mRNA_Ecto-sp13_S_contig10583.543.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10583.543.1
Unique NamemRNA_Ecto-sp13_S_contig10583.543.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10583.543.1 vs. uniprot
Match: D7FJU5_ECTSI (alpha-1,2-Mannosidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU5_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 2.160e-45
Identity = 74/78 (94.87%), Postives = 75/78 (96.15%), Query Frame = 1 
Query:    1 AVLQVNLSNGKTGGGSYSVLSELGTLQLEFRYLSHEVGDEKYARTAMRAFDFLAGKTVPHGLYPIRINPNTGKFTSSQ 234
            A   VNLSNGKTGGGSYSVLSELGTLQLEFRYLSHEVGDEKYARTAMRAFDFLAG+TVPHGLYPIRINPNTGKFTSSQ
Sbjct:    6 AEFDVNLSNGKTGGGSYSVLSELGTLQLEFRYLSHEVGDEKYARTAMRAFDFLAGRTVPHGLYPIRINPNTGKFTSSQ 83
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10583.543.1 vs. uniprot
Match: D7FS40_ECTSI (alpha-1,2-Mannosidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS40_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 4.940e-41
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:   13 VNLSNGKTGGGSYSVLSELGTLQLEFRYLSHEVGDEKYARTAMRAFDFLAGKTVPHGLYPIRINPNTGKFTSSQ 234
            VNLSNGKTGGGSYSVLSELGTLQLEFRYLSHEVGDEKYARTAMRAFDFLAG+TVPHGLYPIRINPNTGKFTSSQ
Sbjct:  430 VNLSNGKTGGGSYSVLSELGTLQLEFRYLSHEVGDEKYARTAMRAFDFLAGRTVPHGLYPIRINPNTGKFTSSQ 503
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10583.543.1 vs. uniprot
Match: A0A6H5L0M9_9PHAE (alpha-1,2-Mannosidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M9_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.060e-24
Identity = 56/75 (74.67%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:   13 VNLSNGKTGGGSYSVLSELGTLQLEFRYLSHEVGDEKYARTAMRAFDFLAGKTVPHGLYPIRINPNTGKFTSSQA 237
            VNLSNGKTGGGSYSVLSELGTLQ                  AMRAFDFLAG+TVPHGLYPIRINPNTGKFTSSQA
Sbjct:  432 VNLSNGKTGGGSYSVLSELGTLQ------------------AMRAFDFLAGRTVPHGLYPIRINPNTGKFTSSQA 488
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10583.543.1 vs. uniprot
Match: D8LGK4_ECTSI (alpha-1,2-Mannosidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK4_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.190e-12
Identity = 36/75 (48.00%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:   10 QVNLSNGKTGGGSYSVLSELGTLQLEFRYLSHEVGDEKYARTAMRAFDFLAGKTVPHGLYPIRINPNTGKFTSSQ 234
            +V+  + K  GGS SVL+E+GTLQ+EFRYLS   G  KYA    + FD + G     GLYPI +NP+ G+   SQ
Sbjct:  566 RVSFRSHKNSGGSKSVLAEIGTLQVEFRYLSKITGIPKYADKVNKVFDHMYGLPSKDGLYPIFVNPSNGQTVGSQ 640
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10583.543.1 vs. uniprot
Match: A0A2G9UFW4_TELCI (alpha-1,2-Mannosidase n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9UFW4_TELCI)

HSP 1 Score: 68.9 bits (167), Expect = 7.560e-12
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:    1 AVLQVNLSNGKTGG---GSYSVLSELGTLQLEFRYLSHEVGDEKYARTAMRAFDFLAGKTVPHGLYPIRINPNTGKFTS 228
            A++ V   + K  G   G  S+LSE G+LQLEF YLSH  G++ Y+    R  DFL     P+GLYP+ +NP TGK+ S
Sbjct:  269 AIVNVATGSAKNYGWASGQSSILSEFGSLQLEFDYLSHVTGNKIYSEKIERIRDFLTNMDKPNGLYPLYLNPKTGKWGS 347
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10583.543.1 vs. uniprot
Match: A0A5A8EAJ7_CAFRO (alpha-1,2-Mannosidase n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EAJ7_CAFRO)

HSP 1 Score: 68.2 bits (165), Expect = 1.440e-11
Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:   10 QVNLSNGKTGG----GSYSVLSELGTLQLEFRYLSHEVGDEKYARTAMRAFDFLAGKTVPHGLYPIRINPNTGKFTSSQ 234
            Q+NL +G+       GS S+L+E+GT+Q+E RYLSH  G   Y R A  A   L     PHGLYPI I+P TG+ T+ Q
Sbjct:  642 QINLQSGQGHNSGWTGSASILAEVGTVQVEHRYLSHATGIPYYGRKAENAIHALRKHPQPHGLYPIYISPQTGQPTNRQ 720
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10583.543.1 vs. uniprot
Match: A0A5A8CLU8_CAFRO (alpha-1,2-Mannosidase n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CLU8_CAFRO)

