mRNA_Ecto-sp13_S_contig17827.5418.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17827.5418.1 vs. uniprot
Match: A0A6H5JXU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU8_9PHAE) HSP 1 Score: 383 bits (983), Expect = 1.010e-133 Identity = 181/207 (87.44%), Postives = 193/207 (93.24%), Query Frame = 1
Query: 61 MSSWYTPERYGDWPGSSPPERNTDLRDILLWQHVFLGGLGMKTHVHVAVVEAGLRGCDKTFMMDVVFGTPKKEGDPLPII*RWEFCPTRITPGLVAKPSLAVWHETAPCFLDGVVTTVTKIAIHGRIPLEWAWPNPRAGRLPTARRPLPHLQWTIKLPGVQPVKRRSMLLLS----VLDEGQGVGPHGQLWNILQRRQGSKRGLERV 669
MSSWYTP+RYGDWPGSSPPERNTDLRD+LLWQHVFL GLGMKTHVHVAVVEAGLRGCD+T MMDVVFGTPKKEGDPLPI+ RWEFCPT+ TPG+V++P+LAVWHETAPCFLDGV+TTVTKIAI GRIPLEWAWPNPRAGRLPTARRPLPHLQW IKLPGVQPVKRR ML + VLDEGQGVGPHG+L NILQRRQGSKRGLERV
Sbjct: 1 MSSWYTPDRYGDWPGSSPPERNTDLRDLLLWQHVFLAGLGMKTHVHVAVVEAGLRGCDETCMMDVVFGTPKKEGDPLPILLRWEFCPTQNTPGVVSEPTLAVWHETAPCFLDGVMTTVTKIAIRGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVKRRIMLFNACCRVVLDEGQGVGPHGRLRNILQRRQGSKRGLERV 207
BLAST of mRNA_Ecto-sp13_S_contig17827.5418.1 vs. uniprot
Match: D7G025_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G025_ECTSI) HSP 1 Score: 306 bits (783), Expect = 9.370e-104 Identity = 145/169 (85.80%), Postives = 150/169 (88.76%), Query Frame = 1
Query: 61 MSSWYTPERYGDWPGSSPPERNTDLRDILLWQHVFLGGLGMKTHVHVAVVEAGLRGCDKTFMMDVVFGTPKKEGDPLPII*RWEFCPTRITPGLVAKPSLAVWHETAPCFLDGVVTTVTKIAIHGRIPLEWAWPNPRAGRLPTARRPLPHLQWTIKLPGVQPVKRRSML 567
MSSWYTPERY DWPGSSPPERNT +R+ LLWQHVFLGGLGMKTHVHVAVV+AGLRGCD TFMMDVVFGT KK G PLPI+ RW+FCPT ITPGLVAKPSLAVWHETAPCFL GVVTTVTKIAIHGRIPLEWAWPNPR LPTARRP HLQW IK P VQPVKRR ML
Sbjct: 1 MSSWYTPERYADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVVQAGLRGCDTTFMMDVVFGTAKK-GKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHLQWAIKSPRVQPVKRRMML 168
BLAST of mRNA_Ecto-sp13_S_contig17827.5418.1 vs. uniprot
Match: A0A6H5KM83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM83_9PHAE) HSP 1 Score: 212 bits (539), Expect = 9.280e-67 Identity = 99/108 (91.67%), Postives = 102/108 (94.44%), Query Frame = 1
Query: 244 MMDVVFGTPKKEGDPLPII*RWEFCPTRITPGLVAKPSLAVWHETAPCFLDGVVTTVTKIAIHGRIPLEWAWPNPRAGRLPTARRPLPHLQWTIKLPGVQPVKRRSML 567
MMDVVFGTPKKEGDPLPI+ RWE CPT ITPGLVAKPSLAVWHETAPCFLDGVVTTVTKIAIHGRIPLEWAWPNPRAGRLPTARRPLPHLQW IKLPGVQPV+R +L
Sbjct: 1 MMDVVFGTPKKEGDPLPILMRWEICPTLITPGLVAKPSLAVWHETAPCFLDGVVTTVTKIAIHGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVERGIIL 108
BLAST of mRNA_Ecto-sp13_S_contig17827.5418.1 vs. uniprot
Match: A0A6H5L242_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L242_9PHAE) HSP 1 Score: 206 bits (523), Expect = 2.050e-64 Identity = 108/170 (63.53%), Postives = 120/170 (70.59%), Query Frame = 1
Query: 61 MSSWYTPERYGDWPGSSPPERNTDLRDILLWQHVFLGGLGMKTHVHVAVVEAGLRGCDKTFMMDVVFGTPKKEGDPLPII*RWEFCPTRITPGLVAKPSLAVWHETAPCFLDGVVTTVTKIAIHGRIPLEWAW-PNPRAGRLPTARRPLPHLQWTIKLPGVQPVKRRSML 567
MSSWYTPERY D PGSS E NT +R+ LLWQHVFLGGLG C TFM+D+VFGT KK G+PLPI+ RW+FCPT I PGLVAKPSLAVWHETAPCFLDG+V+TVTKIAIHGR PL+ P G + P+LQ IKLPGVQPVKRR ML
Sbjct: 1 MSSWYTPERYADGPGSSSSEYNTAIREALLWQHVFLGGLG----------------CGTTFMVDIVFGTAKK-GEPLPILLRWDFCPTLIAPGLVAKPSLAVWHETAPCFLDGIVSTVTKIAIHGRNPLDRVGLAKPSGGATTHSTTAPPNLQCAIKLPGVQPVKRRIML 153
BLAST of mRNA_Ecto-sp13_S_contig17827.5418.1 vs. uniprot
Match: D7FPI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI1_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 3.730e-20 Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 2
Query: 35 AENRVCFRRCLLGTLRRGMVTGRDPRLPSAIQIYGTFFSGSTYFWGDWV 181
AE RVC RRCLLGTLR+GM+TGRDPRLPSAIQ+ G F GSTYFWGDWV
Sbjct: 37 AETRVCVRRCLLGTLRKGMLTGRDPRLPSAIQLCGKHFFGSTYFWGDWV 85
BLAST of mRNA_Ecto-sp13_S_contig17827.5418.1 vs. uniprot
Match: D7G3U6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U6_ECTSI) HSP 1 Score: 58.5 bits (140), Expect = 1.790e-8 Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1
Query: 568 LLSVLDEGQGVGPHGQLWNILQRRQGSKRGLERV 669
++ VLDEGQG GPHGQLW+IL RRQGSKR LER+
Sbjct: 1 MMQVLDEGQGGGPHGQLWHILGRRQGSKRDLERI 34 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17827.5418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17827.5418.1 >prot_Ecto-sp13_S_contig17827.5418.1 ID=prot_Ecto-sp13_S_contig17827.5418.1|Name=mRNA_Ecto-sp13_S_contig17827.5418.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp MSSWYTPERYGDWPGSSPPERNTDLRDILLWQHVFLGGLGMKTHVHVAVVback to top mRNA from alignment at Ecto-sp13_S_contig17827:2205..3327- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17827.5418.1 ID=mRNA_Ecto-sp13_S_contig17827.5418.1|Name=mRNA_Ecto-sp13_S_contig17827.5418.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17827:2205..3327- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17827:2205..3327- >mRNA_Ecto-sp13_S_contig17827.5418.1 ID=mRNA_Ecto-sp13_S_contig17827.5418.1|Name=mRNA_Ecto-sp13_S_contig17827.5418.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17827:2205..3327- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |