mRNA_Ecto-sp13_S_contig1782.5414.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1782.5414.1
Unique NamemRNA_Ecto-sp13_S_contig1782.5414.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1782.5414.1 vs. uniprot
Match: D7FJK4_ECTSI (TPR repeat n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK4_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 1.420e-44
Identity = 211/220 (95.91%), Postives = 216/220 (98.18%), Query Frame = 1 
Query:    1 MSDPRLTGAIAYYREKLKQNPSNPAHHHNIAPLLFEGGDIRAAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHDTHTYKKIGAQLVTLGQGERENSHSFVDCFRAMAGKQIELATSERTNECLRKCRC 660
            MSDPR TGAIAYYREKLKQNPSNPAHHHNIAPLLFEGG++RAAM XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHDTHTYKKIGAQLVTLGQ ERENSH+FVDC+RAMAGKQ+ELATSERTNECL KCRC
Sbjct:    1 MSDPRFTGAIAYYREKLKQNPSNPAHHHNIAPLLFEGGNVRAAMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHDTHTYKKIGAQLVTLGQAERENSHAFVDCYRAMAGKQVELATSERTNECLCKCRC 220
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1782.5414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJK4_ECTSI1.420e-4495.91TPR repeat n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1782contigEcto-sp13_S_contig1782:7680..8587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score155.6
Seed ortholog evalue2.7e-35
Seed eggNOG ortholog2880.D7FJK4
Model size663
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-04_006440.1
Cds size663
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462923.5146184-CDS-Ecto-sp13_S_contig1782:7679..82851681462923.5146184-CDS-Ecto-sp13_S_contig1782:7679..8285Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1782 7680..8285 -
1681462923.526411-CDS-Ecto-sp13_S_contig1782:8530..85871681462923.526411-CDS-Ecto-sp13_S_contig1782:8530..8587Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1782 8531..8587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1782.5414.1prot_Ecto-sp13_S_contig1782.5414.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1782 7680..8587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1782.5414.1

>prot_Ecto-sp13_S_contig1782.5414.1 ID=prot_Ecto-sp13_S_contig1782.5414.1|Name=mRNA_Ecto-sp13_S_contig1782.5414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=221bp
MSDPRLTGAIAYYREKLKQNPSNPAHHHNIAPLLFEGGDIRAAMRHYRRA
FQLNPKDTNSKNDLAVILWRMGKWEAALAALCQVLMANSEHYEANVNLAA
VYFKQGAYELALRHGRKATQIRPTSPKAHRVLGQILDQMGNVEMSLHHRK
IAVRRGPGGGKSHQHDTHTYKKIGAQLVTLGQGERENSHSFVDCFRAMAG
KQIELATSERTNECLRKCRC*
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mRNA from alignment at Ecto-sp13_S_contig1782:7680..8587-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1782.5414.1 ID=mRNA_Ecto-sp13_S_contig1782.5414.1|Name=mRNA_Ecto-sp13_S_contig1782.5414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=908bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1782:7680..8587- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGATCCTCGGTTAACCGGAGCGATTGCCTACTACCGAGAGAAGCT
AAAACAGGTGTCTGACGATGTGTTTAGATCAACAATCCTCGACAGGTAGA
CACATGGTGTCTCTGTAGGGGTTTGCATGCCGCGAAGGGTTGCGCTTATG
GTGAAGGCGGTCGTTGACTGTTGGGAACGCTCGACCCACAGATGCATGTT
GATGAAGGCCACAGCGATAATTGTTGTAGCTTCTGACCGCCCTTTGAAGG
TTGACAACGGACGCATTCCTTGTTTGCTGCCGCCGTTCGCTGCCACGTCC
AGAATCCTTCAAATCCGGCCCATCACCACAATATTGCACCTCTTCTCTTT
GAAGGAGGAGACATCAGGGCCGCGATGCGCCACTATCGCAGAGCGTTTCA
GCTGAACCCCAAGGACACAAACTCCAAGAACGACCTGGCTGTCATTCTTT
GGCGGATGGGCAAATGGGAAGCTGCGTTGGCCGCGTTGTGCCAAGTTTTG
ATGGCCAACAGCGAGCACTACGAAGCGAATGTAAACCTTGCTGCGGTGTA
TTTCAAGCAAGGAGCGTACGAACTTGCTTTGAGACATGGACGGAAAGCTA
CGCAGATCCGACCTACCAGTCCCAAAGCGCACCGCGTTCTAGGACAAATT
TTGGATCAAATGGGGAACGTCGAAATGTCGCTTCACCACCGGAAGATTGC
GGTACGACGAGGGCCGGGGGGTGGCAAGTCCCACCAACACGACACGCACA
CCTACAAGAAAATCGGCGCACAGCTTGTCACGCTCGGACAAGGGGAGCGA
GAAAACAGCCATTCCTTTGTGGACTGCTTTAGAGCAATGGCAGGGAAACA
AATTGAGCTTGCGACGTCAGAAAGGACGAACGAGTGTTTGCGTAAGTGCC
GATGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1782:7680..8587-

>mRNA_Ecto-sp13_S_contig1782.5414.1 ID=mRNA_Ecto-sp13_S_contig1782.5414.1|Name=mRNA_Ecto-sp13_S_contig1782.5414.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1782:7680..8587- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGATCCTCGGTTAACCGGAGCGATTGCCTACTACCGAGAGAAGCT
AAAACAGAATCCTTCAAATCCGGCCCATCACCACAATATTGCACCTCTTC
TCTTTGAAGGAGGAGACATCAGGGCCGCGATGCGCCACTATCGCAGAGCG
TTTCAGCTGAACCCCAAGGACACAAACTCCAAGAACGACCTGGCTGTCAT
TCTTTGGCGGATGGGCAAATGGGAAGCTGCGTTGGCCGCGTTGTGCCAAG
TTTTGATGGCCAACAGCGAGCACTACGAAGCGAATGTAAACCTTGCTGCG
GTGTATTTCAAGCAAGGAGCGTACGAACTTGCTTTGAGACATGGACGGAA
AGCTACGCAGATCCGACCTACCAGTCCCAAAGCGCACCGCGTTCTAGGAC
AAATTTTGGATCAAATGGGGAACGTCGAAATGTCGCTTCACCACCGGAAG
ATTGCGGTACGACGAGGGCCGGGGGGTGGCAAGTCCCACCAACACGACAC
GCACACCTACAAGAAAATCGGCGCACAGCTTGTCACGCTCGGACAAGGGG
AGCGAGAAAACAGCCATTCCTTTGTGGACTGCTTTAGAGCAATGGCAGGG
AAACAAATTGAGCTTGCGACGTCAGAAAGGACGAACGAGTGTTTGCGTAA
GTGCCGATGCTGA
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