HSP 1 Score: 68.2 bits (165), Expect = 1.450e-11
Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:   10 QVNLSNGKTGG----GSYSVLSELGTLQLEFRYLSHEVGDEKYARTAMRAFDFLAGKTVPHGLYPIRINPNTGKFTSSQ 234
            Q+NL +G+       GS S+L+E+GT+Q+E RYLSH  G   Y R A  A   L     PHGLYPI I+P TG+ T+ Q
Sbjct: 1032 QINLQSGQGHNSGWTGSASILAEVGTVQVEHRYLSHATGIPYYGRKAENAIHALRKHPQPHGLYPIYISPQTGQPTNRQ 1110
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10583.543.1 vs. uniprot
Match: A0A0N4WPP8_HAEPC (alpha-1,2-Mannosidase n=2 Tax=Haemonchus TaxID=6288 RepID=A0A0N4WPP8_HAEPC)

HSP 1 Score: 66.6 bits (161), Expect = 4.900e-11
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:    1 AVLQVNLSNGKTGG---GSYSVLSELGTLQLEFRYLSHEVGDEKYARTAMRAFDFLAGKTVPHGLYPIRINPNTGKFTS 228
            AV+ V   + K  G   G  S+LSE G+LQLEF YLSH  G++ Y+    R  +FL     P+GLYP+ +NP TGK+ S
Sbjct:  222 AVVNVVTGSAKNYGWASGQSSILSEFGSLQLEFDYLSHITGNKIYSDKIKRIREFLTAMDKPNGLYPLYLNPKTGKWGS 300
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10583.543.1 vs. uniprot
Match: A0A0L0DBH8_THETB (alpha-1,2-Mannosidase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DBH8_THETB)

HSP 1 Score: 65.9 bits (159), Expect = 8.980e-11
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:   37 GGGSYSVLSELGTLQLEFRYLSHEVGDEKYARTAMRAFDFLAGKTVPHGLYPIRINPNTGKFTSSQ 234
            GGG   +LSE+GT+QLEF+ LS   GD+KYA+ A +  D L     P GLYP+ ++ +TG F ++Q
Sbjct:  144 GGG---ILSEMGTMQLEFKVLSQRSGDDKYAKAAEKVIDLLDALPTPDGLYPLYVSLDTGTFRTNQ 206
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10583.543.1 vs. uniprot
Match: A0A3P8BI18_HELPZ (alpha-1,2-Mannosidase n=1 Tax=Heligmosomoides polygyrus TaxID=6339 RepID=A0A3P8BI18_HELPZ)

HSP 1 Score: 65.5 bits (158), Expect = 1.250e-10
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:   43 GSYSVLSELGTLQLEFRYLSHEVGDEKYARTAMRAFDFLAGKTVPHGLYPIRINPNTGKFTS 228
            G  S+LSE G+LQLEF YLSH  G+  ++    R  DFL+    P+GLYP+ +NP TGK++S
Sbjct:  242 GQSSILSEFGSLQLEFDYLSHVTGNTIFSDKIKRIRDFLSQLDKPNGLYPLYLNPKTGKWSS 303
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10583.543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJU5_ECTSI2.160e-4594.87alpha-1,2-Mannosidase n=1 Tax=Ectocarpus siliculos... [more]
D7FS40_ECTSI4.940e-4198.65alpha-1,2-Mannosidase n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5L0M9_9PHAE1.060e-2474.67alpha-1,2-Mannosidase n=1 Tax=Ectocarpus sp. CCAP ... [more]
D8LGK4_ECTSI1.190e-1248.00alpha-1,2-Mannosidase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A2G9UFW4_TELCI7.560e-1245.57alpha-1,2-Mannosidase n=1 Tax=Teladorsagia circumc... [more]
A0A5A8EAJ7_CAFRO1.440e-1146.84alpha-1,2-Mannosidase n=4 Tax=Cafeteria roenbergen... [more]
A0A5A8CLU8_CAFRO1.450e-1146.84alpha-1,2-Mannosidase n=1 Tax=Cafeteria roenbergen... [more]
A0A0N4WPP8_HAEPC4.900e-1145.57alpha-1,2-Mannosidase n=2 Tax=Haemonchus TaxID=628... [more]
A0A0L0DBH8_THETB8.980e-1146.97alpha-1,2-Mannosidase n=1 Tax=Thecamonas trahens A... [more]
A0A3P8BI18_HELPZ1.250e-1050.00alpha-1,2-Mannosidase n=1 Tax=Heligmosomoides poly... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10583contigEcto-sp13_S_contig10583:4712..5699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score151.8
Seed ortholog evalue1.4e-34
Seed eggNOG ortholog2880.D7FS40
Preferred nameMAN1A2
Model size238
KEGG koko:K01230
KEGG ReactionR05982,R06722
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00073,M00074
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0004571,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005793,GO:0005794,GO:0005802,GO:0005829,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006508,GO:0006511,GO:0006517,GO:0006807,GO:0006950,GO:0007275,GO:0007568,GO:0007585,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010498,GO:0012505,GO:0015923,GO:0015924,GO:0016020,GO:0016021,GO:0016787,GO:0016798,GO:0019538,GO:0019941,GO:0030163,GO:0030173,GO:0030323,GO:0030324,GO:0030433,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0033554,GO:0034645,GO:0034976,GO:0035010,GO:0035295,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0042221,GO:0042493,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0048286,GO:0048513,GO:0048731,GO:0048856,GO:0050896,GO:0051603,GO:0051716,GO:0060541,GO:0070085,GO:0071704,GO:0072347,GO:0097708,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1904381
Exons3
EggNOG free text desc.mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
EggNOG OGsKOG2204@1,KOG2204@2759
EC3.2.1.113
Cds size237
COG Functional cat.G
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462539.836958-CDS-Ecto-sp13_S_contig10583:4712..48141681462539.836958-CDS-Ecto-sp13_S_contig10583:4712..4814Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10583 4713..4814 -
1681462539.849677-CDS-Ecto-sp13_S_contig10583:5130..51841681462539.849677-CDS-Ecto-sp13_S_contig10583:5130..5184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10583 5131..5184 -
1681462539.860516-CDS-Ecto-sp13_S_contig10583:5618..56991681462539.860516-CDS-Ecto-sp13_S_contig10583:5618..5699Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10583 5619..5699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10583.543.1prot_Ecto-sp13_S_contig10583.543.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10583 4713..5699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10583.543.1

>prot_Ecto-sp13_S_contig10583.543.1 ID=prot_Ecto-sp13_S_contig10583.543.1|Name=mRNA_Ecto-sp13_S_contig10583.543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
AVLQVNLSNGKTGGGSYSVLSELGTLQLEFRYLSHEVGDEKYARTAMRAF
DFLAGKTVPHGLYPIRINPNTGKFTSSQA
back to top

mRNA from alignment at Ecto-sp13_S_contig10583:4712..5699-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10583.543.1 ID=mRNA_Ecto-sp13_S_contig10583.543.1|Name=mRNA_Ecto-sp13_S_contig10583.543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=988bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10583:4712..5699- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTGTTACAGGTGAACCTTTCAAACGGGAAGACAGGCGGGGGTTCTTA
CAGCGTACTCTCCGAATTGGGCACTCTTCAGGTGCGTATTGTAGTATTCA
AGCCGGCATCATGTCGTCGAATGGAGCACGTGTGGGACCACGTGACGGAC
AATCACTTTCCAGGAATATCAGTGATCCAAACGCAGCCGACGTTTCAACC
ATAAGGAGCATGTGGCGACGTTACGTTGGGTATCCTTCGTGCTTCTGGGG
GCTATTCTTCTTGGAAAACTCCGATCATGTTCAATTGTCGTATGCATGGG
TGGTATTGTTGTAGGGCGAACGTCAACGTGATGGCGACGACGTCGACGAC
ATTTTGTCCTGGATCCTCGTCGCGTCGTTCCACCACAATCTCAGTGTCGC
GCGGTATCTCGGTCGAGCGCGGGCTTGTAGTACAATCAATACACCCTTGG
CCCCTCTCGAAACGGATCCAGTCTTCGTCATGTTGTTGTTGCCTTTACCC
TCCACAACATCTCAGTTGGAATTCCGATATCTGAGTCATGAGGTGGGAGA
CGAGAAGTACGCCCGAACGGTGAGCGTGATTTGTGGCACTTCGCGAACTG
ATCGACACAATTAGGCCTCGACCAACGGGTGTTCGGAACCCTATCTTCAC
CTCGAGCTGTGCCATGGATCATTTGGTGGTGACTTGAAGGTTTCAATGCT
ACGGAAGCATCTGGCAAAGATGTCTCTATTTCTGATCCTCACACCGCCAA
AGATAACGCCAATTTGTTTTTCCTAAAAAGCGATTTGGACGAACTGACCA
GGAGTACTGAAAAAGCCATCGCGTCAACAACCAACAAGATTGCACACTCA
CAACCAACACCGACGTTTGTCAACGATTTGGCCAGGCGATGCGGGCGTTC
GACTTCCTGGCCGGAAAAACAGTTCCACACGGTCTTTACCCGATTCGGAT
TAACCCCAACACCGGAAAGTTCACTTCGTCCCAGGCAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10583:4712..5699-

>mRNA_Ecto-sp13_S_contig10583.543.1 ID=mRNA_Ecto-sp13_S_contig10583.543.1|Name=mRNA_Ecto-sp13_S_contig10583.543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10583:4712..5699- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTGTTACAGGTGAACCTTTCAAACGGGAAGACAGGCGGGGGTTCTTA
CAGCGTACTCTCCGAATTGGGCACTCTTCAGTTGGAATTCCGATATCTGA
GTCATGAGGTGGGAGACGAGAAGTACGCCCGAACGGCGATGCGGGCGTTC
GACTTCCTGGCCGGAAAAACAGTTCCACACGGTCTTTACCCGATTCGGAT
TAACCCCAACACCGGAAAGTTCACTTCGTCCCAGGCA
back to top