mRNA_Ecto-sp13_S_contig1781.5408.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1781.5408.1
Unique NamemRNA_Ecto-sp13_S_contig1781.5408.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1781.5408.1 vs. uniprot
Match: D8LHH9_ECTSI (Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHH9_ECTSI)

HSP 1 Score: 422 bits (1084), Expect = 1.240e-145
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 2 
Query:    8 GPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGHEVNFPLIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTMEVPSGKGYLRVTPTS 613
            GPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGHEVNFPLIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTMEVPSGKGYLRVTPTS
Sbjct:   24 GPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGHEVNFPLIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTMEVPSGKGYLRVTPTS 225
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BLAST of mRNA_Ecto-sp13_S_contig1781.5408.1 vs. uniprot
Match: W6MEY3_9EUCA (Peroxiredoxin6-like protein (Fragment) n=1 Tax=Coenobita clypeatus TaxID=474045 RepID=W6MEY3_9EUCA)

HSP 1 Score: 265 bits (678), Expect = 1.830e-84
Identity = 125/202 (61.88%), Postives = 155/202 (76.73%), Query Frame = 2 
Query:    8 GPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGHEVNFP--LIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTMEVPSGKGYLRVTP 607
            G IKLH YLG SWG+L SHPAD+TPVCTTELG  AKL     EF KR+VK++AISCD +E H GWI DIKA+     +FP  +IAD DR +A +LGM+ PD  +A G+P+T R V+VI P+K LKL++ YPA+TGRNFDEIIR +DSLQLTA + +ATPADW+ GG CMVLP++SP+DA   FP+H+  +VPSGK YLR TP
Sbjct:    2 GVIKLHSYLGDSWGILFSHPADYTPVCTTELGRVAKL---APEFEKRNVKLMAISCDSVEDHLGWIEDIKAYNNLTGDFPYPIIADPDRDLAVTLGMIDPDEKTASGMPLTARAVFVIGPDKKLKLSILYPATTGRNFDEIIRVVDSLQLTAQKKVATPADWKCGGHCMVLPSISPDDAQNMFPQHQVHKVPSGKEYLRTTP 200
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BLAST of mRNA_Ecto-sp13_S_contig1781.5408.1 vs. uniprot
Match: C5H3W2_ERISI (Glutathione peroxidase n=1 Tax=Eriocheir sinensis TaxID=95602 RepID=C5H3W2_ERISI)

HSP 1 Score: 259 bits (663), Expect = 5.930e-82
Identity = 121/205 (59.02%), Postives = 160/205 (78.05%), Query Frame = 2 
Query:    5 QGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGHEVN----FPLIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTMEVPSGKGYLRVTP 607
            +GPIKLH YLG  WG+L SHP+D+TPVCTTELGT AK+  E   F KR+VK++AISCD +E H GWI DI+A+  H+++    +P+IAD DR +A +LGM+ PD  +A GLP+T R V+VI P+K LKL++ YPA+TGRNF+EI+R IDSLQLT  + +ATP++W  G  CMV+P+VSPE+A + FPEHK ++VPSGK YLR+TP
Sbjct:   17 EGPIKLHSYLGDMWGILFSHPSDYTPVCTTELGTVAKMMPE---FTKRNVKVMAISCDSVEDHNGWIKDIQAY--HKLSGPFPYPIIADQDRDLAVTLGMIDPDEKTAAGLPLTARAVFVIGPDKKLKLSILYPATTGRNFNEILRVIDSLQLTKEKKVATPSNWCNGDQCMVVPSVSPEEAKKLFPEHKVIQVPSGKEYLRMTP 216
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BLAST of mRNA_Ecto-sp13_S_contig1781.5408.1 vs. uniprot
Match: UPI001E672362 (peroxiredoxin-6-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E672362)

HSP 1 Score: 255 bits (651), Expect = 3.810e-80
Identity = 121/202 (59.90%), Postives = 153/202 (75.74%), Query Frame = 2 
Query:    8 GPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHT--GHEVNFPLIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTMEVPSGKGYLRVTP 607
            G IKLH YLG SWG++ +HPADFTPVCTTELG  AKL  E   F KR+VK+LAISCD +E H GWI DI+A++    E  +P+I D DR +A +LGM+ PD  +AEGLP++ R V++I P+K LKL+L YPA+TGRNF+EI+RAIDS+QLTA + +ATP DW+ G +CMVLP+VS E+A   FPEH    VPSGK Y+R TP
Sbjct:   18 GTIKLHTYLGDSWGIVFAHPADFTPVCTTELGCVAKLVPE---FTKRNVKLLAISCDSVEDHVGWIKDIQAYSELSGEFPYPIIGDKDRDLAVTLGMIDPDEKNAEGLPLSCRAVFLIGPDKRLKLSLLYPATTGRNFNEILRAIDSIQLTAAKKVATPVDWKPGSACMVLPSVSAEEAKSLFPEHTVHNVPSGKEYIRTTP 216
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BLAST of mRNA_Ecto-sp13_S_contig1781.5408.1 vs. uniprot
Match: A0A2R2YWF5_EUPSU (Perxiredoxin-6 n=1 Tax=Euphausia superba TaxID=6819 RepID=A0A2R2YWF5_EUPSU)

HSP 1 Score: 255 bits (651), Expect = 4.350e-80
Identity = 116/203 (57.14%), Postives = 151/203 (74.38%), Query Frame = 2 
Query:    5 QGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGHEVNFP--LIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTMEVPSGKGYLRVTP 607
            +G I LHDYLG  WG++ SHPAD+TPVCTTELG  AKL  E   F KR+ K+ A+SCD +E H GWI DI+A+   + NFP  ++AD  R +A  LGM+ PD  +A G+P+T R V++I P+K LKL++ YPA+TGRNFDEI+R +DSLQLTA + +ATPADW++G SCMV+P +S E A + FP+HK  +VPSGK YLR TP
Sbjct:   17 KGTIHLHDYLGDKWGIMFSHPADYTPVCTTELGRVAKLTPE---FTKRNCKLQAVSCDSVEDHHGWIKDIQAYNNLDGNFPYPIVADEKRELAVQLGMIDPDEKTASGMPLTARAVFIIGPDKKLKLSILYPATTGRNFDEILRVLDSLQLTAHKKVATPADWKQGSSCMVVPNISKEQAKQMFPQHKVHQVPSGKEYLRTTP 216
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BLAST of mRNA_Ecto-sp13_S_contig1781.5408.1 vs. uniprot
Match: UPI001CF40163 (peroxiredoxin-6-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF40163)

HSP 1 Score: 254 bits (650), Expect = 5.570e-80
Identity = 118/204 (57.84%), Postives = 154/204 (75.49%), Query Frame = 2 
Query:    5 QGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGHEVNFP--LIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTME-VPSGKGYLRVTP 607
            +G IK ++++G SW +L SHPAD+TPVCTTELG  +++     EF KR+VK+ A+SCD  ESH+GWI DIK H   +  FP  +IAD DR +A  LGM+ PD   A+G+P+T R V++I P+K LKL+L YPA+TGRNFDEI+R +DSLQLTA + +ATPADW+ GG CMVLPTV PE+AA+ FP+  T E +PSGKGY+R TP
Sbjct:   17 EGKIKFYEFIGDSWAILFSHPADYTPVCTTELGRVSEI---APEFAKRNVKLCALSCDSAESHKGWIEDIKHHVKSKAKFPYPIIADEDRDLAVKLGMIDPDEKDAQGMPLTARAVFIIGPDKKLKLSLLYPATTGRNFDEILRVVDSLQLTAEKKVATPADWKSGGDCMVLPTVKPEEAAKLFPKGVTTEDMPSGKGYMRFTP 217
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BLAST of mRNA_Ecto-sp13_S_contig1781.5408.1 vs. uniprot
Match: A0A6A0GX74_HYAAZ (Thioredoxin peroxidase-like 3 n=1 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0GX74_HYAAZ)

HSP 1 Score: 254 bits (649), Expect = 6.660e-80
Identity = 119/200 (59.50%), Postives = 149/200 (74.50%), Query Frame = 2 
Query:    8 GPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTG-HEVNFPLIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTMEVPSGKGYLRVT 604
            G IK HD+LG SWG+L SHP D+TPVCTTELG  A L     +F KR  K++A+SCD L+ H GWI DIKA+    E  +P+IAD  R++A  LGM+ PD   A+G+P T R V+V+ P+K LKL++ YPA+TGRNFDEI+RA+DSLQLTAT+ +ATPADW KG +CMVLP+VSP+DA + FPEH    VPSGK YLR T
Sbjct:   18 GKIKFHDWLGESWGILFSHPRDYTPVCTTELGRAAAL---APQFEKRGCKLIALSCDALDDHHGWIEDIKAYNKLSEFPYPIIADDKRALAVQLGMIDPDEQGADGMPYTCRAVFVVGPDKKLKLSMLYPATTGRNFDEILRALDSLQLTATQKVATPADWTKGSACMVLPSVSPDDAKQLFPEHVCHPVPSGKTYLRTT 214
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BLAST of mRNA_Ecto-sp13_S_contig1781.5408.1 vs. uniprot
Match: UPI0009E4807C (peroxiredoxin-6-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E4807C)

HSP 1 Score: 254 bits (649), Expect = 7.870e-80
Identity = 121/204 (59.31%), Postives = 153/204 (75.00%), Query Frame = 2 
Query:    5 QGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGH--EVNFPLIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEH-KTMEVPSGKGYLRVTP 607
            QG I+ H+Y+  SW +L SHPAD+TPVCTTELG  A L  E   F KR VK++A+SCD +ESH+GWI DI   + +  E  +P+IAD  R +A  LGM+ PD   A+GLP+T R V++I P+K LKL+L YPA+TGRNFDEI+R IDSLQLTAT+ +ATPADW+ GG CMVLPTV PED A+ FP+  KT ++PSGKGY+R TP
Sbjct:   17 QGEIQFHEYIKDSWAILFSHPADYTPVCTTELGRVANLLEE---FKKRGVKLIALSCDGVESHKGWIKDIMFESNYNGEFPYPIIADEGRDLAVKLGMIDPDEKDAQGLPLTARAVFIIGPDKRLKLSLLYPATTGRNFDEILRVIDSLQLTATKKVATPADWKAGGDCMVLPTVKPEDVAKLFPKGVKTKDMPSGKGYMRYTP 217
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BLAST of mRNA_Ecto-sp13_S_contig1781.5408.1 vs. uniprot
Match: M1XMN8_9METZ (Alkyl hydroperoxide reductase n=1 Tax=Sycon ciliatum TaxID=27933 RepID=M1XMN8_9METZ)

HSP 1 Score: 254 bits (648), Expect = 1.080e-79
Identity = 119/203 (58.62%), Postives = 148/203 (72.91%), Query Frame = 2 
Query:    5 QGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGH--EVNFPLIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTMEVPSGKGYLRVTP 607
            +G I  H +LG SWG+L SHPADFTPVCTTELG   ++N    EF KR+VK +A+SCDP++ H  WI DI+A++    +  +P+IAD  R +A   GML PD     G+P+T R V++I P+K LKL+L YPASTGRNFDEIIR IDSLQLTA + +ATP +WQ GG CMVLP+V PEDA   FPEH T E+PSGKGY+R TP
Sbjct:   18 KGSISFHSFLGDSWGILFSHPADFTPVCTTELG---RVNQLLAEFEKRNVKPIALSCDPVDKHSDWIKDIQAYSAQSGDWGYPIIADEQRELAVRFGMLDPDEKDKAGMPLTARCVFIIGPDKKLKLSLLYPASTGRNFDEIIRVIDSLQLTAYKKVATPVNWQPGGECMVLPSVKPEDAKTLFPEHYTKELPSGKGYMRFTP 217
