mRNA_Ecto-sp13_S_contig178.5400.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig178.5400.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 253 bits (645), Expect = 2.210e-77 Identity = 202/370 (54.59%), Postives = 237/370 (64.05%), Query Frame = 1
Query: 7 CLDALIVALNETCDAGSWYTSTKELRLVSLEFCIACRSCQIIHLTVNAQVPRRLLAAVDAPPPHPKRLCGTRVARLGARRVTWNMPTSAELRNPVFAIADVNCLEFGHAFTGSLKAVAWPRRLKTIKFRQFYTFDMPIGLVEWPASLKRLAFGRAFNQPLERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-------------------------CSGSDEDWMMMYSNXXXXXXXXXXXXXXXXXXXGGIFRQSLQGLGTWMPNLEAVRVLDWEYH------SRDLRGIQWPKGLRELTVFKVSSLDGVVTPSTVQV 1023
CL+ALIVALNETCD SWYTSTKEL+L SL+FCIACR+CQ +HL V+ Q+PRRLLA+ DAPPPHPKRLC TRV RL +RRVTWNMPT+A+LR P+FA+ D+ LEFG AF SL+AV WP L+T++F FD I LV+WP L+ + FG FNQP+ER XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXX C + M++++N G +FRQSLQGLGTWMPNLE + +L YH S LR I+WPKGLR LT+ + +S+DGV P VQV
Sbjct: 51 CLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCWTRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFLQNVTFGGDFNQPIERVKFPASLQQLIFRTSSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFGNRLNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWCDEFAGNGMVIFANFDQPIGSSVGPALLRRLVLGHMFRQSLQGLGTWMPNLEVLHLL--HYHGSGLGDSNFLREIEWPKGLRHLTLLEGTSIDGVDIPLAVQV 418
BLAST of mRNA_Ecto-sp13_S_contig178.5400.1 vs. uniprot
Match: A0A6H5JUA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE) HSP 1 Score: 226 bits (577), Expect = 3.850e-68 Identity = 197/359 (54.87%), Postives = 231/359 (64.35%), Query Frame = 1
Query: 1 NSCLDALIVALNETCDAGSWYTSTKELRLVSLEFCIACRSCQIIHLTVNAQVPRRLLAAVDAPPPHPKRLCGTRVARLGARRVTWNMPTSAELRNPVFAIADVNCLEFGHAFTGSLKAVAWPRRLKTI---------KFRQFYTFDMPIGLVEWPASLKRLAFGRAFNQPLERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCSGSDEDWM---MMYSNXXXXXXXXXXXXXXXXXXXGGIFRQSLQGLGTWMPNLEAVRVLDWEYHSRD-------LRGIQWPKGLRELTVFKVSSLDGVVTPSTVQ 1020
+SCL+A+IVALNET D SWYTSTKE +L SLEFCIACR+ Q + L V+++ PRRLLAA DAPPPHPKRLCGTRV RL ARRVTW++PT+A LRN ++++ D + LEF AF SL+AVAWPRRLKT+ KF FD PI V WP +L++L FG N XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX C G ++ + ++ S X G FRQSLQ LGTWMPNLE +L +H D LRGI+WPKGLR+L V ++SSL GVV PSTV+
Sbjct: 10 DSCLNAIIVALNETSDGKSWYTSTKERQLASLEFCIACRNHQTLDLKVDSRTPRRLLAAADAPPPHPKRLCGTRVPRLRARRVTWDIPTAAGLRNSIYSMMDADSLEFVRAFEDSLEAVAWPRRLKTVEVSGIAEVAKFHDKSLFDQPIAGVVWPDTLEQLTFGLFLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEV--------------------------CFGVRQEVLGDVVVTSKFNRXIGASAWPKAMHRLTLGQNFRQSLQELGTWMPNLETFHLL---HHIHDSGTEDSFLRGIEWPKGLRQLAVCRLSSLAGVVIPSTVE 339
BLAST of mRNA_Ecto-sp13_S_contig178.5400.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI) HSP 1 Score: 215 bits (548), Expect = 1.220e-65 Identity = 104/158 (65.82%), Postives = 120/158 (75.95%), Query Frame = 1
Query: 1 NSCLDALIVALNETCDAGSWYTSTKELRLVSLEFCIACRSCQIIHLTVNAQVPRRLLAAVDAPPPHPKRLCGTRVARLGARRVTWNMPTSAELRNPVFAIADVNCLEFGHAFTGSLKAVAWPRRLKTIKFRQFYTFDMPIGLVEWPASLKRLAFGRAF 474
N CL +LIVALNETCD SWYTSTKEL+ SLEFCIACR+ I+HL V+ Q+PR LLAA DAPPPHPKRLC TRV RL AR VTWNM +AEL NP+FAI DV+CLEFG F GSL+AV WPRRLK I+F F+ P+ L++WP SL+ L G F
Sbjct: 12 NPCLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCWTRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLKMIEFLYTSPFNQPLELIKWPESLQHLVLGGDF 169
BLAST of mRNA_Ecto-sp13_S_contig178.5400.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 214 bits (546), Expect = 3.920e-61 Identity = 103/162 (63.58%), Postives = 122/162 (75.31%), Query Frame = 1
Query: 1 NSCLDALIVALNETCDAGSWYTSTKELRLVSLEFCIACRSCQIIHLTVNAQVPRRLLAAVDAPPPHPKRLCGTRVARLGARRVTWNMPTSAELRNPVFAIADVNCLEFGHAFTGSLKAVAWPRRLKTIKFRQFYTFDMPIGLVEWPASLKRLAFGRAFNQPL 486
+SCL L VALNETCD SWYTSTKEL+L SLE C+ACR Q +HLTV+A PRRLLAA DAP PHPKRLCGTRV RL ARR TWN+PT++ +R +FA DV+ LEFG AF GSL A+ WPRRLKTI+FRQ + + V WPASL+++ G FNQP+
Sbjct: 134 SSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEFRQSSPLNRLLDGVSWPASLRKVCLGHDFNQPI 295
BLAST of mRNA_Ecto-sp13_S_contig178.5400.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 204 bits (519), Expect = 1.760e-56 Identity = 98/152 (64.47%), Postives = 120/152 (78.95%), Query Frame = 1
Query: 1 NSCLDALIVALNETCDAGSWYTSTKELRLVSLEFCIACRSCQIIHLTVNAQVPRRLLAAVDAPPPHPKRLCGTRVARLGARRVTWNMPTSAELRNPVFAIADVNCLEFGHAFTGSLKAVAWPRRLKTIKFRQFYTFDMPIGLVEWPASLKRL 456
N+CL+A+ VAL ET D SWYTSTKEL+L SLEFC+ACR+ Q +HL V+ ++PR LLAA D PP HPKRL RV RL AR VTWNMPT+AELR+P+FA+ D++ L+FG AF GSL+AV WPRRL++I F F F+ PI LV+WPASLKRL
Sbjct: 34 NTCLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGPPQHPKRLSRRRVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRRLESIAFHNFSPFNTPIDLVKWPASLKRL 185
BLAST of mRNA_Ecto-sp13_S_contig178.5400.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE) HSP 1 Score: 179 bits (454), Expect = 3.350e-49 Identity = 223/401 (55.61%), Postives = 246/401 (61.35%), Query Frame = 1
Query: 43 CDAGSWYTSTKELRLVSLEFCIACRSCQIIHLTVNAQVPRRLLAAVDAPPPHPKRLCGTRVARLGARRVTWNMPTSAELRNPVFAIADVNCLEFGHAFTGSLKAVAWPRRLKTIKFRQFYTFDMPIGLVEWPASLKRLAFGRA----------------------------------------------------------------FNQPLERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCSGSDE----DWMMMYSNXXXXXXXXXXXXXXXXXXXGGIFRQSLQGLGTWMPNLEAVRVLDWEYHSRD----LRGIQWPKGLRELTVFKVSSLDGVVTPSTVQVYR 1029
CD WYTSTKEL+ SLEFCIACR Q + L V+ Q PR LLAAVDAP PH KR C TRV RL ARRV WNMPT+ EL++P+FA+ DV L+FG AF GSL++VAWP+RLK I F F+ PI VE+P SL L A + XXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E D +M+S XXXXXXXXXXXXXXX G FRQSLQGLGTW+PNLE LD S D LRGI+WP GLR+L VF+ S LDGV+ PSTV+V R
Sbjct: 2 CDGKRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAPSPHSKRPCRTRVPRLRARRVIWNMPTATELKSPIFALKDVVRLDFGPAFEGSLESVAWPQRLKEIDFSWGSLFNQPIEGVEFPPSLLELRLSDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYRSRXXXXXXXXXXXXXXXXXXXGEAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHESQGFDHAIMFSEFXXXXXXXXXXXXXXXLTLGHKFRQSLQGLGTWIPNLEIFHFLDHSNGSGDEDSLLRGIEWPTGLRQLAVFRDSRLDGVIIPSTVEVSR 402
BLAST of mRNA_Ecto-sp13_S_contig178.5400.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI) HSP 1 Score: 178 bits (452), Expect = 5.230e-49 Identity = 123/353 (34.84%), Postives = 161/353 (45.61%), Query Frame = 1
Query: 1 NSCLDALIVALNETCDAGSWYTSTKELRLVSLEFCIACRSCQIIHLTVNAQVPRRLLAAVDAPPPHPKRLCGTRVARLGARRVTWNMPTSAELRNPVFAIADVNCLEFGHAFTGSLKAVAWPRRLKTIKFRQFYTFDMPIGLVEWPAS---LKRL-----AFGRAFNQPLERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCSGSDEDWMMMYSNXXXXXXXXXXXXXXXXXXXGGIFRQSLQGLGTWMPNLEAVRVLDWEY----HSRDLRGIQWPKGLRELTVFKVSSLDGVVTPSTVQV 1023
+SCL+AL++ALNETC+ SWYTSTKEL+L SLEFC+ACR+ Q +HL V+AQ+PRRLLA DAPPPHP+ LC TRV RL ARRVTW M +AEL P+FA+ DV+CL+FG SL+A+ K F W + +RL RA++ +R D D +++ G F+QSLQGLGTWMPNLE +R+ D+ + L GI WP GLR+L V++ + +DGV PSTV+V
Sbjct: 111 SSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCRTRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKFGET---SLEALRLWHGRDGWKRSSFSFLHYSTSRSVWSSGQHLCRRLNSVAVVIARAYDWICDRCRRKR-------------------------------------------------------------------------------DNDVLVLRPTHRQPWLAYVFASTPL----GDDFKQSLQGLGTWMPNLEVLRLFDFRDPDFGNDSLLLGIGWPTGLRQLAVYECTKMDGVTIPSTVEV 377
BLAST of mRNA_Ecto-sp13_S_contig178.5400.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE) HSP 1 Score: 172 bits (436), Expect = 1.440e-45 Identity = 90/146 (61.64%), Postives = 102/146 (69.86%), Query Frame = 1
Query: 19 LIVALNETCDAGSWYTSTKELRLVSLEFCIACRSCQIIHLTVNAQVPRRLLAAVDAPPPHPKRLCGTRVARLGARRVTWNMPTSAELRNPVFAIADVNCLEFGHAFTGSLKAVAWPRRLKTIKFRQFYTFDMPIGLVEWPASLKRL 456
LI+ALNE CD WYTSTKEL+L SLEFC+ACR QI+ L V+AQ PR LLAAVDAPPPH KR C TRV RL ARRV WNMPT+ ELR +FA+ DVNCL FG F GSL+AV WP LK I F F+ ASL++L
Sbjct: 21 LILALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAPPPHTKRPCRTRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWPPPLKQIIFFSS-EFNQXXXXXXXXASLQKL 165
BLAST of mRNA_Ecto-sp13_S_contig178.5400.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI) HSP 1 Score: 159 bits (403), Expect = 9.840e-43 Identity = 85/166 (51.20%), Postives = 107/166 (64.46%), Query Frame = 1
Query: 1 NSCLDALIVALNETCDAGSWYTSTKELRLVSLEFCIACRSCQIIHLTVNAQVPRRLLAAVDAPPPHPKRLCGTRVARLGARRVTWNMPTSAELRNP--VFAIADVNCLEFGHAFTGSLKAVAWPRRLKTIKFRQFYTFDMPIGLVEWPASLKRLAFGRAFNQPLER 492
+SCL+A++VAL+ETCD SWYTSTKEL+L SL FC ACR+ Q +HL V+ +PRRLLAA DAPPP + A + S+ + P VFA+ DV+ LEFG F G+L+AVAWPR LKTI + F PI L+EWP SL+ L FG F QP+ R
Sbjct: 134 SSCLNAIVVALSETCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVDEHIPRRLLAAADAPPPASEAAVSDTRAPTHSASCDVEHADSSGIEEPCTVFAMTDVDHLEFGWDFEGNLEAVAWPRWLKTIDLHPWSNFGKPIDLIEWPDSLQTLEFGWEFYQPIYR 299
BLAST of mRNA_Ecto-sp13_S_contig178.5400.1 vs. uniprot
Match: A0A6H5K0U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U4_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 6.410e-19 Identity = 52/125 (41.60%), Postives = 70/125 (56.00%), Query Frame = 1
Query: 10 LDALIVALNETCDAGS---WYTSTKELRLVSLEFCIACRSCQIIHLTVNAQVPRRLLAAVDAPPPHPKRLCGTRVARLGARRVTWNMPTSAELRNPVFAIADVNCLEFGHAFTGSLKAVAWPRRL 375
LD +IV LN+ C G W+ STKEL+L SL+ C ACR +HL VN P RLLA D+P + GTRV RL AR V+W++ ++ L + ++A+A F + L AV WP L
Sbjct: 30 LDVVIVVLNQACGDGGQKHWFASTKELQLASLQLCEACRDAAALHLRVNTSTPLRLLAPADSPSDGSEE--GTRVPRLRAREVSWDLTSADRLSSSIYALASAQVFTFSDSLNAVLDAVVWPTSL 152 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig178.5400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig178.5400.1 >prot_Ecto-sp13_S_contig178.5400.1 ID=prot_Ecto-sp13_S_contig178.5400.1|Name=mRNA_Ecto-sp13_S_contig178.5400.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=349bp NSCLDALIVALNETCDAGSWYTSTKELRLVSLEFCIACRSCQIIHLTVNAback to top mRNA from alignment at Ecto-sp13_S_contig178:695..1741+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig178.5400.1 ID=mRNA_Ecto-sp13_S_contig178.5400.1|Name=mRNA_Ecto-sp13_S_contig178.5400.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1047bp|location=Sequence derived from alignment at Ecto-sp13_S_contig178:695..1741+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig178:695..1741+ >mRNA_Ecto-sp13_S_contig178.5400.1 ID=mRNA_Ecto-sp13_S_contig178.5400.1|Name=mRNA_Ecto-sp13_S_contig178.5400.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1047bp|location=Sequence derived from alignment at Ecto-sp13_S_contig178:695..1741+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |