mRNA_Ecto-sp13_S_contig1786.5432.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1786.5432.1 vs. uniprot
Match: D7FTY6_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY6_ECTSI) HSP 1 Score: 1010 bits (2612), Expect = 0.000e+0 Identity = 546/595 (91.76%), Postives = 563/595 (94.62%), Query Frame = 1
Query: 424 MGSLHGVIETKDNAVQRHKRESDRLRREIKRLHVEREERKGQENAMIVAATQNSRLLKLLEQEELKRESVLTERDEALAEVGELKHRVRTSDEQHAKRTSGLEVKLIKAIGENLALKEKYSTTDEQIETLXXXXXXXXXXXXXXXXXAETALSTLRQSQYRVISELQESRDELQRYKDQAETKGDELAVCRQQNAELEIRLGTLQSDLSSMERTSSEREAAADEDSRLAQARLEKEISQSEILHNKVASMSRAILRLVEGHKELKAQVVKHEAEEARLGDQIEEARKRELRFQQKVVRLKSSLNMETTHKRLYGALDKFNSQIAKPPLPAANGGGNLPHGEALAIGPSTQRVKGDALRCRRQLLSNHMALFGQVAGRDDGTSARHALNELNLSDCGLDDFDVHGVMELTCSCPRLEVLNLSMNYIGDAGAASLATVLRLASCGLRRLDLTCNQMSMEGVRVLAKALEENCSRGVSHVYVHSEGRIDALGRRKEDKRQSVKERNSMPDEEQDALGLFFSVVVVDARDNHPQPAGNPDTALPVPRRGKRQIGHIAAARGLMGSKKKGSGTKPERNSHNSLLARQSQVRDFMTKVAYN 2208
MGSLHGVIETKDNAVQ+HKRESDRLRREIKRLHVEREER+GQENAMIVAATQNSRLLKLLEQEELKRESVLTERDEALAEV ELKHRVRTSDEQHAKRTSGLEVKLIKAIGENLALKEKYS+TDE+IETL AETALSTLRQSQYRVISELQESRDELQRYKDQAETKGDELAVCRQQNAELE+RLGTLQSDL+SMERTSSEREAAADEDSRLAQARLEKEIS SE LHNKVASMSR ILRLVE HK+LKAQVVKHEAEEARLGDQIEEARKRE+RFQQKVVRLKSSL +ETTHKRLY ALDKFNSQ+ KPPLPAANGGGNLPH EALAIGPSTQR+KGDALRCRRQLLSNHMALFG VAGRDDGTSARHALNEL+LSDCGLDDFDVHGVMEL CSCPRLEVLNLSMNYIGDAGAASLATVLRLASCGLRRLDLTCNQMSMEGVRVLAKALEENCSRGVSHVYVHSEGRIDALGR KEDK QSVKERNS+PDEEQDALG+FFSVV+VDARDNHPQPAGNPDTALP+ RRGKRQIGHIAAARGL+GSKKKGSG KPERNSHNSLLARQSQVRDFMTKVAYN
Sbjct: 1 MGSLHGVIETKDNAVQKHKRESDRLRREIKRLHVEREERQGQENAMIVAATQNSRLLKLLEQEELKRESVLTERDEALAEVSELKHRVRTSDEQHAKRTSGLEVKLIKAIGENLALKEKYSSTDEKIETLTKELESARKQAKFDKETAETALSTLRQSQYRVISELQESRDELQRYKDQAETKGDELAVCRQQNAELEMRLGTLQSDLNSMERTSSEREAAADEDSRLAQARLEKEISLSESLHNKVASMSRTILRLVERHKDLKAQVVKHEAEEARLGDQIEEARKREVRFQQKVVRLKSSLTVETTHKRLYAALDKFNSQMTKPPLPAANGGGNLPHDEALAIGPSTQRIKGDALRCRRQLLSNHMALFGLVAGRDDGTSARHALNELDLSDCGLDDFDVHGVMELACSCPRLEVLNLSMNYIGDAGAASLATVLRLASCGLRRLDLTCNQMSMEGVRVLAKALEENCSRGVSHVYVHSEGRIDALGREKEDKCQSVKERNSVPDEEQDALGMFFSVVIVDARDNHPQPAGNPDTALPLARRGKRQIGHIAAARGLIGSKKKGSGIKPERNSHNSLLARQSQVRDFMTKVAYN 595
BLAST of mRNA_Ecto-sp13_S_contig1786.5432.1 vs. uniprot
Match: A0A835Z915_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z915_9STRA) HSP 1 Score: 189 bits (481), Expect = 2.170e-47 Identity = 204/626 (32.59%), Postives = 298/626 (47.60%), Query Frame = 1
