mRNA_Ecto-sp13_S_contig17835.5421.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17835.5421.1
Unique NamemRNA_Ecto-sp13_S_contig17835.5421.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17835.5421.1 vs. uniprot
Match: D7FL64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL64_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 2.740e-56
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 1 
Query:    1 HLVCMLAKYLQISLRYQVIYNASRSAVRDNVTGVGVAYPLFRRGVEKERFDRGVYLLGRDVEQMLTARGVPAKRGSGQLLRNLERLMSIDGA 276
            HLVCMLAKYLQISLRYQVIYNASRSAVRDNVTGVGVAYPLFRRGVEKERFDRGVYLLGRDVEQ+LTARGVPAKRG GQLLRNLERLMSIDGA
Sbjct:   45 HLVCMLAKYLQISLRYQVIYNASRSAVRDNVTGVGVAYPLFRRGVEKERFDRGVYLLGRDVEQILTARGVPAKRGGGQLLRNLERLMSIDGA 136
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BLAST of mRNA_Ecto-sp13_S_contig17835.5421.1 vs. uniprot
Match: A0A6H5JMT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT0_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 9.680e-53
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:    1 HLVCMLAKYLQISLRYQVIYNASRSAVRDNVTGVGVAYPLFRRGVEKERFDRGVYLLGRDVEQMLTARGVPAKRGSGQLLRNLERLMSIDGA 276
            HLVCMLAKYLQISLRYQVIYNASRSAVRDNVTGVGVAYPLFRRGVEKERFDRGVYLLGRDVEQMLTARGVPAKRGSGQLLRNLERLMSIDGA
Sbjct:  484 HLVCMLAKYLQISLRYQVIYNASRSAVRDNVTGVGVAYPLFRRGVEKERFDRGVYLLGRDVEQMLTARGVPAKRGSGQLLRNLERLMSIDGA 575
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BLAST of mRNA_Ecto-sp13_S_contig17835.5421.1 vs. uniprot
Match: A0A835Z4V6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4V6_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.380e-20
Identity = 56/95 (58.95%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 HLVCMLAKYLQISLRYQVIYNASRSAVRDNVTGVGVAYPLFRRGVEKERFDRGVYLLGRDVEQMLTARGV--PAKR-----GSGQLLRNLERLMS 264
            HL  +LAKYL ++LRYQ+   ASRSAVRD V G   AYPLFRRG E ERF+RGV LL RDVEQ+L ARG+  PA+      G G LL  L+ LM+
Sbjct:  399 HLTSLLAKYLNVTLRYQLFCGASRSAVRDAVLGTP-AYPLFRRGAETERFERGVALLSRDVEQLLAARGLAHPARAKDCGGGGGALLVALQYLMA 492
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BLAST of mRNA_Ecto-sp13_S_contig17835.5421.1 vs. uniprot
Match: A0A7S3HCI1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCI1_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.190e-17
Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 HLVCMLAKYLQISLRYQVIYNASRSAVRDNVTGVGVAYPLFRRGVEKERFDRGVYLLGRDVEQMLTARGVPAKRGSGQLLRNLERLMSID 270
            HL+ + +KYL+I LRYQ+++ ASRS +RD V G G   PLFRRG E+ERFDR V  L R VEQ+L +RGV  +     +L N+  L S +
Sbjct:  345 HLLLLASKYLEIPLRYQLLFMASRSFIRDPVVGNGTTLPLFRRGTERERFDRAVLWLKRAVEQLLQSRGVTYEPNQ-HILSNIHALFSCE 433
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BLAST of mRNA_Ecto-sp13_S_contig17835.5421.1 vs. uniprot
Match: A0A8K1CIQ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIQ2_PYTOL)

HSP 1 Score: 84.0 bits (206), Expect = 6.720e-17
Identity = 42/92 (45.65%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:    1 HLVCMLAKYLQISLRYQVIYNASRSAVRDNVTGVGVAYPLFRRGVEKERFDRGVYLLGRDVEQMLTARGVPAKRGSGQLLRNLERLMSIDGA 276
            HLV ML+KYLQ++LRY+V+  +SRS ++D +      YPL+R+GVEKERF+R ++ L +DVEQ+L ARG+   +G+  +L  L+ L   + +
Sbjct:  424 HLVFMLSKYLQVNLRYRVMPYSSRSFIKDEINDPLGEYPLYRKGVEKERFERAIFFLKKDVEQLLFARGLDPTQGA-PILGRLKALTDAESS 514
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BLAST of mRNA_Ecto-sp13_S_contig17835.5421.1 vs. uniprot
Match: A0A067BJN6_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BJN6_SAPPC)

HSP 1 Score: 82.8 bits (203), Expect = 1.040e-16
Identity = 42/92 (45.65%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:    1 HLVCMLAKYLQISLRYQVIYNASRSAVRDNVTGVGVAYPLFRRGVEKERFDRGVYLLGRDVEQMLTARGVPAKRGSGQLLRNLERLMSIDGA 276
            H V MLAKYL ++LRY +++ +SRS +RD+V    + YPLF+RGVEK+RF++    L +DVEQ++ ARG+     S QLL  L+ ++  + A
Sbjct:  260 HFVFMLAKYLDVNLRYTIVHCSSRSFMRDDVNDPNIEYPLFKRGVEKDRFEKACVFLKKDVEQLMQARGLEIVVNS-QLLIRLKSIVDAEVA 350
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BLAST of mRNA_Ecto-sp13_S_contig17835.5421.1 vs. uniprot
Match: A0A1V9ZA74_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZA74_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.250e-16
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:    1 HLVCMLAKYLQISLRYQVIYNASRSAVRDNVTGVGVAYPLFRRGVEKERFDRGVYLLGRDVEQMLTARGVPAKRGSGQLLRNLERLMSIDGA 276
            H V MLAKYL ++LRY +++ +SRS +RD+V    V YPLF+RGVEK+RF++    L +DVEQ+L ARG+     S QLL  L+ L+  + A
Sbjct:  424 HFVFMLAKYLDVNLRYTIVHWSSRSFMRDDVNDPYVEYPLFKRGVEKDRFEKACVFLKKDVEQLLQARGLDIVVNS-QLLVRLKSLVDAEMA 514
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BLAST of mRNA_Ecto-sp13_S_contig17835.5421.1 vs. uniprot
Match: A0A485KM71_9STRA (Aste57867_9033 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KM71_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.320e-16
Identity = 42/90 (46.67%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:    1 HLVCMLAKYLQISLRYQVIYNASRSAVRDNVTGVGVAYPLFRRGVEKERFDRGVYLLGRDVEQMLTARGVPAKRGSGQLLRNLERLMSID 270
            H V +LAKYL ++LRY +++ +SRS +RD+V      YPL+RRGV+KERF++    L +DVEQ+L+ARG+   +  GQLL  L  L+  +
Sbjct:  420 HFVFLLAKYLNVNLRYAIVHLSSRSYMRDDVNDPHGEYPLYRRGVDKERFEKAFLFLKKDVEQLLSARGLDPGQ-QGQLLMRLTSLVESE 508
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BLAST of mRNA_Ecto-sp13_S_contig17835.5421.1 vs. uniprot
Match: T0QE35_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QE35_SAPDV)

HSP 1 Score: 82.4 bits (202), Expect = 2.330e-16
Identity = 43/92 (46.74%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:    1 HLVCMLAKYLQISLRYQVIYNASRSAVRDNVTGVGVAYPLFRRGVEKERFDRGVYLLGRDVEQMLTARGVPAKRGSGQLLRNLERLMSIDGA 276
            H V MLAKYL ++LRY +++ +SRS +RD+V    + YPLF+RGVEK+RF++    L +DVEQ+L ARG+     S QLL  L+ ++  + A
Sbjct:  420 HFVFMLAKYLDVNLRYTIVHCSSRSFMRDDVNDPYIEYPLFKRGVEKDRFEKACVFLKKDVEQLLQARGLEIVVNS-QLLIRLKSIVDAEVA 510
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BLAST of mRNA_Ecto-sp13_S_contig17835.5421.1 vs. uniprot
Match: A0A7R9U751_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U751_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.340e-16
Identity = 46/89 (51.69%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    1 HLVCMLAKYLQISLRYQVIYNASRSAVRDNV---TGVGVAYPLFRRGVEKERFDRGVYLLGRDVEQMLTARGVPAKRGSGQLLRNLERL 258
            HLV ML+KYL + LRYQ++Y +SRSA+RD V         Y LFRRGVE+ERF+  V +L ++VEQ+L AR VP    S  +L NL  L
Sbjct:  431 HLVLMLSKYLAVPLRYQILYYSSRSAIRDEVRDGANASTTYCLFRRGVERERFELAVMMLQKNVEQLLAARDVPFD-SSLSILPNLHNL 518
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17835.5421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL64_ECTSI2.740e-5697.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMT0_9PHAE9.680e-53100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z4V6_9STRA1.380e-2058.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3HCI1_9STRA1.190e-1750.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A8K1CIQ2_PYTOL6.720e-1745.65Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067BJN6_SAPPC1.040e-1645.65Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A1V9ZA74_9STRA1.250e-1648.91Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A485KM71_9STRA2.320e-1646.67Aste57867_9033 protein n=1 Tax=Aphanomyces stellat... [more]
T0QE35_SAPDV2.330e-1646.74Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A7R9U751_9STRA2.340e-1651.69Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17835contigEcto-sp13_S_contig17835:3020..3601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score171.4
Seed ortholog evalue1.9e-40
Seed eggNOG ortholog2880.D7FL64
Preferred nameUVRAG
Model size279
KEGG koko:K01384,ko:K21249
KEGG Pathwayko04140,ko04150,ko04310,ko04390,ko04550,ko04916,ko04934,ko05165,ko05166,ko05200,ko05205,ko05217,ko05224,ko05225,ko05226,map04140,map04150,map04310,map04390,map04550,map04916,map04934,map05165,map05166,map05200,map05205,map05217,map05224,map05225,map05226
KEGG ModuleM00677
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000149,GO:0000226,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000726,GO:0001932,GO:0002009,GO:0002165,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005813,GO:0005815,GO:0005856,GO:0005942,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006725,GO:0006807,GO:0006810,GO:0006890,GO:0006906,GO:0006914,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007034,GO:0007049,GO:0007051,GO:0007059,GO:0007098,GO:0007275,GO:0007399,GO:0007444,GO:0007483,GO:0007484,GO:0007485,GO:0007548,GO:0007552,GO:0007560,GO:0008150,GO:0008152,GO:0008285,GO:0008593,GO:0009056,GO:0009057,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010506,GO:0010508,GO:0010564,GO:0010638,GO:0010646,GO:0010648,GO:0012505,GO:0015630,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016239,GO:0016241,GO:0016322,GO:0017124,GO:0019058,GO:0019220,GO:0019222,GO:0019898,GO:0019904,GO:0021700,GO:0022008,GO:0022402,GO:0022414,GO:0022607,GO:0023051,GO:0023057,GO:0030100,GO:0030139,GO:0030154,GO:0030182,GO:0030260,GO:0030496,GO:0030539,GO:0031023,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031399,GO:0031410,GO:0031982,GO:0032268,GO:0032465,GO:0032501,GO:0032502,GO:0032535,GO:0032801,GO:0032879,GO:0032991,GO:0033043,GO:0033554,GO:0034622,GO:0034641,GO:0035112,GO:0035126,GO:0035215,GO:0035239,GO:0035295,GO:0035493,GO:0042127,GO:0042325,GO:0042551,GO:0043112,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043243,GO:0043244,GO:0043549,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044403,GO:0044409,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045324,GO:0045335,GO:0045746,GO:0045807,GO:0045859,GO:0046483,GO:0046661,GO:0046718,GO:0046907,GO:0048193,GO:0048259,GO:0048260,GO:0048284,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048585,GO:0048608,GO:0048666,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048803,GO:0048805,GO:0048806,GO:0048808,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051036,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051174,GO:0051179,GO:0051234,GO:0051235,GO:0051246,GO:0051302,GO:0051338,GO:0051640,GO:0051641,