mRNA_Ecto-sp13_S_contig17791.5397.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17791.5397.1
Unique NamemRNA_Ecto-sp13_S_contig17791.5397.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17791.5397.1 vs. uniprot
Match: D8LJA1_ECTSI (Phenylalanine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJA1_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 7.880e-77
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 1
Query:    1 REEISRAGYTEMLTHGLCSRAENFKMLRRQEEPCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDTGARNSRRLVATYMGPTAGFEIIHGLVDRIMSLVQV 372
            REEISRAGYTEMLTHGLCSRAENFKMLRRQEEPCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDTGARN RRLVATYMGPTAGFEIIHGLVDRIMSLVQV
Sbjct:  421 REEISRAGYTEMLTHGLCSRAENFKMLRRQEEPCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDTGARNCRRLVATYMGPTAGFEIIHGLVDRIMSLVQV 544          
BLAST of mRNA_Ecto-sp13_S_contig17791.5397.1 vs. uniprot
Match: A0A662X754_9STRA (Phenylalanine--tRNA ligase (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X754_9STRA)

HSP 1 Score: 165 bits (417), Expect = 9.010e-49
Identity = 80/126 (63.49%), Postives = 99/126 (78.57%), Query Frame = 1
Query:    1 REEISRAGYTEMLTHGLCSRAENFKMLRRQEE--PCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDTGARNSRRLVATYMGPTAGFEIIHGLVDRIMSLVQV 372
            R+EISRAGY E+LTHGLCS AENF+ L R ++    V LSNP  +E+EVVRTS+LPG LKT Q N+AM +K+G++LFE+SDVVV DD  D GA+N RR+ A Y GPT GFE+IHGLVDRIM L+ +
Sbjct:   49 RDEISRAGYIELLTHGLCSHAENFEFLNRVDDGKSAVVLSNPATIEFEVVRTSMLPGVLKTIQNNKAMSIKEGLKLFEVSDVVVIDDKTDVGAKNVRRICAAYTGPTDGFEVIHGLVDRIMQLMGI 174          
BLAST of mRNA_Ecto-sp13_S_contig17791.5397.1 vs. uniprot
Match: A0A7S2UT03_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT03_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.170e-48
Identity = 85/124 (68.55%), Postives = 98/124 (79.03%), Query Frame = 1
Query:    1 REEISRAGYTEMLTHGLCSRAENFKMLRRQEEPCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDTGARNSRRLVATYMGPTAGFEIIHGLVDRIMSLVQV 372
            REEISRAGYTEMLTHGLCS+ ENF  L + E P V L NP ++EYEVVRT+LLPGALKT Q NR+MP KDG++LFEISD+V  D     GA N R LVA Y+G TAGFE+IHGLVDR+M+L QV
Sbjct:  292 REEISRAGYTEMLTHGLCSKQENFGHLLQPETPAVELLNPANLEYEVVRTTLLPGALKTVQHNRSMPTKDGIKLFEISDIVQVDPDHAIGACNKRHLVAVYVGLTAGFEVIHGLVDRVMALCQV 415          
BLAST of mRNA_Ecto-sp13_S_contig17791.5397.1 vs. uniprot
Match: W7TXC3_9STRA (Phenylalanine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXC3_9STRA)

HSP 1 Score: 169 bits (429), Expect = 2.900e-47
Identity = 85/124 (68.55%), Postives = 97/124 (78.23%), Query Frame = 1
Query:    1 REEISRAGYTEMLTHGLCSRAENFKMLRRQEEPCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDTGARNSRRLVATYMGPTAGFEIIHGLVDRIMSLVQV 372
            R+EI+RAGY E+LTHGLCSRAENF  LRR E   VSLSNP + EYE+VRT+LLPG LK  Q NRA  VKDG+R FEISDVV+RDD  D GA+N RRLVA+     AGFE IHGLVDR+M LVQ+
Sbjct:  413 RDEIARAGYLEVLTHGLCSRAENFAKLRRPETKAVSLSNPANEEYEIVRTTLLPGLLKVLQHNRAAQVKDGLRFFEISDVVLRDDHTDVGAKNIRRLVASSTSMVAGFESIHGLVDRVMLLVQI 536          
BLAST of mRNA_Ecto-sp13_S_contig17791.5397.1 vs. uniprot
Match: A0A7S3P646_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P646_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.780e-45
Identity = 82/129 (63.57%), Postives = 96/129 (74.42%), Query Frame = 1
Query:    1 REEISRAGYTEMLTHGLCSRAENFKMLRRQEEPCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDS-----CDTGARNSRRLVATYMGPTAGFEIIHGLVDRIMSLVQV 372
            REEI RAGY E+LTHGLCS  +NF  LRRQ  P VSLSNP +VEY+VVRT+LLPG LKT Q N+A     G +LFEISDVV+ DD         GA+N+RR+ A Y GPT+GFEIIHGLVDRIM+L +V
Sbjct:  134 REEIGRAGYIEVLTHGLCSIHDNFTALRRQVSPAVSLSNPANVEYQVVRTTLLPGLLKTLQHNKAASFGSGFKLFEISDVVLPDDKHVITETIVGAKNARRICAVYAGPTSGFEIIHGLVDRIMTLTEV 262          
BLAST of mRNA_Ecto-sp13_S_contig17791.5397.1 vs. uniprot
Match: H3G852_PHYRM (Phenylalanine--tRNA ligase n=20 Tax=Peronosporaceae TaxID=4777 RepID=H3G852_PHYRM)

HSP 1 Score: 164 bits (414), Expect = 3.490e-45
Identity = 79/126 (62.70%), Postives = 100/126 (79.37%), Query Frame = 1
Query:    1 REEISRAGYTEMLTHGLCSRAENFKMLRRQEE--PCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDTGARNSRRLVATYMGPTAGFEIIHGLVDRIMSLVQV 372
            R+EISR+GY E+LTHGLCS  ENF+ L R+++    V LSNP  VE+EVVRTS+LPG LKT Q N+AM +K+G++LFE+SDVVV DD+ D GA+N RR+ A Y GPT GFE+IHGLVDRIM L+ +
Sbjct:  411 RDEISRSGYIELLTHGLCSHKENFEYLNREDDGKTAVVLSNPATVEFEVVRTSMLPGVLKTIQNNKAMSIKEGLKLFEVSDVVVIDDNTDVGAKNVRRICAAYTGPTDGFEVIHGLVDRIMQLMGI 536          
BLAST of mRNA_Ecto-sp13_S_contig17791.5397.1 vs. uniprot
Match: A0A8J5MA69_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MA69_9STRA)

HSP 1 Score: 165 bits (418), Expect = 4.810e-45
Identity = 81/126 (64.29%), Postives = 100/126 (79.37%), Query Frame = 1
Query:    1 REEISRAGYTEMLTHGLCSRAENFKMLRRQEE--PCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDTGARNSRRLVATYMGPTAGFEIIHGLVDRIMSLVQV 372
            R+EISRAGY E+LTHGLCS  ENF+ L R+++    V LSNP  VE+EVVRTS+LPG LKT Q N+AM +K+G++LFEISDVVV DD+ D GA+N RR+ A Y GPT GFE+IHGLVDRIM L+ +
Sbjct:  414 RDEISRAGYIELLTHGLCSHKENFEYLNREDDGHSAVVLSNPATVEFEVVRTSMLPGVLKTIQNNKAMSIKEGLKLFEISDVVVIDDNTDVGAKNVRRICAAYTGPTDGFEVIHGLVDRIMQLMGI 539          
BLAST of mRNA_Ecto-sp13_S_contig17791.5397.1 vs. uniprot
Match: A0A0P1A997_PLAHL (Phenylalanine--tRNA ligase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A997_PLAHL)

HSP 1 Score: 164 bits (415), Expect = 1.100e-44
Identity = 81/126 (64.29%), Postives = 99/126 (78.57%), Query Frame = 1
Query:    1 REEISRAGYTEMLTHGLCSRAENFKMLRRQEE--PCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDTGARNSRRLVATYMGPTAGFEIIHGLVDRIMSLVQV 372
            R+EISRAGY E+LTHGLCS  ENF+ L R ++    V LSNP  VE+EVVRTS+LPG LKT Q N+AM +K+G++LFE+SDVVV DD  +TGA+N RR+ A Y GPT GFEIIHGLVDRIM L+ +
Sbjct:  414 RDEISRAGYIELLTHGLCSHKENFEYLNRADDGHTAVVLSNPATVEFEVVRTSMLPGVLKTIQNNKAMSIKEGLKLFEVSDVVVIDDDTETGAKNIRRICAAYTGPTDGFEIIHGLVDRIMQLMGI 539          
BLAST of mRNA_Ecto-sp13_S_contig17791.5397.1 vs. uniprot
Match: A0A484E4I1_BRELC (Phenylalanine--tRNA ligase n=2 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E4I1_BRELC)

HSP 1 Score: 162 bits (409), Expect = 1.870e-44
Identity = 79/126 (62.70%), Postives = 100/126 (79.37%), Query Frame = 1
Query:    1 REEISRAGYTEMLTHGLCSRAENFKMLRRQEE--PCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDTGARNSRRLVATYMGPTAGFEIIHGLVDRIMSLVQV 372
            R+EISRAG+ E+LTHGLCS  ENF+ L R+++    V LSNP  +E+EVVRTS+LPG LKT Q N+AM +K+G++LFE+SDVVV D+S D GA+N RR+ A Y GPT GFEIIHGLVDRIM L+ +
Sbjct:  414 RDEISRAGFIELLTHGLCSHKENFEYLNRKDDGHSAVVLSNPATIEFEVVRTSMLPGVLKTIQNNKAMSIKEGLKLFEVSDVVVIDNSSDIGAKNVRRICAAYTGPTDGFEIIHGLVDRIMQLLGI 539          
BLAST of mRNA_Ecto-sp13_S_contig17791.5397.1 vs. uniprot
Match: A0A7R9YVF7_9STRA (Phenylalanine--tRNA ligase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YVF7_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.890e-44
Identity = 77/129 (59.69%), Postives = 97/129 (75.19%), Query Frame = 1
Query:    1 REEISRAGYTEMLTHGLCSRAENFKMLRRQEEPCVSLSNPKHVEYEVVRTSLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDS-----CDTGARNSRRLVATYMGPTAGFEIIHGLVDRIMSLVQV 372
            R+EI RAGYTE+LTHGLCS+ +NF  LRR E   VSLSNP +VEY+VVRT+LLPG LKT Q N++    +G ++FEISDVV+ D +        GA+N RRL A Y GPT+GFE++HGLVDRIM+L +V
Sbjct:  150 RDEIGRAGYTEVLTHGLCSKHDNFTALRRAETDAVSLSNPANVEYQVVRTTLLPGLLKTLQHNKSASFANGFKIFEISDVVLPDSAHVITETIVGAKNVRRLAAVYAGPTSGFEVVHGLVDRIMTLTEV 278          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17791.5397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJA1_ECTSI7.880e-7799.19Phenylalanine--tRNA ligase n=2 Tax=Ectocarpus TaxI... [more]
A0A662X754_9STRA9.010e-4963.49Phenylalanine--tRNA ligase (Fragment) n=1 Tax=Noth... [more]
A0A7S2UT03_9STRA1.170e-4868.55Phenylalanine--tRNA ligase n=1 Tax=Fibrocapsa japo... [more]
W7TXC3_9STRA2.900e-4768.55Phenylalanine--tRNA ligase n=2 Tax=Monodopsidaceae... [more]
A0A7S3P646_9STRA1.780e-4563.57Phenylalanine--tRNA ligase n=1 Tax=Amphora coffeif... [more]
H3G852_PHYRM3.490e-4562.70Phenylalanine--tRNA ligase n=20 Tax=Peronosporacea... [more]
A0A8J5MA69_9STRA4.810e-4564.29Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A0P1A997_PLAHL1.100e-4464.29Phenylalanine--tRNA ligase n=1 Tax=Plasmopara hals... [more]
A0A484E4I1_BRELC1.870e-4462.70Phenylalanine--tRNA ligase n=2 Tax=Bremia lactucae... [more]
A0A7R9YVF7_9STRA1.890e-4459.69Phenylalanine--tRNA ligase (Fragment) n=1 Tax=Pseu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17791contigEcto-sp13_S_contig17791:644..1812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score247.7
Seed ortholog evalue2.9e-63
Seed eggNOG ortholog2880.D8LJA1
Model size372
KEGG rclassRC00055,RC00523
KEGG koko:K01890
KEGG ReactionR03660
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.phenylalanine-tRNA ligase activity
EggNOG OGsCOG0072@1,KOG2472@2759
EC6.1.1.20
Cds size372
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462922.0640252-CDS-Ecto-sp13_S_contig17791:643..7181681462922.0640252-CDS-Ecto-sp13_S_contig17791:643..718Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17791 644..718 +
1681462922.0770948-CDS-Ecto-sp13_S_contig17791:1082..12081681462922.0770948-CDS-Ecto-sp13_S_contig17791:1082..1208Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17791 1083..1208 +
1681462922.0869627-CDS-Ecto-sp13_S_contig17791:1641..18121681462922.0869627-CDS-Ecto-sp13_S_contig17791:1641..1812Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17791 1642..1812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17791.5397.1prot_Ecto-sp13_S_contig17791.5397.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17791 644..1812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17791.5397.1

>prot_Ecto-sp13_S_contig17791.5397.1 ID=prot_Ecto-sp13_S_contig17791.5397.1|Name=mRNA_Ecto-sp13_S_contig17791.5397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
REEISRAGYTEMLTHGLCSRAENFKMLRRQEEPCVSLSNPKHVEYEVVRT
SLLPGALKTAQFNRAMPVKDGVRLFEISDVVVRDDSCDTGARNSRRLVAT
YMGPTAGFEIIHGLVDRIMSLVQV
back to top

mRNA from alignment at Ecto-sp13_S_contig17791:644..1812+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17791.5397.1 ID=mRNA_Ecto-sp13_S_contig17791.5397.1|Name=mRNA_Ecto-sp13_S_contig17791.5397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1169bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17791:644..1812+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGAGGAAATCTCCAGGGCCGGGTACACGGAGATGCTGACGCATGGCCT TTGCTCAAGGGCGGAGAACTTCAAGGTGAGGCCATTTGTGTTCGACAGAC CTCTTGAAAGGACCACAGATAGGGCGGGGAACTTCAACGTGATGCCATTT TGTGTTCGACATGACCTCTTGAAAGGACCACGAACAGGGCGGATCTCTTG AAAGGACCACGAATAGGGCGGATGCGACGGCATCTGTATTCGAAATTTGG GTGTGTTGAGCGTGTAGCAATCGTGAGCGGGTGTCGTTTTTCATCGATGT TTTTATCTGGGCTACATGATGCTCGATGGTCCCGCGTGCGTTACACGTTC AACGCTGTCTGAGCTTCCAATTAAACGCTGGTTGCTGAGTGCCCCTCCCC CCCCCCCACCCCCCACCCCCCCCCGTTTTCGTTCGGCAGATGCTTCGGCG CCAAGAGGAGCCGTGCGTGTCCCTGTCCAACCCCAAGCACGTGGAGTACG AGGTTGTTAGGACCAGCCTGCTCCCGGGAGCTTTGAAGACGGCGCAGTTC AACCGCGCGATGCCGGTGCGTTGTTTGCTGTGCCTGCTGCTGCTGCTGCT GCTGCTGCTGCTGCTGCTGCTGCTGCTGATGCTGCTGCTGCTGTGTTAGC GTCGTCAGTGGTGCTGTTGTGTCGCTTGCTGCGCGGTGGCGGTACTGGTC GTCCATATCGCGGTTATTTCGACGTTGGCGCTACCGGCCCTTCTATGTTT GGCCGTTGGTGGCGGCGGAATTGGTTTAGGCGCCATCGTGGTGTCCCTAA CGATACCCCACTCTTCCTTGTAGGGATTGCATCACTCCCTCCCCCCTCTC TCGATGTGATGGCATTCCGTTTTTGAACACCGCATCCAGTGTTTGAACCC TTGTGCCCTCTTGATCTACGCAATACATTCCAGGCGTGCCTGTCTTTGAC GTCACTCCTCTGTTTCACCTACCCCGGTGCTTGCTCCTAACCCCGAAGGT GAAGGACGGCGTGCGCCTCTTCGAGATCTCGGACGTGGTCGTACGCGACG ATTCCTGCGATACCGGGGCCAGAAACTCCCGCCGTCTGGTGGCCACCTAC ATGGGGCCCACCGCGGGGTTCGAGATCATCCACGGTCTCGTCGACAGAAT TATGTCGCTCGTTCAGGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17791:644..1812+

>mRNA_Ecto-sp13_S_contig17791.5397.1 ID=mRNA_Ecto-sp13_S_contig17791.5397.1|Name=mRNA_Ecto-sp13_S_contig17791.5397.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17791:644..1812+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGAGGAAATCTCCAGGGCCGGGTACACGGAGATGCTGACGCATGGCCT
TTGCTCAAGGGCGGAGAACTTCAAGATGCTTCGGCGCCAAGAGGAGCCGT
GCGTGTCCCTGTCCAACCCCAAGCACGTGGAGTACGAGGTTGTTAGGACC
AGCCTGCTCCCGGGAGCTTTGAAGACGGCGCAGTTCAACCGCGCGATGCC
GGTGAAGGACGGCGTGCGCCTCTTCGAGATCTCGGACGTGGTCGTACGCG
ACGATTCCTGCGATACCGGGGCCAGAAACTCCCGCCGTCTGGTGGCCACC
TACATGGGGCCCACCGCGGGGTTCGAGATCATCCACGGTCTCGTCGACAG
AATTATGTCGCTCGTTCAGGTG
back to top