mRNA_Ecto-sp13_S_contig1785.5428.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1785.5428.1
Unique NamemRNA_Ecto-sp13_S_contig1785.5428.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1785.5428.1 vs. uniprot
Match: D7G3R6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3R6_ECTSI)

HSP 1 Score: 604 bits (1557), Expect = 1.680e-216
Identity = 318/356 (89.33%), Postives = 326/356 (91.57%), Query Frame = 1 
Query:    1 IANMIEETPMNATALLLQTRTSSTDSSVSPKPRWSKGVPPTCENTERNKPAPAALVSSTSSCDDDEPSPNTTKLLLESHTSTDGHISPKPRWTRGNPNAETDTGADGDDLDEXXXXXXXXXXVASSEDGREEPLPTSLRPGGRSSNASSSSGGDRKWYMAWRWLLEDDAASEPRLQRPTEDDPLVLPKLMDAEQELLCRNVELRLLEVGRQSTDVAALVEEYLRFMFLRKRLEGMPTLDPSPLVDDVWQAHITSDREYAAFCERTFGGDWPDGGVPHRKVDASQPMLYENTVGAYEHFFGAVAPAEWWPAPAVVVGAPCAALDVKGEEEEGPVDVSGRRTAFVRTEERKFHFAEED 1068
            + NMIEETPMNATALLLQTRTSSTDSSVSPKPRWSKG PPTCENTE NKPAPAA VSSTSSCDDDE SPNTTKLLLESHTSTDGHISPKPRWTRGNPN E DTGADGD LDE  XXXXXXXX ASSEDGREEPLPTSLRPGGRSSNAS SS GDRKWYMAWRWLLED+AASEPRLQRPTE DP VLPKLMDAE++LLCRNVELRLLEVGR STD+ ALVEEYLRFMFLRKRLEGM TLDPSPLVD VWQAHITSDREYAAFCERTFGG+  + GVPHR+VDASQPMLYENTVGAYEHFFGAVAP E WPAPAVVVG  C ALD KGEEEE PVDVSGRRTAFVRTEERK HFAEED
Sbjct:    1 MVNMIEETPMNATALLLQTRTSSTDSSVSPKPRWSKGAPPTCENTEPNKPAPAAPVSSTSSCDDDERSPNTTKLLLESHTSTDGHISPKPRWTRGNPNTEPDTGADGDKLDESSXXXXXXXXXASSEDGREEPLPTSLRPGGRSSNASGSSCGDRKWYMAWRWLLEDEAASEPRLQRPTEADPAVLPKLMDAERQLLCRNVELRLLEVGRHSTDIPALVEEYLRFMFLRKRLEGMLTLDPSPLVDVVWQAHITSDREYAAFCERTFGGEGLECGVPHREVDASQPMLYENTVGAYEHFFGAVAPFECWPAPAVVVGGACTALDGKGEEEEAPVDVSGRRTAFVRTEERKVHFAEED 356
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1785.5428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3R6_ECTSI1.680e-21689.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1785contigEcto-sp13_S_contig1785:545..3050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score60.1
Seed ortholog evalue2.4e-06
Seed eggNOG ortholog1174528.JH992898_gene5443
Model size1071
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.phenylacetate-CoA ligase activity
EggNOG OGs1G3Y0@1117,1JJS8@1189,COG4278@1,COG4278@2
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_000100.1
Cds size1062
COG Functional cat.H
Best tax levelStigonemataceae
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462924.525332-CDS-Ecto-sp13_S_contig1785:544..8481681462924.525332-CDS-Ecto-sp13_S_contig1785:544..848Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1785 545..848 -
1681462924.536865-CDS-Ecto-sp13_S_contig1785:1464..16101681462924.536865-CDS-Ecto-sp13_S_contig1785:1464..1610Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1785 1465..1610 -