GO:0051645,GO:0051649,GO:0051651,GO:0051657,GO:0051684,GO:0051701,GO:0051704,GO:0051716,GO:0051726,GO:0051806,GO:0051828,GO:0060255,GO:0060429,GO:0060562,GO:0060627,GO:0061024,GO:0061025,GO:0061458,GO:0061695,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0071695,GO:0071704,GO:0071840,GO:0071900,GO:0071985,GO:0080090,GO:0090066,GO:0090174,GO:0090304,GO:0090598,GO:0097680,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098852,GO:1901096,GO:1901098,GO:1901360,GO:1901575,GO:1902494,GO:1990234
Exons2
EggNOG free text desc.SNARE complex assembly
EggNOG OGsKOG2896@1,KOG2896@2759
Cds size267
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462924.0172536-CDS-Ecto-sp13_S_contig17835:3019..32271681462924.0172536-CDS-Ecto-sp13_S_contig17835:3019..3227Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17835 3020..3227 -
1681462924.029089-CDS-Ecto-sp13_S_contig17835:3530..35891681462924.029089-CDS-Ecto-sp13_S_contig17835:3530..3589Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17835 3531..3589 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462924.0378048-UTR-Ecto-sp13_S_contig17835:3589..36011681462924.0378048-UTR-Ecto-sp13_S_contig17835:3589..3601Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17835 3590..3601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17835.5421.1prot_Ecto-sp13_S_contig17835.5421.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17835 3020..3589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17835.5421.1

>prot_Ecto-sp13_S_contig17835.5421.1 ID=prot_Ecto-sp13_S_contig17835.5421.1|Name=mRNA_Ecto-sp13_S_contig17835.5421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MLAKYLQISLRYQVIYNASRSAVRDNVTGVGVAYPLFRRGVEKERFDRGV
YLLGRDVEQMLTARGVPAKRGSGQLLRNLERLMSIDGA*
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mRNA from alignment at Ecto-sp13_S_contig17835:3020..3601-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17835.5421.1 ID=mRNA_Ecto-sp13_S_contig17835.5421.1|Name=mRNA_Ecto-sp13_S_contig17835.5421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17835:3020..3601- (Ectocarpus species13 EcNAP12_S_4_19m)
CACCTGGTCTGCATGCTTGCCAAGTACCTCCAGATTTCTCTGCGGTATCA
AGTCATCTACAATGCATCGAGGTATGTACGCGATGAGGTGTGTTTGAGAC
GGCCCGCGGCCAAACGCCGCCGCAGCCCTGAGTATGGAATGTCTTCAGGA
CTTCAGGATGATATTCTGAAAACGTAACCACTTTCGTTGTGCCAATGGAC
TACGTAGAAGCATTGCGGCATCAAGCACACGTGTACAGCTTGAAAAAGAG
GCAGACTACAACCTGCGGCAGGAGGTGGTCAGAAATGCGAACGAGGGAGC
GTCTAGTTTGGCGTCACAACAACAACAACAGTCCGAGCCCCCCCGCGCGG
TGGTTGTCATACTGGCACCGGCAGGTCTGCCGTCCGAGACAACGTCACCG
GGGTTGGCGTAGCCTACCCGCTGTTCAGGCGAGGGGTAGAGAAGGAGAGG
TTTGACCGCGGCGTGTATCTGCTCGGGCGAGACGTGGAGCAGATGTTGAC
GGCCAGAGGGGTGCCGGCGAAGAGAGGCAGCGGCCAACTGCTGCGAAACC
TGGAGCGCCTCATGTCGATCGACGGAGCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17835:3020..3601-

>mRNA_Ecto-sp13_S_contig17835.5421.1 ID=mRNA_Ecto-sp13_S_contig17835.5421.1|Name=mRNA_Ecto-sp13_S_contig17835.5421.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17835:3020..3601- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGCCAAGTACCTCCAGATTTCTCTGCGGTATCAAGTCATCTACAA
TGCATCGAGGTCTGCCGTCCGAGACAACGTCACCGGGGTTGGCGTAGCCT
ACCCGCTGTTCAGGCGAGGGGTAGAGAAGGAGAGGTTTGACCGCGGCGTG
TATCTGCTCGGGCGAGACGTGGAGCAGATGTTGACGGCCAGAGGGGTGCC
GGCGAAGAGAGGCAGCGGCCAACTGCTGCGAAACCTGGAGCGCCTCATGT
CGATCGACGGAGCGTAG
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