mRNA_Ecto-sp13_S_contig17834.5420.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17834.5420.1
Unique NamemRNA_Ecto-sp13_S_contig17834.5420.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17834.5420.1 vs. uniprot
Match: A0A6H5KZC5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZC5_9PHAE)

HSP 1 Score: 259 bits (661), Expect = 4.020e-80
Identity = 137/179 (76.54%), Postives = 142/179 (79.33%), Query Frame = 1 
Query:    1 PFSNPTTLPPPKVLLCMAEQVGKLTAHIGGKQHAHELLVPLEQLASVEESTVRDKALESIQTVARCLSPEQLTDHMVPLLSRLTLKEWFTARMSACCLAPPTYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARAEVREMFKKLCTDDTPMVRRVAAHNLGPLAREVETELVTKDLL 537
            PF N +T    +VLLCMAEQVGKLT H+GGKQHAHELLVPLEQLASVEESTVR+KALESIQTVARCLSPEQLTDHMVPLLSRLTLKEWFTARMSACCLAPPTYA                             AARAEVREMFKKLCTDDTPMVRRVAAHNLG LA+EVETELVTKDLL
Sbjct:   77 PFVNDSTDDEDEVLLCMAEQVGKLTVHLGGKQHAHELLVPLEQLASVEESTVREKALESIQTVARCLSPEQLTDHMVPLLSRLTLKEWFTARMSACCLAPPTYALLLQLLPPTGPAAATLPEKDAVAGGGAGAAARAEVREMFKKLCTDDTPMVRRVAAHNLGLLAKEVETELVTKDLL 255
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17834.5420.1 vs. uniprot
Match: A0A6V7KNC7_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7KNC7_9HYME)

HSP 1 Score: 129 bits (324), Expect = 1.670e-34
Identity = 75/183 (40.98%), Postives = 98/183 (53.55%), Query Frame = 1 
Query:    1 PFSNPTTLPPPKVLLCMAEQVGKLTAHIGGKQHAHELLVPLEQLASVEESTVRDKALESIQTVARCLSPEQLTDHMVPLLSRLTLKEWFTARMSACCLAPPTYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARAEVREMFKKLCTDDTPMVRRVAAHNLGPLAREVETELVTKDLLELFI 549
            PF   T     +VLL +AEQ+G  T  +GG +H H LL PLE LA+VEE+ VRDKA+ES++ VA   +P  L DH VPL+ RL   +WFT+R SAC L    Y                                + ++R  F+ LC DDTPMVRR AA  LG  A+ VE E +  DL+ +F+
Sbjct:   27 PFLTETIYDEDEVLLALAEQLGAFTPLVGGPEHVHCLLPPLEALAAVEETVVRDKAVESLRNVAGQHTPAYLEDHFVPLVQRLASGDWFTSRTSACGLISVCYPRVSP-------------------------TTKVDLRNHFRNLCQDDTPMVRRSAASKLGEFAKVVEIEYLKTDLIPMFV 184
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17834.5420.1 vs. uniprot
Match: UPI000C77CB8D (serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like isoform X1 n=2 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C77CB8D)

HSP 1 Score: 135 bits (340), Expect = 7.690e-34
Identity = 79/184 (42.93%), Postives = 105/184 (57.07%), Query Frame = 1 
Query:    1 PFSNPTTLPPPKVLLCMAEQVGKLTAHIGGKQHAHELLVPLEQLASVEESTVRDKALESIQTVARCLSPEQLTDHMVPLLSRLTLKEWFTARMSACCLAPPTYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARAEVREMFKKLCT-DDTPMVRRVAAHNLGPLAREVETELVTKDLLELFI 549
            PF   T     +VLL +AEQ+G  T  +GGK+H H LL PLE LA+VEE+ VRDKA++S++T+A   SP+ L DH VPL+ RL+  +WFT+R SAC L    YA                               +AE+R MF+ LC  DDTPMVRR A+  LG  A+ VE + +  DL+ LF+
Sbjct:   53 PFLTDTIYDEDEVLLALAEQLGTFTPLVGGKEHVHCLLPPLESLATVEETIVRDKAVDSLRTIAEEHSPQDLEDHFVPLVKRLSGGDWFTSRTSACGLYACCYARVSS-------------------------GVKAELRTMFRNLCQQDDTPMVRRAASGKLGEFAKVVEVDYLKSDLVPLFV 211
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17834.5420.1 vs. uniprot
Match: A0A4C1UKI8_EUMVA (Uncharacterized protein n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1UKI8_EUMVA)

HSP 1 Score: 131 bits (330), Expect = 7.760e-34
Identity = 79/183 (43.17%), Postives = 99/183 (54.10%), Query Frame = 1 
Query:    1 PFSNPTTLPPPKVLLCMAEQVGKLTAHIGGKQHAHELLVPLEQLASVEESTVRDKALESIQTVARCLSPEQLTDHMVPLLSRLTLKEWFTARMSACCLAPPTYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARAEVREMFKKLCTDDTPMVRRVAAHNLGPLAREVETELVTKDLLELFI 549
            PF   T     +VLL +AEQ+G     +GG + AH LL PLE LA+VEE+ VRDKA+ S++ VA   SP  L  H VPL+ RL   +WFT+R SAC L    YA                               RAE+R+ F+ LC DDTPMVRR AA+ LG  AR VE E V  DL+ +F+
Sbjct:   55 PFLTETIYDEDEVLLALAEQLGNFIQLVGGGEWAHCLLPPLESLATVEETVVRDKAVASLRAVAAHHSPAALEQHFVPLVQRLAGGDWFTSRASACGLFSVCYARVSAP-------------------------VRAELRQHFRALCQDDTPMVRRAAAYKLGEFARVVEVEYVKSDLIPMFV 212
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17834.5420.1 vs. uniprot
Match: A0A6J8AYB3_MYTCO (PPP2R1 n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8AYB3_MYTCO)

HSP 1 Score: 134 bits (336), Expect = 2.850e-33
Identity = 76/182 (41.76%), Postives = 104/182 (57.14%), Query Frame = 1 
Query:    1 PFSNPTTLPPPKVLLCMAEQVGKLTAHIGGKQHAHELLVPLEQLASVEESTVRDKALESIQTVARCLSPEQLTDHMVPLLSRLTLKEWFTARMSACCLAPPTYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARAEVREMFKKLCTDDTPMVRRVAAHNLGPLAREVETELVTKDLLELF 546
            PF   T     +VLL +AEQ+G+LT  +GG ++ H LL PLE LA+VEE+ VRDKA+ES++T+A   SP  L +H VPL+ RL+  +WFT+R SAC L    Y                              + +AE+R+ F+ LC DDTPM RR AA  LG  A+ VE +++  DL+ LF
Sbjct:   54 PFLTDTIYDEDEVLLALAEQLGQLTPLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRTIAALHSPADLENHFVPLVKRLSGGDWFTSRTSACGLFSVCYPRVSN-------------------------SVKAELRQHFRNLCGDDTPMARRAAAGKLGEFAKAVELDILKSDLIPLF 210
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17834.5420.1 vs. uniprot
Match: A0A6M2DN45_9NEOP (Protein phosphatase 2a regulatory subunit a n=5 Tax=Pulicidae TaxID=7511 RepID=A0A6M2DN45_9NEOP)

HSP 1 Score: 133 bits (335), Expect = 4.240e-33
Identity = 77/183 (42.08%), Postives = 101/183 (55.19%), Query Frame = 1 
Query:    1 PFSNPTTLPPPKVLLCMAEQVGKLTAHIGGKQHAHELLVPLEQLASVEESTVRDKALESIQTVARCLSPEQLTDHMVPLLSRLTLKEWFTARMSACCLAPPTYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARAEVREMFKKLCTDDTPMVRRVAAHNLGPLAREVETELVTKDLLELFI 549
            PF   T     +VLL +AEQ+G   + +GG +HAH LL PLE LA+VEE+ VRDKA+ES++ VA+  SP+ L  H VPLL RL   +WFT+R SAC L    Y                                + ++R  F+ LC DDTPMVRR AA  LG LA+ VE E +  DL+ +F+
Sbjct:   54 PFLTETIYDEDEVLLALAEQLGNFISLVGGPEHAHCLLPPLESLATVEETVVRDKAVESLRAVAQQHSPQDLEAHFVPLLQRLASGDWFTSRTSACGLFSVCYPRVSS-------------------------TVKNDLRSNFRSLCQDDTPMVRRAAASKLGELAKVVELEYLKSDLIPMFV 211
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17834.5420.1 vs. uniprot
Match: A0A126SNQ2_9ARAC (Protein phosphatase 2A regulatory subunit (Fragment) n=39 Tax=Phalangodidae TaxID=43292 RepID=A0A126SNQ2_9ARAC)

HSP 1 Score: 125 bits (314), Expect = 7.790e-33
Identity = 72/182 (39.56%), Postives = 97/182 (53.30%), Query Frame = 1 
Query:    1 PFSNPTTLPPPKVLLCMAEQVGKLTAHIGGKQHAHELLVPLEQLASVEESTVRDKALESIQTVARCLSPEQLTDHMVPLLSRLTLKEWFTARMSACCLAPPTYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARAEVREMFKKLCTDDTPMVRRVAAHNLGPLAREVETELVTKDLLELF 546
            PF   T     +VLL +AEQ+G  T  +GG ++ H LL PLE LA+VEE+ VRDKA+ES++ +++  SP  L  H VPL+ RL   +WFT+R SAC L    Y                                R E+R  F+ LC DDTPMVRR AA  LG  A+ VE + +  DL+ ++
Sbjct:   45 PFLTDTIYDEDEVLLALAEQLGNFTPLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRNISQQHSPGDLEQHFVPLVKRLASGDWFTSRTSACGLFSVCYPRVGS-------------------------TVRVELRNHFRNLCQDDTPMVRRAAASKLGEFAKIVELDCIKSDLIPMW 201
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17834.5420.1 vs. uniprot
Match: A0A2R7W5S4_ONCFA (Uncharacterized protein n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7W5S4_ONCFA)

HSP 1 Score: 126 bits (317), Expect = 1.530e-32
Identity = 72/183 (39.34%), Postives = 103/183 (56.28%), Query Frame = 1 
Query:    1 PFSNPTTLPPPKVLLCMAEQVGKLTAHIGGKQHAHELLVPLEQLASVEESTVRDKALESIQTVARCLSPEQLTDHMVPLLSRLTLKEWFTARMSACCLAPPTYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARAEVREMFKKLCTDDTPMVRRVAAHNLGPLAREVETELVTKDLLELFI 549
            PF   T     +VLL +AEQ+G+ T+ +GG ++ H LL PLE LA+VEE+ VRDKA+ES++ ++   SP+ L    VPL++RL+  +WFT+R SAC L    Y                              + +A++R  F+ LC DDTPMVRR AA  LG  A+ VE E +  DL+ +F+
Sbjct:   29 PFLTDTIYDEDEVLLALAEQLGQFTSLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRHISSQHSPQDLETRFVPLVTRLSSGDWFTSRTSACGLFSVCYGRVNS-------------------------SVKADLRTHFRNLCQDDTPMVRRAAASKLGEFAKVVELEYLKLDLIPMFV 186
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17834.5420.1 vs. uniprot
Match: A0A5B7EKP9_PORTR (Serine/threonine-protein phosphatase 2A regulatory subunit A alpha isoform n=3 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7EKP9_PORTR)

HSP 1 Score: 132 bits (331), Expect = 1.640e-32
Identity = 76/183 (41.53%), Postives = 100/183 (54.64%), Query Frame = 1 
Query:    1 PFSNPTTLPPPKVLLCMAEQVGKLTAHIGGKQHAHELLVPLEQLASVEESTVRDKALESIQTVARCLSPEQLTDHMVPLLSRLTLKEWFTARMSACCLAPPTYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARAEVREMFKKLCTDDTPMVRRVAAHNLGPLAREVETELVTKDLLELFI 549
            PF   T     +VLL +AEQ+G  T  +GG ++ H LL PLE LA+VEE+ VRDKA+ES++ V    SPE L  H +PL+ RL + +WFT+R SAC L    Y                              A +AE+R  F+ LC DDTPMVRR AA  LG  A+ VE E +  DL+ +F+
Sbjct:   55 PFLTDTIYDEDEVLLALAEQLGAFTPLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRKVCEEHSPEHLETHFLPLVKRLAVGDWFTSRTSACGLFSVAYPRLSV-------------------------ATKAELRSHFRSLCQDDTPMVRRAAAGKLGEFAKVVEVEYLKTDLIPMFV 212
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17834.5420.1 vs. uniprot
Match: A0A2G9QLY7_LITCT (Uncharacterized protein (Fragment) n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9QLY7_LITCT)

HSP 1 Score: 126 bits (317), Expect = 1.840e-32
Identity = 72/182 (39.56%), Postives = 100/182 (54.95%), Query Frame = 1 
Query:    1 PFSNPTTLPPPKVLLCMAEQVGKLTAHIGGKQHAHELLVPLEQLASVEESTVRDKALESIQTVARCLSPEQLTDHMVPLLSRLTLKEWFTARMSACCLAPPTYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARAEVREMFKKLCTDDTPMVRRVAAHNLGPLAREVETELVTKDLLELF 546
            PF   T     +VLL +AEQ+G  T+ +GG ++ H LL PLE LA+VEE+ VRD+A+ES++ ++   SP  L  H VPLL RL   +WFT+R SAC L    Y                                +AE+R+ F+ LC+DDTPMVRR AA  LG  A+ +E E V  +++ +F
Sbjct:   55 PFLTDTIYDEDEVLLALAEQLGTFTSLVGGPEYVHCLLPPLESLATVEETVVRDRAVESLRAISHEHSPADLEAHFVPLLKRLASGDWFTSRTSACGLFSVCYPRVSS-------------------------TIKAELRQHFRNLCSDDTPMVRRAAASKLGEFAKVLELEYVKSEIIPMF 211
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17834.5420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZC5_9PHAE4.020e-8076.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V7KNC7_9HYME1.670e-3440.98Uncharacterized protein (Fragment) n=1 Tax=Bracon ... [more]
UPI000C77CB8D7.690e-3442.93serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
A0A4C1UKI8_EUMVA7.760e-3443.17Uncharacterized protein n=1 Tax=Eumeta variegata T... [more]
A0A6J8AYB3_MYTCO2.850e-3341.76PPP2R1 n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8AYB3... [more]
A0A6M2DN45_9NEOP4.240e-3342.08Protein phosphatase 2a regulatory subunit a n=5 Ta... [more]
A0A126SNQ2_9ARAC7.790e-3339.56Protein phosphatase 2A regulatory subunit (Fragmen... [more]
A0A2R7W5S4_ONCFA1.530e-3239.34Uncharacterized protein n=1 Tax=Oncopeltus fasciat... [more]
A0A5B7EKP9_PORTR1.640e-3241.53Serine/threonine-protein phosphatase 2A regulatory... [more]
A0A2G9QLY7_LITCT1.840e-3239.56Uncharacterized protein (Fragment) n=1 Tax=Lithoba... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17834contigEcto-sp13_S_contig17834:1383..3389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score247.3
Seed ortholog evalue5.6e-63
Seed eggNOG ortholog2880.D8LTZ8
Preferred namePPP2R1B
Model size549
KEGG koko:K03456
KEGG Pathwayko03015,ko04071,ko04111,ko04113,ko04114,ko04151,ko04152,ko04261,ko04350,ko04390,ko04391,ko04530,ko04728,ko04730,ko05142,ko05160,ko05165,map03015,map04071,map04111,map04113,map04114,map04151,map04152,map04261,map04350,map04390,map04391,map04530,map04728,map04730,map05142,map05160,map05165
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000086,GO:0000159,GO:0000184,GO:0000188,GO:0000212,GO:0000226,GO:0000278,GO:0000280,GO:0000775,GO:0000819,GO:0000910,GO:0000956,GO:0001558,GO:0001932,GO:0001933,GO:0003674,GO:0003823,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005694,GO:0005737,GO:0005739,GO:0005813,GO:0005814,GO:0005815,GO:0005816,GO:0005819,GO:0005826,GO:0005829,GO:0005856,GO:0005938,GO:0006139,GO:0006275,GO:0006355,GO:0006396,GO:0006401,GO:0006402,GO:0006464,GO:0006469,GO:0006470,GO:0006629,GO:0006643,GO:0006665,GO:0006672,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006914,GO:0006915,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007059,GO:0007062,GO:0007088,GO:0007096,GO:0007098,GO:0007099,GO:0007135,GO:0007143,GO:0007154,GO:0007163,GO:0007165,GO:0007275,GO:0007276,GO:0007292,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008287,GO:0008380,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009792,GO:0009889,GO:0009892,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010389,GO:0010467,GO:0010468,GO:0010556,GO:0010563,GO:0010564,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0010648,GO:0010921,GO:0010941,GO:0010942,GO:0010948,GO:0010974,GO:0012501,GO:0012505,GO:0015629,GO:0015630,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017151,GO:0019208,GO:0019219,GO:0019220,GO:0019222,GO:0019439,GO:0019538,GO:0019888,GO:0019899,GO:0019932,GO:0019953,GO:0022402,GO:0022406,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030111,GO:0030155,GO:0030234,GO:0030308,GO:0030863,GO:0030864,GO:0030952,GO:0031023,GO:0031029,GO:0031030,GO:0031033,GO:0031034,GO:0031323,GO:0031324,GO:0031326,GO:0031399,GO:0031400,GO:0031967,GO:0031975,GO:0031991,GO:0032045,GO:0032153,GO:0032155,GO:0032268,GO:0032269,GO:0032465,GO:0032466,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032954,GO:0032955,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0033673,GO:0034613,GO:0034622,GO:0034641,GO:0034655,GO:0035303,GO:0035304,GO:0035330,GO:0035331,GO:0035556,GO:0035770,GO:0036211,GO:0036464,GO:0040008,GO:0042221,GO:0042325,GO:0042326,GO:0042509,GO:0042532,GO:0042578,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043412,GO:0043549,GO:0043603,GO:0043666,GO:0043900,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044380,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044464,GO:0044703,GO:0044732,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0045121,GO:0045132,GO:0045144,GO:0045495,GO:0045595,GO:0045786,GO:0045859,GO:0045926,GO:0045930,GO:0045936,GO:0046425,GO:0046426,GO:0046483,GO:0046578,GO:0046580,GO:0046626,GO:0046627,GO:0046700,GO:0046982,GO:0046983,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0048856,GO:0050730,GO:0050732,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051056,GO:0051058,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051174,GO:0051177,GO:0051179,GO:0051225,GO:0051231,GO:0051232,GO:0051239,GO:0051246,GO:0051248,GO:0051252,GO:0051276,GO:0051298,GO:0051301,GO:0051302,GO:0051304,GO:0051306,GO:0051321,GO:0051336,GO:0051338,GO:0051348,GO:0051445,GO:0051493,GO:0051640,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0051754,GO:0051782,GO:0051783,GO:0060255,GO:0060271,GO:0060281,GO:0060284,GO:0060293,GO:0060561,GO:0061492,GO:0061509,GO:0061919,GO:0061983,GO:0065003,GO:0065007,GO:0065009,GO:0070192,GO:0070262,GO:0070601,GO:0070727,GO:0070925,GO:0070938,GO:0071704,GO:0071840,GO:0071900,GO:0071901,GO:0071944,GO:0071988,GO:0072686,GO:0072698,GO:0080090,GO:0090304,GO:0090443,GO:0097711,GO:0098534,GO:0098589,GO:0098687,GO:0098772,GO:0098805,GO:0098813,GO:0098857,GO:0099568,GO:0110020,GO:0120031,GO:0120036,GO:0140013,GO:0140014,GO:0140056,GO:0140096,GO:1900076,GO:1900077,GO:1900193,GO:1901360,GO:1901361,GO:1901564,GO:1901575,GO:1901891,GO:1901892,GO:1901987,GO:1901990,GO:1902412,GO:1902413,GO:1902440,GO:1902494,GO:1902531,GO:1902532,GO:1902742,GO:1902749,GO:1903046,GO:1903047,GO:1903293,GO:1903429,GO:1903436,GO:1903437,GO:1903506,GO:1903538,GO:1904892,GO:1904893,GO:1905508,GO:1905742,GO:1905879,GO:1990405,GO:1990904,GO:2000112,GO:2000241,GO:2001141,GO:2001233,GO:2001235,GO:2001236,GO:2001238,GO:2001239,GO:2001241
Exons3
EggNOG free text desc.meiotic spindle elongation
EggNOG OGsKOG0211@1,KOG0211@2759
Ec32 ortholog descriptionProtein phosphatase 2A regulatory subunit A
Ec32 orthologEc-12_003710.1
Cds size549
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462923.9582188-CDS-Ecto-sp13_S_contig17834:1382..14641681462923.9582188-CDS-Ecto-sp13_S_contig17834:1382..1464Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17834 1383..1464 -
1681462923.9713733-CDS-Ecto-sp13_S_contig17834:2214..25281681462923.9713733-CDS-Ecto-sp13_S_contig17834:2214..2528Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17834 2215..2528 -
1681462923.9820528-CDS-Ecto-sp13_S_contig17834:3236..33891681462923.9820528-CDS-Ecto-sp13_S_contig17834:3236..3389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17834 3237..3389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17834.5420.1prot_Ecto-sp13_S_contig17834.5420.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17834 1383..3389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17834.5420.1

>prot_Ecto-sp13_S_contig17834.5420.1 ID=prot_Ecto-sp13_S_contig17834.5420.1|Name=mRNA_Ecto-sp13_S_contig17834.5420.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
PFSNPTTLPPPKVLLCMAEQVGKLTAHIGGKQHAHELLVPLEQLASVEES
TVRDKALESIQTVARCLSPEQLTDHMVPLLSRLTLKEWFTARMSACCLAP
PTYALLLQLLPPTAPAASTLPEKDAAAGGGAGAAARAEVREMFKKLCTDD
TPMVRRVAAHNLGPLAREVETELVTKDLLELFI
back to top

mRNA from alignment at Ecto-sp13_S_contig17834:1383..3389-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17834.5420.1 ID=mRNA_Ecto-sp13_S_contig17834.5420.1|Name=mRNA_Ecto-sp13_S_contig17834.5420.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2007bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17834:1383..3389- (Ectocarpus species13 EcNAP12_S_4_19m)
CCATTTAGCAACCCCACGACGCTCCCTCCCCCGAAGGTGTTGCTCTGCAT
GGCGGAGCAGGTGGGGAAGCTAACTGCGCACATAGGAGGAAAGCAGCACG
CGCATGAGCTCTTGGTGCCCTTGGAGCAGCTGGCGTCCGTGGAGGAAAGC
ACGGTGAGTCAATTGCACGTTTCGACCCGATTTGTGCTTTTGTTATTGTC
ATCGTCCATTGCGGCAACAGTTGATTTGTATCTACTACGTGCACTTGTAT
TTTGATGTTTTTTTTTGTTATTAATGGGCCCATTTTCGATGCATTCACAG
AGGATGCTGTGCTCTCATCGTTTCGTAGTGCGCGCCCGCGCTTGTCTTCC
GTACCTTCCGTACCCTGCCTGGCCACTGTTCGTCACCGTATGCGGCTGGT
CAGTGTACACGTTCATCGGTAGACCAACGCTCGTTGTGGGTGCGATTTCG
AGCTGTTATTCATGCACTGGTTGTGGGCAATGCCGTTCAAGCCGGGGGTC
TCCTGAGTATACATCGGCCGTTTTTTTTCGTTTTTTGTCATGTTTTGGCC
AGCTCGCTCGGTGTTTTCGTGTTTGCTTTACCACCGTGGAGGTACAGCTA
CTCCAGCTCTTGTGTCGCACATCCAACTGATATCGGCGGCCTTCCGGCAG
CCTCCTGCTAACCACCGGCTATTTCATGGACCTGCCACTGTGAAGGGATG
TAGTGGCCGCGCATGCGTTGTCGTTGGAAACATTCTGCCGCCGTCGTCTT
CTAGCACTCTCTCGCGCTGCGATCCCTTGTTTTCGCTTTCCCCGACACAC
GACTACTGCTGTAACTTTTGCGCAATCGGTTGTTCCGTCTCTTGTCTCTG
AAAATCCGTAGGTCCGAGACAAGGCGTTGGAGTCGATCCAGACGGTGGCT
CGCTGCCTGTCGCCGGAGCAGCTGACGGACCACATGGTGCCCCTCCTCTC
CAGGCTCACGCTCAAGGAGTGGTTCACGGCCCGCATGTCGGCGTGCTGCC
TCGCGCCGCCGACCTACGCGCTGCTGCTGCAGCTTCTACCGCCCACGGCG
CCTGCCGCGTCGACGCTCCCGGAGAAGGACGCGGCGGCGGGGGGCGGGGC
GGGAGCGGCGGCGCGGGCGGAGGTGCGGGAGATGTTCAAGAAACTCTGTA
CGGACGACACTCCCATGGTCCGAAGGTGTGGTTACGCGGACGCACGGTAG
GGACATGGCATCGATCAACCAAAAGGGGGAGGGGAATGGTTGTTGTGGAG
GGTGACGCGAGGAGCTCACCGGTTTGCTAGACAGGCTTTGAACGGCAGTC
TGCTCTTGGGGAGCTGTTTTGGGTGGGATGCTAGCAGTGTTGTCCGTAGC
CTGTTGCTTGGAAGAAGGTTGTGAAATTGCCCCAGCTTTGTCCTCATGTG
ATGGCAACTGTTGCACACCGCTGTAGTGGTGGAGGGGGTTGAGTGCCCAC
CGCCTGGCGACCTCTTCTAGCTCGAAGAAGTGCTTGGGGGGCGTAGAACG
ATTCCGCGAACGTACCTTTGAAAATCCATCCAGCCAGTTTTGACGCGTGT
GTGTGTTTCGTGAGCGAGGGTGCGTGTTGGAACGGTGACTCAAAGCTCAT
GGTCCCACGAAGGTATAGCACGTGGTGCGTGTTCGAGTGCTTGCGTCTGA
GTACGATGTACTGGGCCGACGACTAAGCACTTTCGTCGGCACAGCCTGCC
AGGGCACACAATGTTTGGTCCAGAGGTCGACGCCGTGGCAGTTTGTCGAT
CTATTCTTATCTTGTTTTTTGTGTACTGCCGCCCACATACAACATTCCGT
TTTGGTGTACCGATCGTTGCAAAGCAGCCCACCATTTCGTTTGTACACGG
TGCTGCGGCTCACCCTCCCTCTGACGGTTGTGCACCCCGCGTCTGCGATG
CCGTCAACTGCACCGGATTTCGCAGGGTGGCCGCGCACAACCTGGGTCCG
CTTGCCAGGGAAGTGGAGACGGAGCTCGTTACGAAGGACCTTCTCGAGCT
CTTCATT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17834:1383..3389-

>mRNA_Ecto-sp13_S_contig17834.5420.1 ID=mRNA_Ecto-sp13_S_contig17834.5420.1|Name=mRNA_Ecto-sp13_S_contig17834.5420.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17834:1383..3389- (Ectocarpus species13 EcNAP12_S_4_19m)
CCATTTAGCAACCCCACGACGCTCCCTCCCCCGAAGGTGTTGCTCTGCAT
GGCGGAGCAGGTGGGGAAGCTAACTGCGCACATAGGAGGAAAGCAGCACG
CGCATGAGCTCTTGGTGCCCTTGGAGCAGCTGGCGTCCGTGGAGGAAAGC
ACGGTCCGAGACAAGGCGTTGGAGTCGATCCAGACGGTGGCTCGCTGCCT
GTCGCCGGAGCAGCTGACGGACCACATGGTGCCCCTCCTCTCCAGGCTCA
CGCTCAAGGAGTGGTTCACGGCCCGCATGTCGGCGTGCTGCCTCGCGCCG
CCGACCTACGCGCTGCTGCTGCAGCTTCTACCGCCCACGGCGCCTGCCGC
GTCGACGCTCCCGGAGAAGGACGCGGCGGCGGGGGGCGGGGCGGGAGCGG
CGGCGCGGGCGGAGGTGCGGGAGATGTTCAAGAAACTCTGTACGGACGAC
ACTCCCATGGTCCGAAGGGTGGCCGCGCACAACCTGGGTCCGCTTGCCAG
GGAAGTGGAGACGGAGCTCGTTACGAAGGACCTTCTCGAGCTCTTCATT
back to top