mRNA_Ecto-sp13_S_contig17819.5411.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17819.5411.1
Unique NamemRNA_Ecto-sp13_S_contig17819.5411.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17819.5411.1 vs. uniprot
Match: A0A6H5JHX4_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX4_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.630e-16
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 AGVVVKEYVVRCAMTEPQAKVYSAVARSREIVAALSGEGAAIPPPAPA 144
            A VVVKEYVVRCAMTEPQAKVYSAVARSRE+VAALSGEGAAIPP APA
Sbjct:  977 ARVVVKEYVVRCAMTEPQAKVYSAVARSREVVAALSGEGAAIPPSAPA 1024
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BLAST of mRNA_Ecto-sp13_S_contig17819.5411.1 vs. uniprot
Match: D7FME7_ECTSI (Myb-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME7_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 7.190e-10
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:   31 RCAMTEPQAKVYSAVARSREIVAALSGEGAAIPPPA 138
            RCAMT+PQAKVYSAVARSRE+VAALSGEG  IPPPA
Sbjct: 1213 RCAMTKPQAKVYSAVARSREVVAALSGEGTTIPPPA 1248
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17819.5411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHX4_9PHAE1.630e-1693.75SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
D7FME7_ECTSI7.190e-1088.89Myb-like domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17819contigEcto-sp13_S_contig17819:2098..2826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size227
Hectar predicted targeting categoryother localisation
Exons2
Cds size225
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462923.2872448-CDS-Ecto-sp13_S_contig17819:2099..22441681462923.2872448-CDS-Ecto-sp13_S_contig17819:2099..2244Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17819 2100..2244 -
1681462923.2963161-CDS-Ecto-sp13_S_contig17819:2746..28261681462923.2963161-CDS-Ecto-sp13_S_contig17819:2746..2826Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17819 2747..2826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17819.5411.1prot_Ecto-sp13_S_contig17819.5411.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17819 2100..2826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17819.5411.1

>prot_Ecto-sp13_S_contig17819.5411.1 ID=prot_Ecto-sp13_S_contig17819.5411.1|Name=mRNA_Ecto-sp13_S_contig17819.5411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
AGVVVKEYVVRCAMTEPQAKVYSAVARSREIVAALSGEGAAIPPPAPASN
GITTPVTTPPPPTAASLSEAKGGPA
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mRNA from alignment at Ecto-sp13_S_contig17819:2098..2826-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17819.5411.1 ID=mRNA_Ecto-sp13_S_contig17819.5411.1|Name=mRNA_Ecto-sp13_S_contig17819.5411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=729bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17819:2098..2826- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGGGGTGGTTGTGAAGGAGTACGTGGTTCGGTGCGCGATGACCGAACC
GCAGGCCAAGGTTTACTCGGCCGTTGCCAGGTGAGTGGATAGGGCGGGGC
GGTGCGCTGATGACGTGATAGGTTGCGGCTCATGTGCAGCAGTTCGTGCA
GTGGGTGGGTTGTGGCTCTATTGGCGACAGGGAGGGAGCTTTGATGGCGT
GATAGGTTGCCGCTCATGTACAGCAGTGCGTGCAGTGGGTGGGTTGTAGC
TCTGTTGGCGGCAGGGAGGAAGCTTTGATGACGTCATAGGTTGCCGCTCA
TGGCGTGAGACCTGCTGGTGCTCCGTCTGTGCGACGAGTTTTGGCCATGT
ACCTTTTTTTTTGCCTCGTCACTTGTGGTTTCTGGACGACGATTCCGCTT
GTTTTTCGTGCGACGCTCGGGACAGTTCTTATTTTATATTTTGGCCTCAA
GACGAGCTAGCGTGAAACCACTTTTCCTTATAACCCCAATTCGTCAACTG
TCTCATACGATCGCACACCCACAAATATATAATAACCCGTTGTATCTGGG
TTGCGCGCCTCCCCCCCCTCCCCCTCCGGCAGATCGCGTGAGATCGTGGC
CGCACTCTCCGGGGAAGGAGCCGCCATTCCTCCCCCAGCGCCCGCTTCGA
ACGGCATAACTACCCCGGTAACAACACCACCACCTCCAACGGCGGCGTCG
TTGTCGGAAGCAAAAGGGGGACCCGCTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17819:2098..2826-

>mRNA_Ecto-sp13_S_contig17819.5411.1 ID=mRNA_Ecto-sp13_S_contig17819.5411.1|Name=mRNA_Ecto-sp13_S_contig17819.5411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17819:2098..2826- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGGGGTGGTTGTGAAGGAGTACGTGGTTCGGTGCGCGATGACCGAACC
GCAGGCCAAGGTTTACTCGGCCGTTGCCAGATCGCGTGAGATCGTGGCCG
CACTCTCCGGGGAAGGAGCCGCCATTCCTCCCCCAGCGCCCGCTTCGAAC
GGCATAACTACCCCGGTAACAACACCACCACCTCCAACGGCGGCGTCGTT
GTCGGAAGCAAAAGGGGGACCCGCT
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