prot_Ecto-sp13_S_contig1786.5432.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1786.5432.1
Unique Nameprot_Ecto-sp13_S_contig1786.5432.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length737
Homology
BLAST of mRNA_Ecto-sp13_S_contig1786.5432.1 vs. uniprot
Match: D7FTY6_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY6_ECTSI)

HSP 1 Score: 1010 bits (2612), Expect = 0.000e+0
Identity = 546/595 (91.76%), Postives = 563/595 (94.62%), Query Frame = 0
Query:  142 MGSLHGVIETKDNAVQRHKRESDRLRREIKRLHVEREERKGQENAMIVAATQNSRLLKLLEQEELKRESVLTERDEALAEVGELKHRVRTSDEQHAKRTSGLEVKLIKAIGENLALKEKYSTTDEQIETLXXXXXXXXXXXXXXXXXAETALSTLRQSQYRVISELQESRDELQRYKDQAETKGDELAVCRQQNAELEIRLGTLQSDLSSMERTSSEREAAADEDSRLAQARLEKEISQSEILHNKVASMSRAILRLVEGHKELKAQVVKHEAEEARLGDQIEEARKRELRFQQKVVRLKSSLNMETTHKRLYGALDKFNSQIAKPPLPAANGGGNLPHGEALAIGPSTQRVKGDALRCRRQLLSNHMALFGQVAGRDDGTSARHALNELNLSDCGLDDFDVHGVMELTCSCPRLEVLNLSMNYIGDAGAASLATVLRLASCGLRRLDLTCNQMSMEGVRVLAKALEENCSRGVSHVYVHSEGRIDALGRRKEDKRQSVKERNSMPDEEQDALGLFFSVVVVDARDNHPQPAGNPDTALPVPRRGKRQIGHIAAARGLMGSKKKGSGTKPERNSHNSLLARQSQVRDFMTKVAYN 736
            MGSLHGVIETKDNAVQ+HKRESDRLRREIKRLHVEREER+GQENAMIVAATQNSRLLKLLEQEELKRESVLTERDEALAEV ELKHRVRTSDEQHAKRTSGLEVKLIKAIGENLALKEKYS+TDE+IETL                 AETALSTLRQSQYRVISELQESRDELQRYKDQAETKGDELAVCRQQNAELE+RLGTLQSDL+SMERTSSEREAAADEDSRLAQARLEKEIS SE LHNKVASMSR ILRLVE HK+LKAQVVKHEAEEARLGDQIEEARKRE+RFQQKVVRLKSSL +ETTHKRLY ALDKFNSQ+ KPPLPAANGGGNLPH EALAIGPSTQR+KGDALRCRRQLLSNHMALFG VAGRDDGTSARHALNEL+LSDCGLDDFDVHGVMEL CSCPRLEVLNLSMNYIGDAGAASLATVLRLASCGLRRLDLTCNQMSMEGVRVLAKALEENCSRGVSHVYVHSEGRIDALGR KEDK QSVKERNS+PDEEQDALG+FFSVV+VDARDNHPQPAGNPDTALP+ RRGKRQIGHIAAARGL+GSKKKGSG KPERNSHNSLLARQSQVRDFMTKVAYN
Sbjct:    1 MGSLHGVIETKDNAVQKHKRESDRLRREIKRLHVEREERQGQENAMIVAATQNSRLLKLLEQEELKRESVLTERDEALAEVSELKHRVRTSDEQHAKRTSGLEVKLIKAIGENLALKEKYSSTDEKIETLTKELESARKQAKFDKETAETALSTLRQSQYRVISELQESRDELQRYKDQAETKGDELAVCRQQNAELEMRLGTLQSDLNSMERTSSEREAAADEDSRLAQARLEKEISLSESLHNKVASMSRTILRLVERHKDLKAQVVKHEAEEARLGDQIEEARKREVRFQQKVVRLKSSLTVETTHKRLYAALDKFNSQMTKPPLPAANGGGNLPHDEALAIGPSTQRIKGDALRCRRQLLSNHMALFGLVAGRDDGTSARHALNELDLSDCGLDDFDVHGVMELACSCPRLEVLNLSMNYIGDAGAASLATVLRLASCGLRRLDLTCNQMSMEGVRVLAKALEENCSRGVSHVYVHSEGRIDALGREKEDKCQSVKERNSVPDEEQDALGMFFSVVIVDARDNHPQPAGNPDTALPLARRGKRQIGHIAAARGLIGSKKKGSGIKPERNSHNSLLARQSQVRDFMTKVAYN 595          
BLAST of mRNA_Ecto-sp13_S_contig1786.5432.1 vs. uniprot
Match: A0A835Z915_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z915_9STRA)

HSP 1 Score: 189 bits (481), Expect = 2.170e-47
Identity = 204/626 (32.59%), Postives = 298/626 (47.60%), Query Frame = 0
Query:   97 PRTKEETLHLIKLRDGMISAKHQEVLLLSRQNQGLREGIDSVEKEMGSLHGVIETKDNAVQRHKRESDRLRREIKRLHVEREERKGQENAMIVAATQNSRLLKLLEQEELKRESVLTERDEALAEVGELKHRVRTSDEQHAKRTSGLEVKLIKAIGENLALKEKYSTTDEQIETLXXXXXXXXXXXXXXXXXAETALSTLRQSQYRVISELQESRDELQRYKDQAETKGDELAVCRQQNAELEIRLGTLQSDLSSMERTSSEREAAADEDSRLAQARLEKEISQSEILHNKVASMSRAILRLVEGHKELKAQVVKHEAEEARLGDQIEEARKRELRFQQKVVRLKSSLNMETTHKRLYGALDKFNSQIAKPPLPAANGGGNLPHGE-------------ALAIGPSTQRVKGDALRCRRQLLSNHMALFGQVAGRDDGTSARHAL--------------------------NEL--NLSDCGLDDFDVHGVMELTCSCPRLEVL-----NLSMNYIGDAGAASLATVLRLASCGLRRLDLTCNQMSMEGVRVLAKALEENCSRGVSHVYVHSEGRIDALGRRKEDKRQSVKERNSMPDEEQDALG--LFFSVVVVDARDNHPQPAG 674
            P +K + L L+++RDGM+ AK +EV L++ QN  LR+  ++ E EM +L   ++ K+ A+   ++ S+R  R +KRL  E E   G+E A+ ++A Q++RLLKLLEQEE+KRE +L E+D A++EVGELK RV    + HA++   L+++L KA+ +  A  E ++         XXXXXXXXXXXXXXXXX                            ++D  E     L+    + A  E +L    + L+ +   + + +A A ED+ LA AR E + +  E L  +V   +                                       + +  V +L+S+ +ME T +RL+ ALDKFN+Q+A    P   G                     A  +  S           +RQ+LS    LF Q A      SA +A+                          +EL   L +CG+ D D+  V +          L     +LS N+I D GA+ LA VLRL  C ++RLDL  NQ++MEGVR LA+ALE     G+SHVYVH+EGRIDALG ++          ++   E+Q  LG     S+ VVD RDN   PAG
Sbjct:   33 PFSKVQLLRLLRVRDGMLEAKQKEVSLVAHQNGLLRDQTNAAEAEMAALQLTLKEKEQALSAERKVSERAGRAVKRLQNEMEHYLGREQAIHMSAAQSTRLLKLLEQEEIKREHLLREKDAAVSEVGELKARVAALTKTHAEQEVDLQLRLAKALRDLAATNEHHAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRDGGEDAAALLSALSHKGAAQEAQLAAALAALADVRAAARDAQARAAEDAALADARAESDRAAKEKLQERVRDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTALTQQLRGVVDQLRSAASMEATQRRLHRALDKFNTQMA----PGVGGXXXXXXXXXXXXXXXXFVADMAGGVTASAWTALQQQTWSKRQMLS----LFVQHAAATAAASAANAVVPDSGACDADSPASFKMERSGAGGTPSELLIPLGNCGIVDSDIDCVADTLARVAEYTALPPLMVDLSANFITDTGASQLAAVLRLDGCKVKRLDLRYNQVTMEGVRALARALESCTHHGISHVYVHAEGRIDALGVQQPQCTTGGSSTDAAATEQQ-PLGPDSLVSIAVVDVRDNASSPAG 649          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1786.5432.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTY6_ECTSI0.000e+091.76Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835Z915_9STRA2.170e-4732.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 201..221
NoneNo IPR availableCOILSCoilCoilcoord: 149..176
NoneNo IPR availableCOILSCoilCoilcoord: 304..327
NoneNo IPR availableCOILSCoilCoilcoord: 402..429
NoneNo IPR availableCOILSCoilCoilcoord: 335..355
NoneNo IPR availableCOILSCoilCoilcoord: 254..288
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 553..580
e-value: 0.13
score: 21.4
coord: 582..609
e-value: 0.0055
score: 25.9
NoneNo IPR availablePANTHERPTHR24107FAMILY NOT NAMEDcoord: 526..612
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 527..610
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 552..575
e-value: 0.0041
score: 17.1
coord: 582..604
e-value: 0.15
score: 12.2
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 506..628
e-value: 1.5E-19
score: 71.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1786contigEcto-sp13_S_contig1786:547..10001 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1786.5432.1mRNA_Ecto-sp13_S_contig1786.5432.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1786 547..10001 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1786.5432.1 ID=prot_Ecto-sp13_S_contig1786.5432.1|Name=mRNA_Ecto-sp13_S_contig1786.5432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=737bp
QVDTSPTTSGSGQEEDSLEESIGSVTDDSASKIRTCDSDSSSSTARFSPL
VTENSALSTSISARSSGARSATTPSRTKRGRKGKTKNGRSRPVDPAPRTK
EETLHLIKLRDGMISAKHQEVLLLSRQNQGLREGIDSVEKEMGSLHGVIE
TKDNAVQRHKRESDRLRREIKRLHVEREERKGQENAMIVAATQNSRLLKL
LEQEELKRESVLTERDEALAEVGELKHRVRTSDEQHAKRTSGLEVKLIKA
IGENLALKEKYSTTDEQIETLQKELEFARKQAKFDKETAETALSTLRQSQ
YRVISELQESRDELQRYKDQAETKGDELAVCRQQNAELEIRLGTLQSDLS
SMERTSSEREAAADEDSRLAQARLEKEISQSEILHNKVASMSRAILRLVE
GHKELKAQVVKHEAEEARLGDQIEEARKRELRFQQKVVRLKSSLNMETTH
KRLYGALDKFNSQIAKPPLPAANGGGNLPHGEALAIGPSTQRVKGDALRC
RRQLLSNHMALFGQVAGRDDGTSARHALNELNLSDCGLDDFDVHGVMELT
CSCPRLEVLNLSMNYIGDAGAASLATVLRLASCGLRRLDLTCNQMSMEGV
RVLAKALEENCSRGVSHVYVHSEGRIDALGRRKEDKRQSVKERNSMPDEE
QDALGLFFSVVVVDARDNHPQPAGNPDTALPVPRRGKRQIGHIAAARGLM
GSKKKGSGTKPERNSHNSLLARQSQVRDFMTKVAYN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf