mRNA_Ecto-sp13_S_contig178.5402.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig178.5402.1
Unique NamemRNA_Ecto-sp13_S_contig178.5402.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig178.5402.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 274 bits (700), Expect = 6.920e-77
Identity = 142/221 (64.25%), Postives = 164/221 (74.21%), Query Frame = 3 
Query: 1323 DEWGPAVASGDATKLAELVLLWSGLKPERALSILRDCVSVLEKEVALSTLGSSSRLATPTTPGRASSSCLSALIVALNETCDGTSWYTSTKELQLTSLEFCTACRNYPTVHLMVNTETPRRMLAAADIPPPHPSRLGWTRVPRIRARRVTWNIQTEEEFRTPIFALTDVDYLEFGRAFEGSLDAVVWLRRLKTIEFQWESPFNGPIHLVKWPACLQRLVFG 1985
            D+WG AVA+GDATKLAELVL+WSG +PE ALS+LR+CV +LE+E A S   SS   +   T G   SSCL  L VALNETCDG SWYTSTKELQL SLE C ACR+Y T+HL V+  TPRR+LAAAD P PHP RL  TRVPR+RARR TWN+ T    RT IFA  DVDYLEFG+AF GSLDA+VW RRLKTIEF+  SP N  +  V WPA L+++  G
Sbjct:   68 DKWGLAVATGDATKLAELVLVWSGSRPEAALSLLRECVLLLEEEAAFSVPDSSPLQSPSCTLGPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEFRQSSPLNRLLDGVSWPASLRKVCLG 288
[Close]
BLAST of mRNA_Ecto-sp13_S_contig178.5402.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 1.090e-64
Identity = 108/155 (69.68%), Postives = 123/155 (79.35%), Query Frame = 3 
Query: 1527 CLSALIVALNETCDGTSWYTSTKELQLTSLEFCTACRNYPTVHLMVNTETPRRMLAAADIPPPHPSRLGWTRVPRIRARRVTWNIQTEEEFRTPIFALTDVDYLEFGRAFEGSLDAVVWLRRLKTIEFQWESPFNGPIHLVKWPACLQRLVFGGE 1991
            CLS+LIVALNETCDGTSWYTSTKELQ  SLEFC ACRNYP +HL V+ + PR +LAAAD PPPHP RL WTRVPR+RAR VTWN++   E   PIFA+TDVD LEFG  F+GSL+AV W RRLK IEF + SPFN P+ L+KWP  LQ LV GG+
Sbjct:   14 CLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLKMIEFLYTSPFNQPLELIKWPESLQHLVLGGD 168
[Close]
BLAST of mRNA_Ecto-sp13_S_contig178.5402.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 6.740e-62
Identity = 210/395 (53.16%), Postives = 243/395 (61.52%), Query Frame = 3 
Query: 1527 CLSALIVALNETCDGTSWYTSTKELQLTSLEFCTACRNYPTVHLMVNTETPRRMLAAADIPPPHPSRLGWTRVPRIRARRVTWNIQTEEEFRTPIFALTDVDYLEFGRAFEGSLDAVVWLRRLKTIEFQWESPFNGPIHLVKWPACLQRLVFGGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLILGCFAFXXXXXXXXXXXXXXQL--TFGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELPNDRMGMNSSXXXXXXXXXXXXXXXXXXXXGFFRQSLQGLGTWMPNLEALRILEWDIDNIPNESLLVRGIEWPNGLRELTVFKESILDGVVIPSTVQVYRPY 2705
            CL ALIVALNETCDG SWYTSTKELQL SL+FC ACRN  TVHL V+ + PRR+LA+AD PPPHP RL WTRVPR+R+RRVTWN+ T  + RTPIFA+TD++YLEFG AF  SL+AV W   L+T+EF  +SPF+  I LV+WP  LQ + FGG+                         XXXXXXXXXXXX         XXXXXXXXXXXXXX    TFG                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    E   + M + ++                      FRQSLQGLGTWMPNLE L +L +    + + + L R IEWP GLR LT+ + + +DGV IP  VQV   Y
Sbjct:   51 CLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFLQNVTFGGDFNQPIERVKFPASLQQLIFRTSSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFGN----------------------RLNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWCDEFAGNGMVIFANFDQPIGSSVGPALLRRLVLGHMFRQSLQGLGTWMPNLEVLHLLHYHGSGLGDSNFL-REIEWPKGLRHLTLLEGTSIDGVDIPLAVQVLFAY 422
[Close]
BLAST of mRNA_Ecto-sp13_S_contig178.5402.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 7.560e-61
Identity = 130/222 (58.56%), Postives = 151/222 (68.02%), Query Frame = 3 
Query: 1332 GPAVASGDATKLAELVLLWSGLKPERALSILRDCVSVLEKEVALSTLGSSSRLATPTTPGRASSSCLSALIVALNETCDGTSWYTSTKELQLTSLEFCTACRNYPTVHLMVNTETPRRMLAAADIPPP-HPSRLGWTRVPRIRARRVTWNIQTEE-EFRTPIFALTDVDYLEFGRAFEGSLDAVVWLRRLKTIEFQWESPFNGPIHLVKWPACLQRLVFGGE 1991
            G AVASG ATKLAELVL+WS  KPERALSI R CVS+LEKE A S  GSS      T PG   SSCL+A++VAL+ETCDG SWYTSTKELQL SL FCTACRN+ TVHL V+   PRR+LAAAD PPP   + +  TR P   A     +  +   E    +FA+TDVD+LEFG  FEG+L+AV W R LKTI+    S F  PI L++WP  LQ L FG E
Sbjct:   71 GSAVASGAATKLAELVLVWSVSKPERALSIARTCVSLLEKEDAHSASGSSPLXXXSTAPGPGRSSCLNAIVVALSETCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVDEHIPRRLLAAADAPPPASEAAVSDTRAPTHSASCDVEHADSSGIEEPCTVFAMTDVDHLEFGWDFEGNLEAVAWPRWLKTIDLHPWSNFGKPIDLIEWPDSLQTLEFGWE 292
[Close]
BLAST of mRNA_Ecto-sp13_S_contig178.5402.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 1.030e-57
Identity = 159/446 (35.65%), Postives = 205/446 (45.96%), Query Frame = 3 
Query: 1356 ATKLAELVLLWSGLKPERALSILRDCVSVLEKEVALSTLGSSSRLATPTTPGRASSSCLSALIVALNETCDGTSWYTSTKELQLTSLEFCTACRNYPTVHLMVNTETPRRMLAAADIPPPHPSRLGWTRVPRIRARRVTWNIQTEEEFRTPIFALTDVDYLEFGRAFEGSLDAVVWLRRLKTIEFQWESPFNGPIHLVKWPACLQRLVFGGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLILGCFAFXXXXXXXXXXXXXXQLTFGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELPNDRMGMNSSXXXXXXXXXXXXXXXXXXXXGFFRQSLQGLGTWMPNLEALRILEWDIDNIPNESLLVRGIEWPNGLRELTVFKESILDGVVIPSTVQV 2693
            AT+LA+LVL+WSG +PE ALSIL+DCVS+LEKE A S     +    PT PG + SSCL+AL++ALNETC+G SWYTSTKELQL SLEFC ACRNY T+HL V+ + PRR+LA AD PPPHP  L  TRVPR+RARRVTW ++   E   PIFA+TDVD L+FG   E SL+A+    RL      W+      +H         R V+                                        V+I   + +                                                                                        +  ND + +  +                      F+QSLQGLGTWMPNLE LR+ ++   +  N+SLL+ GI WP GLR+L V++ + +DGV IPSTV+V
Sbjct:   56 ATRLAQLVLVWSGSEPEPALSILKDCVSLLEKEFAFSAPAFPAVPLLPTMPGPSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCRTRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKFG---ETSLEAL----RLWHGRDGWKRSSFSFLHY-----STSRSVWSS--------------------------GQHLCRRLNSVAVVIARAYDWICDRCRR---------------------------------------------------------------------------------KRDNDVLVLRPTHRQPWLAYVFASTPLGDD----FKQSLQGLGTWMPNLEVLRLFDFRDPDFGNDSLLL-GIGWPTGLRQLAVYECTKMDGVTIPSTVEV 377
[Close]
BLAST of mRNA_Ecto-sp13_S_contig178.5402.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 1.320e-51
Identity = 103/157 (65.61%), Postives = 121/157 (77.07%), Query Frame = 3 
Query: 1506 PGRASSSCLSALIVALNETCDGTSWYTSTKELQLTSLEFCTACRNYPTVHLMVNTETPRRMLAAADIPPPHPSRLGWTRVPRIRARRVTWNIQTEEEFRTPIFALTDVDYLEFGRAFEGSLDAVVWLRRLKTIEFQWESPFNGPIHLVKWPACLQRL 1976
            PG  S++CL+A+ VAL ET DG SWYTSTKELQL SLEFC ACR Y T+HL+V+   PR +LAAAD PP HP RL   RVPR+RAR VTWN+ T  E R+PIFAL D+D+L+FG AFEGSL+AV W RRL++I F   SPFN PI LVKWPA L+RL
Sbjct:   29 PGPTSNTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRRLESIAFHNFSPFNTPIDLVKWPASLKRL 185
[Close]
BLAST of mRNA_Ecto-sp13_S_contig178.5402.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 2.020e-51
Identity = 194/403 (48.14%), Postives = 223/403 (55.33%), Query Frame = 3 
Query: 1509 GRASSSCLSALIVALNETCDGTSWYTSTKELQLTSLEFCTACRNYPTVHLMVNTETPRRMLAAADIPPPHPSRLGWTRVPRIRARRVTWNIQTEEEFRTPIFALTDVDYLEFGRAFEGSLDAVVWLRRLKTIE---------FQWESPFNGPIHLVKWPACLQRLVFGGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLILGCFAFXXXXXXXXXXXXXXQLTFGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELPNDRMGMNSSXXXXXXXXXXXXXXXXXXXXGFFRQSLQGLGTWMPNLEALRILEWDIDNIPNESLLVRGIEWPNGLRELTVFKESILDGVVIPSTVQ 2690
            G A  SCL+A+IVALNET DG SWYTSTKE QL SLEFC ACRN+ T+ L V++ TPRR+LAAAD PPPHP RL  TRVPR+RARRVTW+I T    R  I+++ D D LEF RAFE SL+AV W RRLKT+E         F  +S F+ PI  V WP  L++L FG     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         XXXXXXXXXXXXX ++ FG                                                                     E+  D + + S    X                  FRQSLQ LGTWMPNLE   +L    D+   +S L RGIEWP GLR+L V + S L GVVIPSTV+
Sbjct:    6 GPARDSCLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVAWPRRLKTVEVSGIAEVAKFHDKSLFDQPIAGVVWPDTLEQLTFG-LFLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVCFG------------------------------------------------------------------VRQEVLGDVV-VTSKFNRXIGASAWPKAMHRLTLGQNFRQSLQELGTWMPNLETFHLLHHIHDSGTEDSFL-RGIEWPKGLRQLAVCRLSSLAGVVIPSTVE 339
[Close]
BLAST of mRNA_Ecto-sp13_S_contig178.5402.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 1.590e-42
Identity = 260/402 (64.68%), Postives = 285/402 (70.90%), Query Frame = 3 
Query: 1563 CDGTSWYTSTKELQLTSLEFCTACRNYPTVHLMVNTETPRRMLAAADIPPPHPSRLGWTRVPRIRARRVTWNIQTEEEFRTPIFALTDVDYLEFGRAFEGSLDAVVWLRRLKTIEFQWESPFNGPIHLVKWPACLQRLVFGGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLIL----------------------GCFAFXXXXXXXXXXXXXXQLTFGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELPN-DRMGMNSSXXXXXXXXXXXXXXXXXXXXGFFRQSLQGLGTWMPNLEALRILEWDIDNIPNESLLVRGIEWPNGLRELTVFKESILDGVVIPSTVQVYR 2699
            CDG  WYTSTKELQ  SLEFC ACR Y T+ L V+ +TPR +LAA D P PH  R   TRVPR+RARRV WN+ T  E ++PIFAL DV  L+FG AFEGSL++V W +RLK I+F W S FN PI  V++P  L  L     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                          G  + XXXXXXXXXXXXXX     G   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  E    D   M S  XXXXXXXXXXXXXXX      FRQSLQGLGTW+PNLE    L+    +   +SLL RGIEWP GLR+L VF++S LDGV+IPSTV+V R
Sbjct:    2 CDGKRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAPSPHSKRPCRTRVPRLRARRVIWNMPTATELKSPIFALKDVVRLDFGPAFEGSLESVAWPQRLKEIDFSWGSLFNQPIEGVEFPPSLLELRLSDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYRSRXXXXXXXXXXXXXXXXXXXGEAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHESQGFDHAIMFSEFXXXXXXXXXXXXXXXLTLGHKFRQSLQGLGTWIPNLEIFHFLDHSNGSGDEDSLL-RGIEWPTGLRQLAVFRDSRLDGVIIPSTVEVSR 402
[Close]
BLAST of mRNA_Ecto-sp13_S_contig178.5402.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 7.480e-37
Identity = 89/156 (57.05%), Postives = 101/156 (64.74%), Query Frame = 3 
Query: 1509 GRASSSCLSALIVALNETCDGTSWYTSTKELQLTSLEFCTACRNYPTVHLMVNTETPRRMLAAADIPPPHPSRLGWTRVPRIRARRVTWNIQTEEEFRTPIFALTDVDYLEFGRAFEGSLDAVVWLRRLKTIEFQWESPFNGPIHLVKWPACLQRL 1976
            GR  SS    LI+ALNE CDG  WYTSTKELQL SLEFC ACR Y  + L V+ +TPR +LAA D PPPH  R   TRVPR+RARRV WN+ T  E RT +FAL DV+ L FG  F GSL+AVVW   LK I F + S FN         A LQ+L
Sbjct:   11 GRRCSSGSKDLILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAPPPHTKRPCRTRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWPPPLKQIIF-FSSEFNQXXXXXXXXASLQKL 165
[Close]
BLAST of mRNA_Ecto-sp13_S_contig178.5402.1 vs. uniprot
Match: D7FTA7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA7_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.050e-25
Identity = 63/117 (53.85%), Postives = 70/117 (59.83%), Query Frame = 2 
Query: 1436 LCAGKGGCAFDSGFFFPSCDPDYAWTRQ*LVLERPHRCFERDVRRDELVHIDQGAAADVLGILHRVQKLSDRALDG*HRNST*DAGRCRYPTPSPEPAGLDTRAKDTSAPRDVEHTD 1786
            L  G+GGC F S FFFPS      WT   LVLE PH C ER VRR+ELVHI+  AAA +LG LH V+  SD ALD    ++T  A  C  P P PE    DTRA   SA RDVEH D
Sbjct:    3 LIVGEGGCVFSSRFFFPSFALLCPWTHAQLVLEGPHGCLERGVRREELVHINHRAAAGILGALHGVKTPSDVALDSRRTHATQAARCCGCPLPGPEATVWDTRAAAESASRDVEHPD 119
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig178.5402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPY7_9PHAE6.920e-7764.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH81_ECTSI1.090e-6469.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRF9_9PHAE6.740e-6253.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL5_ECTSI7.560e-6158.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2S9_ECTSI1.030e-5735.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZZ4_9PHAE1.320e-5165.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUA5_9PHAE2.020e-5148.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYF0_9PHAE1.590e-4264.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRK5_9PHAE7.480e-3757.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTA7_ECTSI1.050e-2553.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig178contigEcto-sp13_S_contig178:26962..34183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3218
Hectar predicted targeting categoryother localisation
Exons4
Cds size1491
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig178.5402.1prot_Ecto-sp13_S_contig178.5402.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig178 27463..32957 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462922.3507395-UTR-Ecto-sp13_S_contig178:26961..274621681462922.3507395-UTR-Ecto-sp13_S_contig178:26961..27462Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig178 26962..27462 -
1681462922.3998463-UTR-Ecto-sp13_S_contig178:32957..341831681462922.3998463-UTR-Ecto-sp13_S_contig178:32957..34183Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig178 32958..34183 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462922.360748-CDS-Ecto-sp13_S_contig178:27462..286701681462922.360748-CDS-Ecto-sp13_S_contig178:27462..28670Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig178 27463..28670 -
1681462922.3738785-CDS-Ecto-sp13_S_contig178:31525..317111681462922.3738785-CDS-Ecto-sp13_S_contig178:31525..31711Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig178 31526..31711 -
1681462922.3822556-CDS-Ecto-sp13_S_contig178:31911..319711681462922.3822556-CDS-Ecto-sp13_S_contig178:31911..31971Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig178 31912..31971 -
1681462922.390688-CDS-Ecto-sp13_S_contig178:32920..329571681462922.390688-CDS-Ecto-sp13_S_contig178:32920..32957Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig178 32921..32957 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig178.5402.1

>prot_Ecto-sp13_S_contig178.5402.1 ID=prot_Ecto-sp13_S_contig178.5402.1|Name=mRNA_Ecto-sp13_S_contig178.5402.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=497bp
MGGRAFSSSARPDLAAENWAGGLLSHVLRMQNDEWGPAVASGDATKLAEL
VLLWSGLKPERALSILRDCVSVLEKEVALSTLGSSSRLATPTTPGRASSS
CLSALIVALNETCDGTSWYTSTKELQLTSLEFCTACRNYPTVHLMVNTET
PRRMLAAADIPPPHPSRLGWTRVPRIRARRVTWNIQTEEEFRTPIFALTD
VDYLEFGRAFEGSLDAVVWLRRLKTIEFQWESPFNGPIHLVKWPACLQRL
VFGGEFNQQIEHVKFPASLQHLSFGSYFNQPIEGVLWPSSLKVLILGCFA
FNKPVERVAWPTSLRQLTFGGGFNQPIERATFSASLQRLTFGEQFDQPIE
RVEWPDSLQVLIFGENFNQPVDNVRWPASLQELTFGDYLELPNDRMGMNS
SFNQYISDSVWPASLRRITLGGFFRQSLQGLGTWMPNLEALRILEWDIDN
IPNESLLVRGIEWPNGLRELTVFKESILDGVVIPSTVQVYRPYLYV*
back to top

mRNA from alignment at Ecto-sp13_S_contig178:26962..34183-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig178.5402.1 ID=mRNA_Ecto-sp13_S_contig178.5402.1|Name=mRNA_Ecto-sp13_S_contig178.5402.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig178:26962..34183- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAGAGAGAAAACAGCCAGACAGAGAAGCAGAGAAGGGGTACTCGTATG
GTTAGCATGCTGTACTGCAGCGGATAGACCATTGACCACGCGTCCTCGAG
AGGACGGAGCATCGTTGCCACAGGACGGATCAGTGGTGGCCAATCGTGCC
CTCCTCTTTGCCAAAGGTGGCTCAATAGTGTACTTCTCCCTACATCTATC
CATCGACACCTTTTCCCGCCTTTTTTACACTTCGTGTACCCCAGTACAGC
TACCGTCTTATCCTGGCTATTCCATGCTTCAAACATCACCCTGTACCTTC
CTTCTACTTTGCCCAGCTCACTCATGGCACATTTCCCCCTCCTTCTTGTA
CAACGAATATTCCGCAACTAAATGAACCCGGTCTTGCAACTCGGAAACGC
AGTTATATTTGAATTTACCGTCTTTGTCATCTTCCTCCCTCAACCTTTGC
CTATGTTCTCGATGGCCCAAATGCCCCCAGTCCAAAATTAGATGTTCGGC
TTAGTCCCTTTATCCAGTGGTTCATGAGTGGTAATCCTCGAACCGTGTTC
CTTCTTTCAACATTCCGTACACATCTTGAACCTCGTTGTCCGTGGTTTCT
TTTGGTTCAATTGTGTTCTCTTTCGACAAAAACACGAGATATCCCCTCCT
TGAAGCCTTCTAGACCTTCCATTTCCAGTGCATCAATTTTGTCGATTTCG
AACTCCTTCCGTACGTCATCTACAACCTTACCCACTCTGTGGGTTGTCTA
TTGTCAAGCTATGCAATGCCCTGTTTTGTACTCTTGACAGGTTTGGCAGC
GACTGCATCACTTGTCTTGTAAAAACATGTTTTTACCTTGCTCTTGGCCG
TGGGTGACGCCTACGTTCCACACCTGCGTAAAATTCATGCCGCCATCTTC
GACAAATCATGGCGTATCTACGAGATTGAGACTTTTCCGTTTTCGTCTGT
CTCCCGCGGGTAGGGGAGTGGGGGGCGTTGTCTACGACCGGCTTCTGTCA
CTCTTTGTGCTTTCAGCGTTTGACAGTCCAAATTACAGCTCCTGTTTTCT
GTTTTCGTTGATGGCGGCGGTTTGCTCCGTACTGTCTGCACTTTCTGTTC
GAGTCTATCGCCATTTCTTCAGCAAGTCTCAGCGGCATACTTGCGAACCC
TCAAATATGCCCCCTCCTCTCTTTTCGCGTTGTTTCCTTTTCGGCAACTC
TGACTACGAATAACGCGTACAGCATCATGGGAGGACGCGCCTTTTCGAGT
TCCGCAAGGCCTGGTGAGTTTAGGGCTACGCTGATATTCGTGCTAAAGCC
ATGTTTCGCGTTTTTTCCCCTCTTGCTCACACGGATAGGATTGGAGACGC
CGCCACAGGCGCAGAAATTTCCCGTTCGATCTCTTGTGGGTTGTCTGTTT
GATGAGCAGGGCGGGCTGTAGGCGTGTCATCGCAGCGTGACACGCGTGTA
GGTGGAGGTTTTGCCCGTCTCGACGTTCTCCCGAATGCTGCTCGTTCGAT
CGTTCCTTTGTTTTGTACTTGCGTCCCGCCAACCCTCAAGCCGAATGCTG
TTTCCAGATTGCAACGTTACCCTCAAGGGGACTCGAATGGAAACTTGTTT
GTGGGCGCGACCGCTGGCGCATTCATTTTTTCCCTAGCCAAAGTGTTTGA
TACCGAGCAATGCAGTGCAAGTGCTTCGTTGGTGCTGGAACATGCCATCT
GACAGTTGATTCATATAAATTGTGGTGAGTTTGACTATGTTGTCTTCGGT
GGCGCTCTACAGTTGACAGCTCTACCACCAGCAACATTTTGTGTTCTCGC
GGATGGCCACGTCACACGCATCGCACTTGATCAAGCGCCCTGTAAACATC
CGCGGCCGGCGGTGATCTCAGGCAATAGAGCAGCGCATGCAAAGAATCGT
ATAGATGTTGCTGACAGTGTATGGCTTCTGACATGTACGAAAGAGTGTGG
GCCCTGATTGTGTGACAAAGCTTGTCCTCTGGACCATATTCAAGGAATTG
GTGCGTTCGAATCGCTTTCGAAGGGATCGGTGTGTGTGGAGTTGAGGAGA
CTCGGTTACACATTGGAGAGATTTATTTTCTGTCTCATAAGATGTTGAAC
CCTGAGGCCCGCAGACCGGGATGTGTCACACACCATGGCCGCCCCAACCC
AATCCAACCGGCACCCTTCACCCCTGACCCTTACCATAACCCTCACCCAC
AACCAACGCAAGACCTGGCGGCCGAGAACTGGGCGGGAGGGCTGCTCAGC
CATGTTCTCCGAATGCAGAACGGCAAGAGGACGCTGGAGAGGAATCGACC
GTTAGAGCCAACCCCATGCTCGACCAATCCGAAGCCCTTAGCCCTAAGGA
TTCCCAAAAAAAGTTACGTGTAAACACCAATGAGGGTTGATGTTCAGTCT
TTACGTTCCCCTTTAACCCGTGCTGATGCAGCGTCTCCCTGTGACAACAC
CGGAAAATTAAAATTTCCGCAGATGAATGGGGTCCGGCCGTGGCGAGCGG
CGACGCGACCAAGCTAGCCGAGCTGGTGCTGCTTTGGTCCGGTTTGAAGC
CCGAGCGGGCTCTGTCGATTCTGAGAGACTGCGTCTCTGTGCTGGAAAAG
GAGGTTGCGCTTTCGACTCTGGGTTCTTCTTCCCGTCTTGCGACCCCGAC
TACGCCTGGTGGGTTCCTTGTTTTCGTGTGAAGTTCCTCAATTTGCCTGC
GCGCACTCTCACTCACCGAACGAGACGCTACGAGTCTTAGTCTTGCGTGG
TGGCTCATAACAGCTGATTCGTGTTCGGTTTTTGCAGTGAGGCGTGCAGC
GGTTTTGGGGATAGTTTTTCGCCAGTATTAAATGTAGTTTCGTGATTGTA
TACTTGACGTTTCGTCCCCAGATTGAGCGAGCATTCCGACCGTCGTTACG
ATATACGATATACAATTGGCGGCCTGTTATTGACTTGACTGATTCACCCC
AGAGCGAAATAGCGGCCGGTTTGTCGTTGTTGTTGTTTCAAGTTAGTCAA
GAAACATTGGCCACTTTGCCTAACAAAAGTAACACGGTGCGATGAATGCT
CAGCTTGGTAGCCGCGTTCTAAGGGTTCACCACGCCCTACCTGTACATTC
TAAAACCGTACGGCCTTGAATACAAAACATGAAAGTTGTTGGCCGCGTTG
TCGTACACGCGGACAATGCTCCATGGTTGTCTCCAAGTAGATGCTACCCA
TCAAAGGCCTTCCTCCACTAGCCTCTGCAGCGGTTGGCTCTAAGGAGCGC
ATGTCAGTGGGATCCTCAACAACGCCTTTTGTGGAGTACGCCGGGGTAGG
GTTGGTAACGTGTTTTTTCAAATGTTACTGGAAACTGCAAGACTGAAGAA
TTTCAGGTGGTCCGCACGCCACAACACCAACAAATCACAAGGTCACGACT
CGGGATTTCATCCCGAAGCCCCACACTGATTTGCCAAGATCACGGAGTAC
CGTTTTGTGGCGGCTGAAGCTGAGCGTACCGCGACCAGGCTTCTCGAGTC
GGTGTTGCACCGACTTCTATCGCCCCCGACCTCCCTTACGAGCAGTCGCA
CGAGATACTCCCGCACGAAGGGACCAACGGGCTTCATTGACTCGACTGTC
GGACGGACCTTGTGCGGAATCACATCAGCCATAGACTCGGATTAACATTA
ACCATCACCATGGATCCAACCCCAAGACCCGGACACCGACAGCACTGCGA
CACACCGAGGTCTCACTCCTTTCACCTTCTTCTGTCCTGCGACCATACAC
AACGAAAACCGCGTGCCAAAAACACTGACTCCACCGCCGCGTCAGCGTCT
CGCGAAAGTGCCAAGGTCTTAACATAAACGCCCCTTGTTGGCATGCAAAT
ATTACTTTTCCTTTGTCTCGCACGACCATGCACACACACACCTTGGTGTA
CCGATAATAGAAACATCGCACACAAGAATGGTGCATATGTCTTATTACCT
AGTACGATTTATCCACCTCTCACAAAGGAACGTCGAGGAAAGGCAGTACA
CCATTGACGCGCACTCCGCCCCTGTGCTCGCTGCTGCGCGTGGTGTTGCG
GATGCTGCCGTATGTGCAGCCGCGTAATCAATTCAAATCGGAAGCAGTTG
GGTGAGCCTTTGGTTGAAACGACGACGAATGGAAACGGGGTGGCAGACAA
AGGCAAGACCGGACTCGCGCAGTCAAATCACGGTGCCCTCCGCTTACACA
AAAGGGTACTCGATGTCCTTCGCCAATCTGGGAGGGGAATCGGGTTCAAT
TTCCCGAGTCACTTGTTCGTTGCCGCTTCGTGTCACTCCACCCCACCCGG
TTTTATATGTTCTGTCCTTGGCTGTTCCAAAAACCCATAACCGCGGGCTC
AAACATGCTCTGGCAACCAGCAACGCGTCTCAGCTACGGGCCTCTTCATT
CCTAGCCGCTTTCCACTCTTGTGTTTCCGACACGTAGTTGTGCCCCCCTT
GGCACACGCTCGAGGTCATCGGTGTTGCACTCTCGAGGTTATCGGTGTTC
CACGTTTACGCATGCGAACCTACGGGATACCTGAGGGGGTGCCCACGACA
CGGAATTATATATTTGTCGGTGGAGGCATATCGGCTTGGCGAGACACGAG
CATTGAAAATAAACCTTGGGTCTGGGTGACTGGGCAGCGAAAAGCACCAA
AATCAAATCCGAATCAGCTCTTCACCCGTACCGTTTCAGATTGGTTCGGC
CGCTTGTGTGCTCGCAAGCGCAACATGTTTGCCTCTTGACCGATCTTGCA
GAAGATCGGAAGGAAAATTCGTTCACAAAAAATGGGAAACGGAATCGTCA
TGGGCAAACCATGACCAGGATCATGGTTTGGCCCAAGATTACCCCCCTCC
AAAGACCGGTGTAGCGACTCATGTGTACTTAGTTTCCGAACGTTAGACGA
TTTCCCTCTTCAACACGTTAGTTCCGTTTAACCCACACGTGCAGCTGTTG
CTCTAGTCTTGCAGCGGTAGGTGATCACTGGTGCATGCAGACGATTGTTT
TTTCGCGCAGTCTCAACTCACTGTTTGCCCCAAACGAGTTTGCATAGCAT
TACGCTCTCGGTCATTGCACTAGATTCCGTCTATGAGATGTTCTGCCTAT
CCAGTTGCAGCTGTAGAGTCAGATAGTTGAGGCTACAGCGCCCCCGTCGG
GACACTTCCAGTCGAAACCCTCACGGTTTGGTTTTGAGGCAAACGTTCGG
GTCCGCTACGCATCGTGCGCCCGTTCAATCATGGCGTCCCCGGCATTGGT
TTGTCCTGTTGGAACACTGACTGTTGTCATGCTTTCAGAAAATCCGGTAT
TGATACCTTTTTGCCAAATCTATTGACGCAAAGATATCCAAGGTTTTTCG
CGTAGTGCGGCAAGTTGACCGTGTTCTCCTTAGGATGTGTGATAGCCGTG
GAACAGCTACCGATTCCACGTTTCACAATCTGTATTGGTTTGGAAAGACG
CACCTTTTGTGACTAAGCTCATCTATACGCCTTTACACCGATACACCGTG
CGTCGTTCAGCAGGACGCGCCAGTAGCTCGTGCTTGAGCGCCCTCATCGT
TGCTTTGAACGAGACGTGCGACGGGACGAGTTGGTACACATCGACCAAGG
AGCTGCAGCTGACGTCCTTGGAATTCTGCACCGCGTGCAGAAACTATCCG
ACCGTGCACTTGATGGTTAACACAGAAACTCCACGTAGGATGCTGGCCGC
TGCAGATATCCCACCCCCTCACCCGAGCCGGCTGGGTTGGACACGCGTGC
CAAGGATACGAGCGCGCCGCGTGACGTGGAACATACAGACAGAAGAGGAA
TTTAGAACCCCGATCTTCGCATTGACGGACGTCGACTACCTGGAGTTCGG
CCGTGCCTTTGAAGGCAGCCTTGATGCTGTTGTGTGGCTGCGACGGTTGA
AAACGATCGAGTTTCAGTGGGAATCACCATTTAACGGGCCTATCCATCTG
GTGAAATGGCCAGCATGTCTGCAAAGGCTTGTCTTCGGAGGAGAGTTCAA
TCAGCAGATCGAACATGTCAAGTTCCCGGCATCCCTGCAGCATTTATCGT
TTGGATCCTACTTCAACCAACCCATCGAGGGCGTATTATGGCCGTCGTCG
CTGAAGGTGCTCATCTTGGGCTGCTTCGCGTTCAACAAACCTGTTGAGCG
TGTGGCATGGCCGACGTCCTTGCGGCAGCTTACGTTTGGAGGAGGGTTCA
ACCAGCCAATCGAACGGGCTACTTTTTCGGCGTCCCTGCAACGGCTCACA