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BLAST of mRNA_Ecto-sp13_S_contig1781.5408.1 vs. uniprot
Match: A0A1W0A4M4_9STRA (Thioredoxin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A4M4_9STRA)

HSP 1 Score: 253 bits (647), Expect = 1.990e-79
Identity = 119/202 (58.91%), Postives = 153/202 (75.74%), Query Frame = 2 
Query:    5 QGPIKLHDYLGSSWGLLCSHPADFTPVCTTELGTCAKLNVEGGEFPKRDVKMLAISCDPLESHQGWIGDIKAHTGHEVNFPLIADADRSIAASLGMLHPDHMSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTATRSLATPADWQKGGSCMVLPTVSPEDAAEKFPE-HKTMEVPSGKGYLRVTP 607
            QGP+ L  Y    WGLLCSHP D+TP+CTTELG  A+L+   GEF KR VK++ +SC+ + SHQGWI DI+A++GH+VN+P+IAD +R IA+ LGML  D +   GLP+TVR+V+V+ P+  +KL LTYPASTGRNF EI+R IDSLQLT+  S ATP +W KG    ++PTVS EDAA KFP+ ++  E+PSGKGYLR TP
Sbjct:   23 QGPLSLKQYFDGQWGLLCSHPDDYTPICTTELGELARLD-NLGEFSKRHVKVIGLSCNDVNSHQGWIKDIEAYSGHQVNYPIIADKNRVIASELGMLSSDDLDKAGLPLTVRSVFVLGPDLSIKLTLTYPASTGRNFVEILRVIDSLQLTSNYSCATPVNWVKGEKACIVPTVSNEDAAHKFPKGYEIEELPSGKGYLRFTP 223
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1781.5408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHH9_ECTSI1.240e-145100.00Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=28... [more]
W6MEY3_9EUCA1.830e-8461.88Peroxiredoxin6-like protein (Fragment) n=1 Tax=Coe... [more]
C5H3W2_ERISI5.930e-8259.02Glutathione peroxidase n=1 Tax=Eriocheir sinensis ... [more]
UPI001E6723623.810e-8059.90peroxiredoxin-6-like n=1 Tax=Procambarus clarkii T... [more]
A0A2R2YWF5_EUPSU4.350e-8057.14Perxiredoxin-6 n=1 Tax=Euphausia superba TaxID=681... [more]
UPI001CF401635.570e-8057.84peroxiredoxin-6-like n=1 Tax=Acropora millepora Ta... [more]
A0A6A0GX74_HYAAZ6.660e-8059.50Thioredoxin peroxidase-like 3 n=1 Tax=Hyalella azt... [more]
UPI0009E4807C7.870e-8059.31peroxiredoxin-6-like n=1 Tax=Orbicella faveolata T... [more]
M1XMN8_9METZ1.080e-7958.62Alkyl hydroperoxide reductase n=1 Tax=Sycon ciliat... [more]
A0A1W0A4M4_9STRA1.990e-7958.91Thioredoxin n=1 Tax=Thraustotheca clavata TaxID=74... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1781contigEcto-sp13_S_contig1781:12056..15449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop1
Start1
Seed ortholog score186.8
Seed ortholog evalue7.5e-45
Seed eggNOG ortholog7668.SPU_013368-tr
Preferred namePRDX6
Model size1247
KEGG rclassRC00034
KEGG koko:K11188
KEGG ReactionR00602,R02596,R03919,R04007,R07443
KEGG Pathwayko00940,ko01100,ko01110,map00940,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0000302,GO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004601,GO:0004602,GO:0004620,GO:0004623,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005829,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009395,GO:0009636,GO:0009893,GO:0009987,GO:0010468,GO:0010604,GO:0010628,GO:0012505,GO:0016042,GO:0016043,GO:0016192,GO:0016209,GO:0016298,GO:0016491,GO:0016684,GO:0016787,GO:0016788,GO:0016999,GO:0017001,GO:0017144,GO:0019219,GO:0019222,GO:0019637,GO:0019899,GO:0022607,GO:0030030,GO:0030031,GO:0030141,GO:0031323,GO:0031325,GO:0031410,GO:0031625,GO:0031974,GO:0031982,GO:0031983,GO:0032060,GO:0032940,GO:0033120,GO:0034774,GO:0035578,GO:0036230,GO:0042119,GO:0042221,GO:0042582,GO:0042737,GO:0042743,GO:0042744,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043484,GO:0044085,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044389,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045935,GO:0046434,GO:0046475,GO:0046486,GO:0046503,GO:0046903,GO:0046983,GO:0047499,GO:0048024,GO:0048026,GO:0048471,GO:0048518,GO:0048522,GO:0050684,GO:0050685,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051186,GO:0051187,GO:0051234,GO:0051252,GO:0051254,GO:0051716,GO:0052689,GO:0055114,GO:0060205,GO:0060255,GO:0065007,GO:0070013,GO:0070887,GO:0071704,GO:0071840,GO:0072593,GO:0080090,GO:0097237,GO:0097708,GO:0098754,GO:0098869,GO:0099503,GO:0120031,GO:0120036,GO:1901575,GO:1901700,GO:1903311,GO:1903313,GO:1990748
Exons5
EggNOG free text desc.peroxiredoxin activity
EggNOG OGs38CN4@33154,3BBQ4@33208,3CW2U@33213,COG0450@1,KOG0854@2759
Ec32 ortholog descriptionGlutathione peroxidase
Ec32 orthologEc-11_004010.1
EC1.11.1.15,1.11.1.7
Cds size459
COG Functional cat.O
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1781.5408.1prot_Ecto-sp13_S_contig1781.5408.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1781 12687..14688 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462922.9845912-UTR-Ecto-sp13_S_contig1781:12055..126861681462922.9845912-UTR-Ecto-sp13_S_contig1781:12055..12686Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1781 12056..12686 -
1681462923.0496116-UTR-Ecto-sp13_S_contig1781:14688..147171681462923.0496116-UTR-Ecto-sp13_S_contig1781:14688..14717Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1781 14689..14717 -
1681462923.0631096-UTR-Ecto-sp13_S_contig1781:15321..154491681462923.0631096-UTR-Ecto-sp13_S_contig1781:15321..15449Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1781 15322..15449 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462923.001483-CDS-Ecto-sp13_S_contig1781:12686..127461681462923.001483-CDS-Ecto-sp13_S_contig1781:12686..12746Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1781 12687..12746 -
1681462923.0137076-CDS-Ecto-sp13_S_contig1781:13175..133101681462923.0137076-CDS-Ecto-sp13_S_contig1781:13175..13310Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1781 13176..13310 -
1681462923.0234342-CDS-Ecto-sp13_S_contig1781:13888..140391681462923.0234342-CDS-Ecto-sp13_S_contig1781:13888..14039Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1781 13889..14039 -
1681462923.0348384-CDS-Ecto-sp13_S_contig1781:14575..146881681462923.0348384-CDS-Ecto-sp13_S_contig1781:14575..14688Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1781 14576..14688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1781.5408.1

>prot_Ecto-sp13_S_contig1781.5408.1 ID=prot_Ecto-sp13_S_contig1781.5408.1|Name=mRNA_Ecto-sp13_S_contig1781.5408.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp
MLAISCDPLESHQGWIGDIKAHTGHEVNFPLIADADRSIAASLGMLHPDH
MSAEGLPMTVRTVYVISPEKILKLALTYPASTGRNFDEIIRAIDSLQLTA
TRSLATPADWQKGGSCMVLPTVSPEDAAEKFPEHKTMEVPSGKGYLRVTP
TS*
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mRNA from alignment at Ecto-sp13_S_contig1781:12056..15449-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1781.5408.1 ID=mRNA_Ecto-sp13_S_contig1781.5408.1|Name=mRNA_Ecto-sp13_S_contig1781.5408.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3394bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1781:12056..15449- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGCAGGGCCCAATCAAGCTCCATGACTATCTCGGGTCCTCCTGGGGGC
TGCTTTGCTCGCACCCGGCCGACTTCACGCCAGTGTGCACCACCGAGCTT
GGGACATGCGCAAAGCTGAACGTGGAAGGTTGGTGTCTACTGCTGCGAAA
ATCGTGCCCTGTGGCCCTAGAATGTGTACCACACTTGTGCGGGCCGAGCC
ACTGCCGTTTCCGTGCATCTCGTGTCATTTTTGGTTGCACTTTGATCTCA
CCGGTTCATGCGTTCTTCCGTGCTTTTTGGCGGATCTGTTCACATTATTC
TCTCGCCGGTTCAACCGATGTCGTCCGTTGTCCGAAGTTGATCTGCTCTC
CTCGACTGCCTCCTGCCCTTGTACAGTGCAGAGAAGATTGACCTCGGTCC
TGCAACGTTCGAGCAAGGGCCGCGCGAAACCGTTAGCTTATACGCCCTCC
GGTTCCAAAACGAATTGACTCGTTTCGAAGACTAAAATACCATCAAGTGC
CTGTACATGTCTGATCAATCGGGGTGAAATCCATTCGTGAAGCTGTCGAC
GGCGCTCGCCGCAATGGGACAGCAAAACCTCGCAGGCGGCGACCCCACTG
GCAGCGCCACGCCATCCACACATGCCTCCAACCGCGCCGCTGTTGCCCAG
CAGCTTACTCCTAAAGCGCAGCTCAACCGCAGTTGGTGCGTGTTTCCTGG
GCTTTGTTTCTTTCCCGTTTCTTATGTTTCAGGCGGCGAGTTCCCAAAGC
GGGACGTGAAGATGTTGGCCATCTCGTGTGATCCGTTGGAGTCGCACCAG
GGCTGGATCGGCGACATCAAGGCACACACCGGCCACGAGGTCAACTTCCC
GCTGATTGCGGATGCCGACCGCAGGTGTAGAAAGAAGAAGAGAAGCACCC
TTGCGTTTCATACGGTCACGTACCCCCCCCCCCCACCGTGCTACAGTGTA
GGGCGAACGCTAGAAAAACGTTGAGTACGTATGGAAAACCGGTGAGAGGG
AGATATAGAGTGCGATGAATCGCCGGAAAGGTGATAATATGGAAGGAGTT
GGGAGGAAACTAGAGAGACGTACCTGTCTTCTCAGCGACAACCTCGTTGT
TACGTTTGTGCGCGGGGTCCTTCCTCCGTTGGAAACTTGTCCCGACCGGG
TTAGAGTGCACATCGGAGTCTTTTTGATGTCCGTCGGTATTTTCGATGAC
AGTAGTGCGCTTCGTGAAATGCTGGGTTATAAACTGTTCGACAAGTTGGG
GGGTCCCTTGTTCAAGATTTGCGTCGGTGGCATTGCACTCGCTTTTGAGC
TTTCACCACAACGATACGAGCGTGTTCCACCAAGCGGCCGTTGTGACGCA
TGGGTGCAACAGTTGTCGATAAATTTCTCTCTCAACCCGCCACCCTCGAA
TTGTTTGTAGCATCGCGGCTTCGCTGGGCATGCTGCACCCGGACCACATG
AGCGCGGAGGGCCTCCCGATGACGGTTCGCACCGTGTACGTCATCAGCCC
CGAGAAGATCCTCAAGCTCGCGCTCACTTACCCGGCTTCCACCGGCAGGA
ACTTCGACGAGGTTTGTTTTGTCGCAACACCGTAGCTTATGCTCATGAGG
GTGGCTTACTTGTGATACAGCAGGTCTGGCGTGGTTGCTAGAGAGGCGGG
TGGAGGTTATGGCGTGGAAAAGCCGTAGAGGCACCCATGTAGTCCGGTGG
CATATGATTGGTGGCGTAGGCAGCTTGTGCGACAAAACGTTTTTATCGGG
GAATGAAGGAGTCTTGCAGTTTTCCTGGGTGCCTTAGAACTTGGTGTCTT
CTGACCGACTACCCCGTCACAGAGAGAGATGACTACTATTCAGTATGATC
AGTTATAGCTGCAGCCGGCGCGCAACTCTGTGACAACATTTTTGAACGCG
CTTCGATTCGCGGTTAGATTTGAGAGCTATACGTAGAGACGTAGAGATGA
TAGCTATGCTGTTGTCCCTGTTATGTTGTCGTCCCTCTTTAGCTGGGGAG
ATAGACTGATTTTCCCCCAGAAACTGCCGCAGCAACAGGTATCTCACACC
ACTGGGAGATGAAAAAACACGCATCCTTCTGACAGCAGTCAGTCCTCCTC
CTTCAACGTCGCCAATATGCGGTGCCCCTCTGTACATAGATCATTCGGGC
GATCGACTCCCTACAGCTCACGGCCACCCGCAGCCTGGCCACCCCAGCCG
ACTGGCAGAAGGGCGGCAGTTGCATGGTTCTGCCCACGGTCAGCCCCGAA
GATGCAGCTGAAAAGTTCCCCGAGGTATGCGCATACTGTGCTTTGATTTT
GTCTTTTGTACAAGATTACAACAATCAACACTTCTTCAGGCTTCAATGAG
TGGATCACGCCACATGCGCAGTATGATGCCATCATCACTACGGTTGTCCA
CCCGGACAACTGTTAACAGTAGTAGAGCCGCTGAAGTCATGTTGTACCAA
GCAAGGAACATGCACTCTCCGTCATCCGCAGATGAACAGAAGTTCCATGC
CAGATGCCACACAGCTTAAAAGAAATTGCGCCAGCGGTTTATGGTTCATC
TTGCTCCTGGATATTAGTACCGTGCATTTACCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCGCTCCCCCCCCCCCCCCACACACGAGAACAACGGCAC
CCGCGCCAGGACGGCGCCCGCCCCCCCTCGTGATTCCGCGTGTTTCCCTC
CAGCACAAGACGATGGAAGTGCCCTCGGGCAAAGGGTACCTGCGGGTCAC
CCCCACGTCGTGATGGGTTAAACCCGACCACAAGATCATGCGCCGCGCTG
AAAAAGCAACCAACGACTTTCACCATCTTGGCTCTTTGGGATGCGAAGTT
CTTCATACGGTGTACGTTAGACGGTTGTTCCTACCTTCTGCTCGTGTGCA
ATTCTGACGCTTCTATGTAAACGATGGGAGCCATCGCTGGGAGGCCGGAC
TATTGGCATAGATTATGATCTGAAACTGTTTTAGGTGTTCAGTATGAGGC
GTGCAAGGTTCCACTAGATATGCCCGGAACACGATCGTATGCTAGCACAC
AGCAGTAGTGTAGCCCTTCTGGTTTTTGGTGGAAACGCAATCCGTATTAT
TTGTTGGCCACCCTGATGTGGACCACGTGCCACAAGGCTGTGAATCCTTC
GGGGCGCGGCTTTATAGAGCTTGACCTCACTGTTTTACATTTGCCCCTTT
CCTCCGTCCTCGGGGGGGGGACGGGAGTTGTGTCTGGAGGAAGGTGAGAA
CCAACCCCAGAAGGATCACGAGGAAACATTTGTGGCTCTTCGATGTTGTA
ATCTCTTGGTGGACCTCCGCTTTCGTGGCTTACCCATTACCCTGAACCAG
GAACAACAAGTGTGTGTTCGTCATAAACACTTCCATCTAAAATA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1781:12056..15449-

>mRNA_Ecto-sp13_S_contig1781.5408.1 ID=mRNA_Ecto-sp13_S_contig1781.5408.1|Name=mRNA_Ecto-sp13_S_contig1781.5408.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1781:12056..15449- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGGCCATCTCGTGTGATCCGTTGGAGTCGCACCAGGGCTGGATCGG
CGACATCAAGGCACACACCGGCCACGAGGTCAACTTCCCGCTGATTGCGG
ATGCCGACCGCAGCATCGCGGCTTCGCTGGGCATGCTGCACCCGGACCAC
ATGAGCGCGGAGGGCCTCCCGATGACGGTTCGCACCGTGTACGTCATCAG
CCCCGAGAAGATCCTCAAGCTCGCGCTCACTTACCCGGCTTCCACCGGCA
GGAACTTCGACGAGATCATTCGGGCGATCGACTCCCTACAGCTCACGGCC
ACCCGCAGCCTGGCCACCCCAGCCGACTGGCAGAAGGGCGGCAGTTGCAT
GGTTCTGCCCACGGTCAGCCCCGAAGATGCAGCTGAAAAGTTCCCCGAGC
ACAAGACGATGGAAGTGCCCTCGGGCAAAGGGTACCTGCGGGTCACCCCC
ACGTCGTGA
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