Query: 289 PRTKEETLHLIKLRDGMISAKHQEVLLLSRQNQGLREGIDSVEKEMGSLHGVIETKDNAVQRHKRESDRLRREIKRLHVEREERKGQENAMIVAATQNSRLLKLLEQEELKRESVLTERDEALAEVGELKHRVRTSDEQHAKRTSGLEVKLIKAIGENLALKEKYSTTDEQIETLXXXXXXXXXXXXXXXXXAETALSTLRQSQYRVISELQESRDELQRYKDQAETKGDELAVCRQQNAELEIRLGTLQSDLSSMERTSSEREAAADEDSRLAQARLEKEISQSEILHNKVASMSRAILRLVEGHKELKAQVVKHEAEEARLGDQIEEARKRELRFQQKVVRLKSSLNMETTHKRLYGALDKFNSQIAKPPLPAANGGGNLPHGE-------------ALAIGPSTQRVKGDALRCRRQLLSNHMALFGQVAGRDDGTSARHAL--------------------------NEL--NLSDCGLDDFDVHGVMELTCSCPRLEVL-----NLSMNYIGDAGAASLATVLRLASCGLRRLDLTCNQMSMEGVRVLAKALEENCSRGVSHVYVHSEGRIDALGRRKEDKRQSVKERNSMPDEEQDALG--LFFSVVVVDARDNHPQPAG 2022
P +K + L L+++RDGM+ AK +EV L++ QN LR+ ++ E EM +L ++ K+ A+ ++ S+R R +KRL E E G+E A+ ++A Q++RLLKLLEQEE+KRE +L E+D A++EVGELK RV + HA++ L+++L KA+ + A E ++ XXXXXXXXXXXXXXXXX ++D E L+ + A E +L + L+ + + + +A A ED+ LA AR E + + E L +V + + + V +L+S+ +ME T +RL+ ALDKFN+Q+A P G A + S +RQ+LS LF Q A SA +A+ +EL L +CG+ D D+ V + L +LS N+I D GA+ LA VLRL C ++RLDL NQ++MEGVR LA+ALE G+SHVYVH+EGRIDALG ++ ++ E+Q LG S+ VVD RDN PAG
Sbjct: 33 PFSKVQLLRLLRVRDGMLEAKQKEVSLVAHQNGLLRDQTNAAEAEMAALQLTLKEKEQALSAERKVSERAGRAVKRLQNEMEHYLGREQAIHMSAAQSTRLLKLLEQEEIKREHLLREKDAAVSEVGELKARVAALTKTHAEQEVDLQLRLAKALRDLAATNEHHAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRDGGEDAAALLSALSHKGAAQEAQLAAALAALADVRAAARDAQARAAEDAALADARAESDRAAKEKLQERVRDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTALTQQLRGVVDQLRSAASMEATQRRLHRALDKFNTQMA----PGVGGXXXXXXXXXXXXXXXXFVADMAGGVTASAWTALQQQTWSKRQMLS----LFVQHAAATAAASAANAVVPDSGACDADSPASFKMERSGAGGTPSELLIPLGNCGIVDSDIDCVADTLARVAEYTALPPLMVDLSANFITDTGASQLAAVLRLDGCKVKRLDLRYNQVTMEGVRALARALESCTHHGISHVYVHAEGRIDALGVQQPQCTTGGSSTDAAATEQQ-PLGPDSLVSIAVVDVRDNASSPAG 649 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1786.5432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1786.5432.1 >prot_Ecto-sp13_S_contig1786.5432.1 ID=prot_Ecto-sp13_S_contig1786.5432.1|Name=mRNA_Ecto-sp13_S_contig1786.5432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=737bp QVDTSPTTSGSGQEEDSLEESIGSVTDDSASKIRTCDSDSSSSTARFSPLback to top mRNA from alignment at Ecto-sp13_S_contig1786:547..10001- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1786.5432.1 ID=mRNA_Ecto-sp13_S_contig1786.5432.1|Name=mRNA_Ecto-sp13_S_contig1786.5432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=9455bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1786:547..10001- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1786:547..10001- >mRNA_Ecto-sp13_S_contig1786.5432.1 ID=mRNA_Ecto-sp13_S_contig1786.5432.1|Name=mRNA_Ecto-sp13_S_contig1786.5432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2211bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1786:547..10001- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |