACCTCCGCAACCAGGGCCTCCAGG GAAGGCATTGGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17866:2376..2839-

>mRNA_Ecto-sp13_S_contig17866.5436.1 ID=mRNA_Ecto-sp13_S_contig17866.5436.1|Name=mRNA_Ecto-sp13_S_contig17866.5436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17866:2376..2839- (Ectocarpus species13 EcNAP12_S_4_19m)
AAACGTCTGTGGACCGGAGTGAAGGCGTGGAAGGAGCTCACCGAAACATG
GCTGCTGACCCCCTTCACAGAGATCGATGCTAGCACCCTGGAGAAGCACG
TGACGCTGTACCAGAGGACGTGCCACCAGGCCGTGAAGGGACTGCCTTCC
AACCCCGTCGCGAAGAGACTGAAGGATGATGTGGACAACTTCAGCCCCGT
CCTTCCCGTGGTAGTCAACCTCCGCAACCAGGGCCTCCAGGGAAGGCATT
GGGAC
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