TTCGGCGAACAGTTCGACCAGCCCATTGAGCGCGTCGAATGGCCAGATTC
GCTTCAGGTGCTCATTTTCGGAGAAAATTTCAACCAGCCTGTTGACAACG
TGAGGTGGCCGGCGTCATTGCAAGAGCTTACCTTTGGAGATTACCTGGAA
TTACCGAACGATCGGATGGGCATGAACTCATCGTTCAACCAGTATATCAG
CGATAGTGTTTGGCCTGCGTCATTGCGGCGGATCACCCTTGGCGGATTTT
TCAGACAGTCACTGCAAGGCCTGGGCACTTGGATGCCCAATCTGGAAGCG
TTACGTATCCTTGAATGGGATATTGACAATATACCAAACGAAAGCCTTCT
TGTCCGCGGAATCGAATGGCCTAACGGCCTTCGTGAGCTGACCGTCTTCA
AAGAATCGATCTTGGATGGGGTCGTGATTCCTTCAACCGTCCAGGTCTAC
CGTCCGTATTTGTATGTGTGATTTTGGAAAGAGGAGCTGCGTTTTCCCAA
GTTGCGTGCTGACATTATATTTTGATCGGAACGTACCGTAGTCTATATAG
GAAGGTATTTTAGGGAATGGAGTGGTGCCGGCGCCAGCGGAAGTGCTTCA
AACACGCGAACAAGTTGGTGGTGACACACGAGTGGCGCCTTCTCAGGTCC
ATCGATGACCCGAAGATGACACCGCATCCTGCTTCCTTGCGATACGGTAT
TCAACACCTACTGTAGTAAGACGTGCCTGTTGCGGGTTTGAGGAAAACTT
GAGGTTTGCGTTTGGCGGTGAACACTAGCTTTGTGATCATCTGCTGGTCA
GCTTTCCAAACTGTGCATGAGGTTGACAGCACAACCGAGAGGCAACGTTA
CTGGGGAACATTGTAGCCAGCATCTGCTGTTCGTTAGCAGTGCGGAATCG
TTGAATGTGCTCGAAAGGAGTCCCCAGGCCGTTGTAGCTTTTACCGGGTA
CCTCCTCGTCTCTCTCGCCAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig178:26962..34183-

>mRNA_Ecto-sp13_S_contig178.5402.1 ID=mRNA_Ecto-sp13_S_contig178.5402.1|Name=mRNA_Ecto-sp13_S_contig178.5402.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1491bp|location=Sequence derived from alignment at Ecto-sp13_S_contig178:26962..34183- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGGACGCGCCTTTTCGAGTTCCGCAAGGCCTGACCTGGCGGCCGA
GAACTGGGCGGGAGGGCTGCTCAGCCATGTTCTCCGAATGCAGAACGATG
AATGGGGTCCGGCCGTGGCGAGCGGCGACGCGACCAAGCTAGCCGAGCTG
GTGCTGCTTTGGTCCGGTTTGAAGCCCGAGCGGGCTCTGTCGATTCTGAG
AGACTGCGTCTCTGTGCTGGAAAAGGAGGTTGCGCTTTCGACTCTGGGTT
CTTCTTCCCGTCTTGCGACCCCGACTACGCCTGGACGCGCCAGTAGCTCG
TGCTTGAGCGCCCTCATCGTTGCTTTGAACGAGACGTGCGACGGGACGAG
TTGGTACACATCGACCAAGGAGCTGCAGCTGACGTCCTTGGAATTCTGCA
CCGCGTGCAGAAACTATCCGACCGTGCACTTGATGGTTAACACAGAAACT
CCACGTAGGATGCTGGCCGCTGCAGATATCCCACCCCCTCACCCGAGCCG
GCTGGGTTGGACACGCGTGCCAAGGATACGAGCGCGCCGCGTGACGTGGA
ACATACAGACAGAAGAGGAATTTAGAACCCCGATCTTCGCATTGACGGAC
GTCGACTACCTGGAGTTCGGCCGTGCCTTTGAAGGCAGCCTTGATGCTGT
TGTGTGGCTGCGACGGTTGAAAACGATCGAGTTTCAGTGGGAATCACCAT
TTAACGGGCCTATCCATCTGGTGAAATGGCCAGCATGTCTGCAAAGGCTT
GTCTTCGGAGGAGAGTTCAATCAGCAGATCGAACATGTCAAGTTCCCGGC
ATCCCTGCAGCATTTATCGTTTGGATCCTACTTCAACCAACCCATCGAGG
GCGTATTATGGCCGTCGTCGCTGAAGGTGCTCATCTTGGGCTGCTTCGCG
TTCAACAAACCTGTTGAGCGTGTGGCATGGCCGACGTCCTTGCGGCAGCT
TACGTTTGGAGGAGGGTTCAACCAGCCAATCGAACGGGCTACTTTTTCGG
CGTCCCTGCAACGGCTCACATTCGGCGAACAGTTCGACCAGCCCATTGAG
CGCGTCGAATGGCCAGATTCGCTTCAGGTGCTCATTTTCGGAGAAAATTT
CAACCAGCCTGTTGACAACGTGAGGTGGCCGGCGTCATTGCAAGAGCTTA
CCTTTGGAGATTACCTGGAATTACCGAACGATCGGATGGGCATGAACTCA
TCGTTCAACCAGTATATCAGCGATAGTGTTTGGCCTGCGTCATTGCGGCG
GATCACCCTTGGCGGATTTTTCAGACAGTCACTGCAAGGCCTGGGCACTT
GGATGCCCAATCTGGAAGCGTTACGTATCCTTGAATGGGATATTGACAAT
ATACCAAACGAAAGCCTTCTTGTCCGCGGAATCGAATGGCCTAACGGCCT
TCGTGAGCTGACCGTCTTCAAAGAATCGATCTTGGATGGGGTCGTGATTC
CTTCAACCGTCCAGGTCTACCGTCCGTATTTGTATGTGTGA
back to top