mRNA_Ecto-sp13_S_contig17803.5405.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17803.5405.1
Unique NamemRNA_Ecto-sp13_S_contig17803.5405.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17803.5405.1 vs. uniprot
Match: D7G049_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G049_ECTSI)

HSP 1 Score: 428 bits (1101), Expect = 9.410e-145
Identity = 207/228 (90.79%), Postives = 215/228 (94.30%), Query Frame = 1 
Query:    1 PPPLPQPACADAATSRSCTAATTAASPARRQASFDATVVGVGDLRTTAHTNAKQPLYNFLARCTGPDRRVGDAEYWRGLVEGWCEERGMGPVDLSTKQVSLFLRQMAEDPRLSRDYGVSMVKGCGALRFALEGRPFDWSRLDGDGGGSRLFHAGWRWMCVAPERDGCRTFTSCGRGANVEVEISKPSYAQVCEVAGIRVNGVDCTSFAAFKPALDVGSFSNPAGLCKV 684
            P P  +PACA AAT R CTAATTAASPARRQASFDATVVG+GDLRTTAHTNAKQPLYNFLAR TG DRRVGDAEYWRGLVEGWCEERG+GPVDLSTKQVSL+LRQMAEDPRLSR YGVSMVKGCGALRFALEGRPFDWSRLDGDGGGSRLFHAGWRW CVAPE+DGCRTF SCGRGANVEV I+KPSYAQVCEVAG+RVNGVDCTSFAAFKP LDVGSFSNPAGLCK+
Sbjct:  128 PSPALEPACAGAATCRCCTAATTAASPARRQASFDATVVGLGDLRTTAHTNAKQPLYNFLARYTGADRRVGDAEYWRGLVEGWCEERGLGPVDLSTKQVSLYLRQMAEDPRLSRYYGVSMVKGCGALRFALEGRPFDWSRLDGDGGGSRLFHAGWRWTCVAPEKDGCRTFASCGRGANVEVHITKPSYAQVCEVAGVRVNGVDCTSFAAFKPTLDVGSFSNPAGLCKM 355
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17803.5405.1 vs. uniprot
Match: A0A6H5JH41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH41_9PHAE)

HSP 1 Score: 427 bits (1098), Expect = 7.830e-144
Identity = 206/227 (90.75%), Postives = 218/227 (96.04%), Query Frame = 1 
Query:    4 PPLPQPACADAATSRSCTAATTAASPARRQASFDATVVGVGDLRTTAHTNAKQPLYNFLARCTGPDRRVGDAEYWRGLVEGWCEERGMGPVDLSTKQVSLFLRQMAEDPRLSRDYGVSMVKGCGALRFALEGRPFDWSRLDGDGGGSRLFHAGWRWMCVAPERDGCRTFTSCGRGANVEVEISKPSYAQVCEVAGIRVNGVDCTSFAAFKPALDVGSFSNPAGLCKV 684
            P L +P CADAAT RSCTAATTAA PARRQASFDATVVG+GD+RTTAHTNAKQ LYNFLARCTGPDRRVGDAEYWRGLVE W EERG+GPVDLSTKQVSL+LRQMAEDPRLSR YGVSMVKGCGALRFALEGRPFDWSRLDGDGGGSRLFHAGWRWMCVAPE+DGCRTF+SCG+GANVEV+I+KPSYAQVCEVAGIRVNGVDCTSFAAFKPALDVGSFS+PAGLCK+
Sbjct:  171 PALVEPVCADAATCRSCTAATTAAFPARRQASFDATVVGLGDVRTTAHTNAKQHLYNFLARCTGPDRRVGDAEYWRGLVEAWYEERGLGPVDLSTKQVSLYLRQMAEDPRLSRYYGVSMVKGCGALRFALEGRPFDWSRLDGDGGGSRLFHAGWRWMCVAPEKDGCRTFSSCGQGANVEVKITKPSYAQVCEVAGIRVNGVDCTSFAAFKPALDVGSFSDPAGLCKM 397
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17803.5405.1 vs. uniprot
Match: D7FRZ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ8_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 5.480e-11
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:  526 GANVEVEISKPSYAQVCEVAGIRVNGVDCTSFAAFKPALDVGSFSNPAGLCKVWGS 693
            G +  + + + SY Q+CEV G+RV+GV CTSFAAFKPALDVGSFS P   CK  GS
Sbjct:   79 GPSSMLPVQQVSYVQMCEVEGVRVDGVGCTSFAAFKPALDVGSFSIPEDWCKSPGS 134
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17803.5405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G049_ECTSI9.410e-14590.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JH41_9PHAE7.830e-14490.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRZ8_ECTSI5.480e-1160.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17803contigEcto-sp13_S_contig17803:1739..3371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size705
Hectar predicted targeting categoryother localisation
Exons3
Cds size705
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462922.7130544-CDS-Ecto-sp13_S_contig17803:1738..20621681462922.7130544-CDS-Ecto-sp13_S_contig17803:1738..2062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17803 1739..2062 +
1681462922.7254047-CDS-Ecto-sp13_S_contig17803:2505..27211681462922.7254047-CDS-Ecto-sp13_S_contig17803:2505..2721Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17803 2506..2721 +
1681462922.7335126-CDS-Ecto-sp13_S_contig17803:3206..33711681462922.7335126-CDS-Ecto-sp13_S_contig17803:3206..3371Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17803 3207..3371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17803.5405.1prot_Ecto-sp13_S_contig17803.5405.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17803 1739..3371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17803.5405.1

>prot_Ecto-sp13_S_contig17803.5405.1 ID=prot_Ecto-sp13_S_contig17803.5405.1|Name=mRNA_Ecto-sp13_S_contig17803.5405.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=235bp
PPPLPQPACADAATSRSCTAATTAASPARRQASFDATVVGVGDLRTTAHT
NAKQPLYNFLARCTGPDRRVGDAEYWRGLVEGWCEERGMGPVDLSTKQVS
LFLRQMAEDPRLSRDYGVSMVKGCGALRFALEGRPFDWSRLDGDGGGSRL
FHAGWRWMCVAPERDGCRTFTSCGRGANVEVEISKPSYAQVCEVAGIRVN
GVDCTSFAAFKPALDVGSFSNPAGLCKVWGSKVL*
back to top

mRNA from alignment at Ecto-sp13_S_contig17803:1739..3371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17803.5405.1 ID=mRNA_Ecto-sp13_S_contig17803.5405.1|Name=mRNA_Ecto-sp13_S_contig17803.5405.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17803:1739..3371+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCCGCCCCTCCCGCAGCCGGCGTGCGCCGATGCTGCTACCAGCCGCAG
CTGCACTGCTGCCACTACCGCCGCTTCCCCAGCCAGACGACAAGCGAGCT
TCGACGCCACCGTCGTGGGCGTGGGGGATCTGCGGACGACCGCCCACACG
AACGCCAAGCAGCCTCTCTACAACTTCCTGGCCAGGTGCACGGGGCCAGA
CCGTCGCGTCGGAGACGCCGAGTACTGGAGGGGCCTCGTGGAGGGTTGGT
GCGAGGAGAGGGGTATGGGTCCGGTCGACTTGTCCACCAAGCAGGTGTCG
CTGTTCCTGCGGCAGATGGCAGAGGTAGGTGTTGCTGCTGACGCCGGCTC
GGCCGCTTGGCAGAGGCGTTGGGTGCGTGAGATCCGGAAAAAGAGTGGAG
GCGTTCTTCTTCCGTTTGGTTGCCTCAAGTGGTACCTACCATACCGTTTG
TCACCAAAGCCACGAGGTTGAATGTAGTCTTGTTTATCAATGGGTCTTCG
CAATAACATGCGTCTGAGCTTGATGGTGTGCAGCGCTGTTGAACAAAAAG
AGCACGTACCTCCCCCCCCCCCCCCCCGCCGTACACCATGATCAAGAGAG
GCGTCTGTGGAGACTCGGCAACGACCTTCCCCTCTCTCTCGACTTGCGAC
CAGCCGCTAGATACAGCTTTGCGTCGCCATTCGTTTTCCATAACGCCGGT
TTCAAGGTTCCAATGCTACGTGGCGGCTTGCTGTTTCTTGGCACGACTCT
CTCTTCCTCGCGGCTAGGATCCAAGGCTTTCGAGAGACTACGGCGTGAGC
ATGGTGAAAGGGTGCGGGGCGTTGCGATTCGCCTTAGAAGGCAGACCGTT
CGATTGGTCCCGTTTGGACGGCGACGGCGGAGGGTCGAGGTTGTTCCACG
CCGGATGGAGATGGATGTGCGTGGCGCCAGAGAGGGACGGCTGCCGCACT
TTCACGTCGTGTGGTCGAGGGGCGAACGTAGAGGTGAAGCATACACAGCG
CACCCCCGCATGCATGCCGACATTGTAGAATACTCCAGATTACCACGACT
CGGTGTTGCTGCGTAGGCATCCTCGGTAAACTGCTGCAACTTTTGAAATG
AGTACAGCTGCAACTCATAAGCACCTCTCCCTGTAAGCACCTCCCCCTGT
AGGGGAACGGTGCGTGGATTGGTTCTAGTGGCTACGGATACCTAGTTTTA
TTTGTGTAGGGATTGTGTGCGTCTGGCGTTTCGCGTCGAGGTGCAAGGAA
CTTGTTGTTTTAGCTCACCCTTCCTCTTAACCCGTTCTTCCAAAGCAAGC
GCCATCCGACGCATGCCTCTTGTTTTCTTAGAGAAAGTGAGGCGTAAACA
GGCGCAACAAGAGTGGGTGTGTGCTCGTTTGAACAACTCGCTTGACATTC
TGTTCGATCTCTAACTCTCCATCTCTCTCCCTCCCCCCCTCCCCCCGGCT
GTGTTTCCGATGATCTAGGTCGAGATTTCTAAACCCTCCTACGCTCAGGT
GTGCGAGGTCGCGGGAATCCGGGTAAACGGGGTGGACTGCACATCCTTTG
CGGCCTTCAAGCCAGCCTTGGATGTCGGCAGCTTCTCCAACCCCGCAGGC
TTGTGCAAGGTGTGGGGCTCAAAAGTTTTATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17803:1739..3371+

>mRNA_Ecto-sp13_S_contig17803.5405.1 ID=mRNA_Ecto-sp13_S_contig17803.5405.1|Name=mRNA_Ecto-sp13_S_contig17803.5405.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=705bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17803:1739..3371+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCCGCCCCTCCCGCAGCCGGCGTGCGCCGATGCTGCTACCAGCCGCAG
CTGCACTGCTGCCACTACCGCCGCTTCCCCAGCCAGACGACAAGCGAGCT
TCGACGCCACCGTCGTGGGCGTGGGGGATCTGCGGACGACCGCCCACACG
AACGCCAAGCAGCCTCTCTACAACTTCCTGGCCAGGTGCACGGGGCCAGA
CCGTCGCGTCGGAGACGCCGAGTACTGGAGGGGCCTCGTGGAGGGTTGGT
GCGAGGAGAGGGGTATGGGTCCGGTCGACTTGTCCACCAAGCAGGTGTCG
CTGTTCCTGCGGCAGATGGCAGAGGATCCAAGGCTTTCGAGAGACTACGG
CGTGAGCATGGTGAAAGGGTGCGGGGCGTTGCGATTCGCCTTAGAAGGCA
GACCGTTCGATTGGTCCCGTTTGGACGGCGACGGCGGAGGGTCGAGGTTG
TTCCACGCCGGATGGAGATGGATGTGCGTGGCGCCAGAGAGGGACGGCTG
CCGCACTTTCACGTCGTGTGGTCGAGGGGCGAACGTAGAGGTCGAGATTT
CTAAACCCTCCTACGCTCAGGTGTGCGAGGTCGCGGGAATCCGGGTAAAC
GGGGTGGACTGCACATCCTTTGCGGCCTTCAAGCCAGCCTTGGATGTCGG
CAGCTTCTCCAACCCCGCAGGCTTGTGCAAGGTGTGGGGCTCAAAAGTTT
TATAG
back to top