mRNA_Ecto-sp13_S_contig1784.5422.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1784.5422.1
Unique NamemRNA_Ecto-sp13_S_contig1784.5422.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1784.5422.1 vs. uniprot
Match: A0A6H5KEQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEQ7_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 9.940e-11
Identity = 90/103 (87.38%), Postives = 91/103 (88.35%), Query Frame = 1 
Query:   31 SGGPADGTRAARPEGGDGVDAVAATAVAVAAVDGKQEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGRSWLLPPQVWAAIDSG 339
            SGGPADGTR A PEG DGVDAVAATAVAVAAVDG +EGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      VG RSWLLPPQVWAAID G
Sbjct:  938 SGGPADGTRTAGPEGCDGVDAVAATAVAVAAVDGGKEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-----VGDRSWLLPPQVWAAIDRG 1035
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BLAST of mRNA_Ecto-sp13_S_contig1784.5422.1 vs. uniprot
Match: D8LN71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN71_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.830e-10
Identity = 41/43 (95.35%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:   13 GGGDGDSGGPADGTRAARPEGGDGVDAVAATAVAVAAVDGKQE 141
            GGGDGDSGGPADGTRAARPEG D VDAVAATAVAVAAVDGKQE
Sbjct:  826 GGGDGDSGGPADGTRAARPEGDDVVDAVAATAVAVAAVDGKQE 868
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1784.5422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KEQ7_9PHAE9.940e-1187.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN71_ECTSI1.830e-1095.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1784contigEcto-sp13_S_contig1784:358..697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score67.8
Seed ortholog evalue3.7e-09
Seed eggNOG ortholog2880.D8LN71
Model size341
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs28JG8@1,2QRVD@2759
Cds size339
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462924.1232297-CDS-Ecto-sp13_S_contig1784:357..6961681462924.1232297-CDS-Ecto-sp13_S_contig1784:357..696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1784 358..696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1784.5422.1prot_Ecto-sp13_S_contig1784.5422.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1784 358..696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1784.5422.1

>prot_Ecto-sp13_S_contig1784.5422.1 ID=prot_Ecto-sp13_S_contig1784.5422.1|Name=mRNA_Ecto-sp13_S_contig1784.5422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
GGGEGGGDGDSGGPADGTRAARPEGGDGVDAVAATAVAVAAVDGKQEGGD
DGGDDEVTAGGGDERERSSPGGEDPARPAAATACRAAAAAAAAAVGGRSW
LLPPQVWAAIDSG
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mRNA from alignment at Ecto-sp13_S_contig1784:358..697+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1784.5422.1 ID=mRNA_Ecto-sp13_S_contig1784.5422.1|Name=mRNA_Ecto-sp13_S_contig1784.5422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=340bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1784:358..697+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGTGGAGAAGGGGGTGGTGACGGTGACAGCGGCGGTCCCGCCGACGG
GACTCGGGCGGCAAGGCCGGAGGGCGGCGACGGTGTCGACGCCGTCGCCG
CTACGGCGGTGGCCGTCGCCGCCGTTGACGGTAAGCAGGAGGGTGGCGAT
GATGGTGGTGATGATGAGGTCACCGCCGGCGGTGGAGACGAGCGTGAGAG
AAGCAGCCCGGGGGGTGAGGACCCAGCACGCCCAGCGGCGGCAACGGCCT
GCCGGGCAGCAGCGGCAGCGGCGGCGGCGGCGGTGGGGGGCCGATCGTGG
CTGCTTCCGCCTCAAGTGTGGGCGGCGATCGACAGCGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1784:358..697+

>mRNA_Ecto-sp13_S_contig1784.5422.1 ID=mRNA_Ecto-sp13_S_contig1784.5422.1|Name=mRNA_Ecto-sp13_S_contig1784.5422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1784:358..697+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGTGGAGAAGGGGGTGGTGACGGTGACAGCGGCGGTCCCGCCGACGG
GACTCGGGCGGCAAGGCCGGAGGGCGGCGACGGTGTCGACGCCGTCGCCG
CTACGGCGGTGGCCGTCGCCGCCGTTGACGGTAAGCAGGAGGGTGGCGAT
GATGGTGGTGATGATGAGGTCACCGCCGGCGGTGGAGACGAGCGTGAGAG
AAGCAGCCCGGGGGGTGAGGACCCAGCACGCCCAGCGGCGGCAACGGCCT
GCCGGGCAGCAGCGGCAGCGGCGGCGGCGGCGGTGGGGGGCCGATCGTGG
CTGCTTCCGCCTCAAGTGTGGGCGGCGATCGACAGCGGA
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