prot_Ecto-sp13_S_contig1782.5414.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1782.5414.1
Unique Nameprot_Ecto-sp13_S_contig1782.5414.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length221
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1782.5414.1 vs. uniprot
Match: D7FJK4_ECTSI (TPR repeat n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK4_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 1.420e-44
Identity = 211/220 (95.91%), Postives = 216/220 (98.18%), Query Frame = 0 
Query:    1 MSDPRLTGAIAYYREKLKQNPSNPAHHHNIAPLLFEGGDIRAAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHDTHTYKKIGAQLVTLGQGERENSHSFVDCFRAMAGKQIELATSERTNECLRKCRC 220
            MSDPR TGAIAYYREKLKQNPSNPAHHHNIAPLLFEGG++RAAM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHDTHTYKKIGAQLVTLGQ ERENSH+FVDC+RAMAGKQ+ELATSERTNECL KCRC
Sbjct:    1 MSDPRFTGAIAYYREKLKQNPSNPAHHHNIAPLLFEGGNVRAAMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHDTHTYKKIGAQLVTLGQAERENSHAFVDCYRAMAGKQVELATSERTNECLCKCRC 220
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1782.5414.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJK4_ECTSI1.420e-4495.91TPR repeat n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 126..159
e-value: 160.0
score: 4.3
coord: 92..125
e-value: 0.005
score: 26.1
coord: 58..91
e-value: 11.0
score: 14.6
coord: 24..57
e-value: 4.4
score: 16.3
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 58..91
score: 5.222
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 126..159
score: 5.605
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 92..125
score: 9.175
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 24..57
score: 9.293
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..66
e-value: 1.3E-12
score: 49.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 67..176
e-value: 2.2E-17
score: 65.0
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 5..158
NoneNo IPR availablePFAMPF13432TPR_16coord: 63..126
e-value: 4.0E-8
score: 33.8
NoneNo IPR availablePANTHERPTHR44227FAMILY NOT NAMEDcoord: 11..113
coord: 69..155
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..159
score: 29.607

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1782contigEcto-sp13_S_contig1782:7680..8587 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1782.5414.1mRNA_Ecto-sp13_S_contig1782.5414.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1782 7680..8587 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1782.5414.1 ID=prot_Ecto-sp13_S_contig1782.5414.1|Name=mRNA_Ecto-sp13_S_contig1782.5414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=221bp
MSDPRLTGAIAYYREKLKQNPSNPAHHHNIAPLLFEGGDIRAAMRHYRRA
FQLNPKDTNSKNDLAVILWRMGKWEAALAALCQVLMANSEHYEANVNLAA
VYFKQGAYELALRHGRKATQIRPTSPKAHRVLGQILDQMGNVEMSLHHRK
IAVRRGPGGGKSHQHDTHTYKKIGAQLVTLGQGERENSHSFVDCFRAMAG
KQIELATSERTNECLRKCRC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom