mRNA_Ecto-sp13_S_contig17807.5406.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17807.5406.1
Unique NamemRNA_Ecto-sp13_S_contig17807.5406.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17807.5406.1 vs. uniprot
Match: A0A6H5L524_9PHAE (DHC_N2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L524_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 9.210e-31
Identity = 69/94 (73.40%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:    1 GKAQLQKNVEKAKRRVEGNVDSTKMRIAEFIDSDARPREMSETASSISKELAGLKAQAVDIGEEEAKVEGHTSGTLVALAEKVIVSFQPYADLW 282
            GKAQLQKN                     FIDSDARPREMSETA+SISKELAGLKAQAVDIGEEEAKV+GHTSG LVALAEKVIVSFQPYAD+W
Sbjct: 1680 GKAQLQKNXXXXXXXXXXXXXXXXXXXXXFIDSDARPREMSETAASISKELAGLKAQAVDIGEEEAKVDGHTSGALVALAEKVIVSFQPYADIW 1773
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BLAST of mRNA_Ecto-sp13_S_contig17807.5406.1 vs. uniprot
Match: D7G491_ECTSI (Similar to Dynein heavy chain 3, axonemal (Axonemal beta dynein heavy chain 3) (Ciliary dynein heavy chain 3), partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G491_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 5.940e-30
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:   88 FIDSDARPREMSETASSISKELAGLKAQAVDIGEEEAKVEGHTSGTLVALAEKVIVSFQPYADLW 282
            FIDSDARPREMSE A+SISKELAGLKAQAVDIGEEEAKV+GHTSGTLVALAEKVIVSFQPYADLW
Sbjct: 1522 FIDSDARPREMSENAASISKELAGLKAQAVDIGEEEAKVDGHTSGTLVALAEKVIVSFQPYADLW 1586
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17807.5406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L524_9PHAE9.210e-3173.40DHC_N2 domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G491_ECTSI5.940e-3095.38Similar to Dynein heavy chain 3, axonemal (Axonema... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17807contigEcto-sp13_S_contig17807:943..3246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score124.4
Seed ortholog evalue2.8e-26
Seed eggNOG ortholog2880.D7G491
Preferred nameDNAH12
Model size282
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
Cds size282
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462922.7623968-CDS-Ecto-sp13_S_contig17807:942..9871681462922.7623968-CDS-Ecto-sp13_S_contig17807:942..987Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17807 943..987 -
1681462922.7750769-CDS-Ecto-sp13_S_contig17807:1610..17001681462922.7750769-CDS-Ecto-sp13_S_contig17807:1610..1700Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17807 1611..1700 -
1681462922.785016-CDS-Ecto-sp13_S_contig17807:2770..28841681462922.785016-CDS-Ecto-sp13_S_contig17807:2770..2884Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17807 2771..2884 -
1681462922.7952611-CDS-Ecto-sp13_S_contig17807:3213..32461681462922.7952611-CDS-Ecto-sp13_S_contig17807:3213..3246Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17807 3214..3246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17807.5406.1prot_Ecto-sp13_S_contig17807.5406.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17807 943..3246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17807.5406.1

>prot_Ecto-sp13_S_contig17807.5406.1 ID=prot_Ecto-sp13_S_contig17807.5406.1|Name=mRNA_Ecto-sp13_S_contig17807.5406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
GKAQLQKNVEKAKRRVEGNVDSTKMRIAEFIDSDARPREMSETASSISKE
LAGLKAQAVDIGEEEAKVEGHTSGTLVALAEKVIVSFQPYADLW
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mRNA from alignment at Ecto-sp13_S_contig17807:943..3246-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17807.5406.1 ID=mRNA_Ecto-sp13_S_contig17807.5406.1|Name=mRNA_Ecto-sp13_S_contig17807.5406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2304bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17807:943..3246- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAAAGCGCAGCTGCAGAAGAACGTAGAAAAGGTGACGATGCTGCCGCC
GTATGCCTTGGCTCCCTCCCCGGGTACCCCGCAAATACCACACGGAAGAA
TCATTCACTGTTATTTGGGGTTGGGAAACGTGGCAGAGTTCAATCGTTGT
TCCAGATGTTCCACGTCGCAGGATACCCTTCGCCATCGACAGAGAGAGAG
AACGAGGGGACCGTTTCCAGTTGATCGAAGGAAAACCTGCTTGATGAAGC
AAACACGTCCCCGCTCTCCCCATGGCATTCTTCAATAATTGTTGTGGGCC
AGGCTTCATGTGACATGGCGTCATTTGTCCCGACTTGCCTGCGGTTGTTT
CTTGATGTTCAGGCGAAGCGAAGGGTGGAGGGGAACGTGGATTCGACGAA
GATGAGGATCGCCGAGTTCATCGACAGCGACGCCCGTCCGCGCGAGATGT
CCGAAACCGCTTCATCAATATCGAAGGTAGTTTCCTTTTCGTCCTCTTTC
GTGAATATCGTTTGTTGAACCGTGGCAGTTGCGTATTGCGATCGCTACTA
AAGGTACTATTTCCGCTTGATCAATGATATTTTCGTCTTCCTCTTGGGTC
GTTGAGGTAAAGAATAGAGAACGTTCGAAGACAAGAGCCGCGATTCTCAA
TAACCGTGCATTCCAGATCGATATGAGGTCCACCCTCATGCACTCTGCAT
TGCTCTGTGCCTATGTAGTGTTTCTCTCATGGACCACTCTTCTAGAGGCA
TCGGTGCTGATGACTTCGGGCTTGCCCTAGAGGCTGTGCCGCACTGACAA
TCACGGCAACGAACAACAGCACATTCCAACAACGAACCATGATGATGATA
TCTCACTTCCAAGAAGCTAGGGTGATGTGAGAGGCGTGACCGCTCGTCCG
ACGAAAATTGAAAAAACTCGAAGATCTACAATGCAGCGGCTCCTAGTGAA
CTGCCCTCCCCTCAAAGCGTTCTACTGCTTTCGCCATGGATTGGATTGTT
CGCGTCCCGTCATGCTTTTCCACGATGAAATAAATTTTGCAAGAAGCTCA
TCTTGTGCTTCCCAGTATTTCGTCGAGTTCTTCATGCCGTAACTATAGGA
AAACTGGGGTGGTTGAACCCGCGCGAACTCAAGTAGTGGGGAAATCTCTT
CACCATCGCGGTCATGAAGGCCTTGTTTTGCTCTCGGCTACGATACCTGC
GATCTACATTCTAGTTACATATTTTACATGTATCCAGCATGTTGTGTTGA
TAAGTGGCAAACTTGCGAAGTATTTGTGCTCGTCTGTCCTCCCGGATGCT
TTTCCCCCTTTTTTTGCTTGGGGTGGCTGACGCTGCATATTCCCACCTCA
TGCTACAGGGCTGGTGGGTGAAGAATGTTGCACTGGAGTCCTTGGATACT
GCGGATGCTACACCACATGTTTTCGACTTCGGTTGACTTCTCGGGGATCA
AATAGTCGTTCATCCCTAAAAGGAAAACATTGTTCAACTAATGGACCCCC
CAACCAAAACCCATACAAGACTAACCACGATTGGTTGAAACAACAGGAGC
TTGCCGGACTCAAGGCACAAGCCGTGGACATCGGAGAGGAGGAAGCCAAG
GTGGAAGGGCACACGAGCGGGACTCTCGTCGCTTTGGTGAGAATGAATAA
TGGTAATCGAATTTCCCGCTGGGGTGGGCGCGCCGACGTGTGCTCAAGCC
CCGCTGCGTAGGTACGCACTCGATGAATTTCTAATTGATCCTTTGTACTC
CTTCTGCACAGCTTAATCCCAACTCAAGCCACAACACTACCGGCAAACCA
ACTCAACCAGGTGCGAGACGTACCAACACAAATAACACACATGCAACGCG
TAGTTCAGGACACGGTGCCAGTAGCAATGGAGCTAGCTGATGAGGCTGTA
TCCACCTCATTTGTTGGGGGTTGTCAGAGGGTATCAGATATGCAACGAGC
GTTGGCCAGCGTCCGTTAAGTGTGCCCTCGTTTTATATTTACTTCGGCAG
GTTGACTCGTGCAAGTTCGCTGAGTTGTTGCACGGAGGATCTTCTCCTCC
ACGAACGAATTCCTCACCCTACGTTGCACATGATCTCCGACGAAAAGATG
GTGTTTGTTGCTACGTGTACATACCGTCAAAGACATGGGACCTTCCACAG
GGACGATTCCGATCTTGGCTTGGGTGCCCAAAATGCCCACATGGGCCTCG
TTACTCTTCGCTTCACCTAACGCCACGCCGCCTCTCTTCTCCGCTTCGAC
GCGCCCCAGGCAGAGAAGGTGATCGTTTCATTTCAGCCTTATGCCGACCT
CTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17807:943..3246-

>mRNA_Ecto-sp13_S_contig17807.5406.1 ID=mRNA_Ecto-sp13_S_contig17807.5406.1|Name=mRNA_Ecto-sp13_S_contig17807.5406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17807:943..3246- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAAAGCGCAGCTGCAGAAGAACGTAGAAAAGGCGAAGCGAAGGGTGGA
GGGGAACGTGGATTCGACGAAGATGAGGATCGCCGAGTTCATCGACAGCG
ACGCCCGTCCGCGCGAGATGTCCGAAACCGCTTCATCAATATCGAAGGAG
CTTGCCGGACTCAAGGCACAAGCCGTGGACATCGGAGAGGAGGAAGCCAA
GGTGGAAGGGCACACGAGCGGGACTCTCGTCGCTTTGGCAGAGAAGGTGA
TCGTTTCATTTCAGCCTTATGCCGACCTCTGG
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