1681462924.547062-CDS-Ecto-sp13_S_contig1785:2429..30411681462924.547062-CDS-Ecto-sp13_S_contig1785:2429..3041Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1785 2430..3041 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462924.5571-UTR-Ecto-sp13_S_contig1785:3041..30501681462924.5571-UTR-Ecto-sp13_S_contig1785:3041..3050Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1785 3042..3050 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1785.5428.1prot_Ecto-sp13_S_contig1785.5428.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1785 545..3041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1785.5428.1

>prot_Ecto-sp13_S_contig1785.5428.1 ID=prot_Ecto-sp13_S_contig1785.5428.1|Name=mRNA_Ecto-sp13_S_contig1785.5428.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=354bp
MIEETPMNATALLLQTRTSSTDSSVSPKPRWSKGVPPTCENTERNKPAPA
ALVSSTSSCDDDEPSPNTTKLLLESHTSTDGHISPKPRWTRGNPNAETDT
GADGDDLDESSSSSSSTATVASSEDGREEPLPTSLRPGGRSSNASSSSGG
DRKWYMAWRWLLEDDAASEPRLQRPTEDDPLVLPKLMDAEQELLCRNVEL
RLLEVGRQSTDVAALVEEYLRFMFLRKRLEGMPTLDPSPLVDDVWQAHIT
SDREYAAFCERTFGGDWPDGGVPHRKVDASQPMLYENTVGAYEHFFGAVA
PAEWWPAPAVVVGAPCAALDVKGEEEEGPVDVSGRRTAFVRTEERKFHFA
EED*
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mRNA from alignment at Ecto-sp13_S_contig1785:545..3050-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1785.5428.1 ID=mRNA_Ecto-sp13_S_contig1785.5428.1|Name=mRNA_Ecto-sp13_S_contig1785.5428.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2506bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1785:545..3050- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGCCAACATGATCGAAGAAACGCCGATGAACGCCACTGCGCTCCTTCT
TCAAACCCGCACAAGCAGCACCGACAGCAGTGTCTCTCCCAAGCCGCGTT
GGTCGAAGGGCGTCCCTCCCACGTGCGAAAACACAGAACGAAACAAGCCG
GCTCCCGCCGCACTCGTTTCATCGACGTCCTCGTGTGACGATGACGAGCC
TTCGCCGAACACCACCAAGCTGTTGCTTGAGAGCCACACCAGCACCGACG
GCCACATCTCGCCCAAGCCCCGCTGGACGCGAGGGAACCCGAACGCCGAA
ACCGACACTGGAGCTGACGGTGATGACCTGGACGAGTCCTCCTCCTCTTC
CTCTAGCACTGCCACAGTCGCATCGTCCGAGGACGGACGAGAGGAACCCT
TGCCGACCTCGCTTCGACCTGGCGGCCGCAGCAGTAACGCCTCCAGCAGC
AGCGGTGGCGACCGCAAGTGGTACATGGCCTGGAGGTGGTTGCTCGAGGA
CGACGCTGCCAGCGAGCCAAGACTGCAGAGGCCAACCGAGGACGATCCTC
TCGTGTTGCCGAAGCTGATGGACGCCGAGCAGGAGCTGCTGTGCCGCAAC
GTGGAGCTCAGGTTACTGGAGGTGAGCGTATTGACCGCTGCAGTCTCCGC
GCTTGTTCTTTTCTTGCCTCCTGTGAAGAGTTGTCAGATCTTCGTTTCGC
GCCTCTTTTTTGCCACCACTCCATCCAGCGCTACCTTCCTACAACGCATG
TTGATGTATATACCAACCAACACCTCCGAAACGGGCGTAGCTTTGAGTCG
TGGCCACAGCTACTCCATTATACTTTAGCATCCCGATGCACGTGAACAGA
AGAGAGGTTCATCGCGAAACCGTGTTTTCTCATTTTCGGGGCAGCACCAG
TTCTTTCCAGAAAATGCTCATCACGTATGATAATACTGCTGTATGACAGA
AAACACTACCCGTTCGAGATCATACCTTGTGCGTCATCTGCCCAAACGGC
ATCCACGCCCGGAAGACGGATGCCGGTGTCTACTCTATTGCAACATAAGT
TATTCTGAAAGACTTACCGCTGCAATATCGACATCCACGTGTCGAAAGAG
GATTCTTGCCTGCCCACCTACAACGCCGAACCCGTCGCTTCGACGAAGCC
CCATGCCCCTATGTACATCTACCGTAATGTAATCTTACTGCAGAGGGTGT
GCGTCCGAAATGGGAGAACGAGAGGGCTGATTTGATCTTTCAAAGGTAGA
CACATGCATCCGTATACTACGCCGGCGCTTCGCTGCTGCTCGTTACCATT
AGTGCCCACGCTCTGCAGAACATGTTCTCCCGACTTCCTTTTGCGAACGA
ATGGGCGCGTTCATCTATCGCAAGTGATCGAAGGTTTACATCAGCACCCG
CCTCAAAAATCCTTCCCAACTCTTACCACTGGGGCCTCAGGTCGGTCGGC
AATCTACGGACGTCGCCGCCCTGGTTGAGGAATACCTCCGCTTCATGTTC
CTTCGGAAAAGGCTCGAGGGCATGCCTACTCTCGACCCTTCACCTCTGGT
GGACGATGTCTGGCAGGCTCACATCACGTCGGACAGGTGCGTTTGCGGTA
AAACAAATCGGTGGCCAGCACGATAGTACGATACACATACATATAATTCC
GACCTTGCCTCACCGCGATCATTCTTGTGCGTTGTGTTGTACTGGCGTCA
AGCGCGGCAATCGAGTAGCGGTTGCAGGCGACCTACAGCGCCGAAATTCA
TCAAGAATCCGACAACGCTAATATAGTCTTCGCGGCTTTTTATTGTTTTG
ACCCTACTTCAAATCAGCGTTCACGGCACATGTGTCCTTTACTCCAACCC
GTGGTTGCAAGAGACATTCATCGACTCCCCCCTTGATTGTCCGAAAAGGG
GTGTGCAAGGGATGCCCTCCCTTTCCTTTTCCCTGCCTTGAAGATGCAGG
GAACAACCACATGCAGCCCCCCCACTACTTGTTGCAATGCCCCCAGCACA
GCATCATCCCCCACCACCCCTTTTCATATTTCCACGCCACCCTGGAAGAG
AAAAAAAAAAGGCGCTCTTGCCACCAAACCAAAACCCACATCAACTGGGG
TGGCGGAGCCAGCTCTGAAATACACCCGCTCCCCTTTGTTCGGCCTCTGT
CATGTCATACGTGTTCTCCGTGGCGAACCTCAACACCCGAATATCATCTC
AGGGAGTACGCCGCGTTCTGCGAGCGCACGTTCGGCGGGGATTGGCCAGA
CGGTGGGGTACCGCACAGGAAGGTCGACGCCTCGCAGCCCATGCTGTACG
AGAATACGGTCGGCGCTTACGAGCACTTCTTCGGCGCCGTTGCCCCCGCG
GAGTGGTGGCCTGCCCCCGCAGTGGTTGTCGGAGCTCCGTGTGCCGCGCT
GGATGTCAAGGGAGAGGAAGAAGAGGGACCGGTGGATGTCTCGGGAAGGC
GAACCGCTTTCGTCCGCACGGAGGAGAGGAAGTTTCATTTTGCGGAGGAA
GACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1785:545..3050-

>mRNA_Ecto-sp13_S_contig1785.5428.1 ID=mRNA_Ecto-sp13_S_contig1785.5428.1|Name=mRNA_Ecto-sp13_S_contig1785.5428.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1062bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1785:545..3050- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGAAGAAACGCCGATGAACGCCACTGCGCTCCTTCTTCAAACCCG
CACAAGCAGCACCGACAGCAGTGTCTCTCCCAAGCCGCGTTGGTCGAAGG
GCGTCCCTCCCACGTGCGAAAACACAGAACGAAACAAGCCGGCTCCCGCC
GCACTCGTTTCATCGACGTCCTCGTGTGACGATGACGAGCCTTCGCCGAA
CACCACCAAGCTGTTGCTTGAGAGCCACACCAGCACCGACGGCCACATCT
CGCCCAAGCCCCGCTGGACGCGAGGGAACCCGAACGCCGAAACCGACACT
GGAGCTGACGGTGATGACCTGGACGAGTCCTCCTCCTCTTCCTCTAGCAC
TGCCACAGTCGCATCGTCCGAGGACGGACGAGAGGAACCCTTGCCGACCT
CGCTTCGACCTGGCGGCCGCAGCAGTAACGCCTCCAGCAGCAGCGGTGGC
GACCGCAAGTGGTACATGGCCTGGAGGTGGTTGCTCGAGGACGACGCTGC
CAGCGAGCCAAGACTGCAGAGGCCAACCGAGGACGATCCTCTCGTGTTGC
CGAAGCTGATGGACGCCGAGCAGGAGCTGCTGTGCCGCAACGTGGAGCTC
AGGTTACTGGAGGTCGGTCGGCAATCTACGGACGTCGCCGCCCTGGTTGA
GGAATACCTCCGCTTCATGTTCCTTCGGAAAAGGCTCGAGGGCATGCCTA
CTCTCGACCCTTCACCTCTGGTGGACGATGTCTGGCAGGCTCACATCACG
TCGGACAGGGAGTACGCCGCGTTCTGCGAGCGCACGTTCGGCGGGGATTG
GCCAGACGGTGGGGTACCGCACAGGAAGGTCGACGCCTCGCAGCCCATGC
TGTACGAGAATACGGTCGGCGCTTACGAGCACTTCTTCGGCGCCGTTGCC
CCCGCGGAGTGGTGGCCTGCCCCCGCAGTGGTTGTCGGAGCTCCGTGTGC
CGCGCTGGATGTCAAGGGAGAGGAAGAAGAGGGACCGGTGGATGTCTCGG
GAAGGCGAACCGCTTTCGTCCGCACGGAGGAGAGGAAGTTTCATTTTGCG
GAGGAAGACTGA
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