mRNA_Ecto-sp13_S_contig1779.5396.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1779.5396.1
Unique NamemRNA_Ecto-sp13_S_contig1779.5396.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1779.5396.1 vs. uniprot
Match: A0A6H5KHW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHW8_9PHAE)

HSP 1 Score: 343 bits (881), Expect = 2.910e-111
Identity = 269/342 (78.65%), Postives = 272/342 (79.53%), Query Frame = 1 
Query:   85 DGAASEPESTAQTERHSLPTVAVSGSEDPTAASPDLGTGAXXXXXXXXXXXXXXXXXXXXXXXXKTPAGDGGGSCEIGAVGXXXXXXXXXXXXXXXXXXXXGDXXXXDXXXXXDGXXXXXXXXXXXXXXXXXXXXXXXXXXX-SDETDDGXXHXGDNAVAAGDEEKATDGGAVDPDPSSKDQPGEHLSTKYTKEELMARHWGMNLMQMKRVKALLRMGVCEEDLEIADRLLKMGLNWSNDTPPTKEEQLLGYTSQQRQRMKALHILGLTEESFDRCRAVMLSSLGPSAFGYSADETAASAVSAEAEEGWTPGDKFRRRXXXXXXXXXXXXTGMLRMPTFSQS 1107
            DGAA EPE+TAQTERH LPTVAVS SE PTAASPDLGTG XXXXXXXXXXXXXXXXXXXXXXXX           E  AVG                    GD    D  XXX  XX       XXXXXXXXXXXXXXXXX  SDETDD    X        DEEKATDG AVDPDPSSKDQP EHLSTKYTKEELMARHWGMNLMQMKRVKALLRMGVCEEDLEIADRLLKMGLNWSNDTPPTKEEQLLGYTSQQRQR+KALHILGLTEESFDRCRAVMLSSLGPSAFGYSADETAASAVSAEAEEGWTPGDKFRRRXXXXXXXXXXXXTG+LRMPTFS S
Sbjct:   26 DGAADEPETTAQTERHYLPTVAVSESEYPTAASPDLGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEREAVGGAVLSCSDCGRDGVSGSDCGGDSGGCDGGXXXXXXXSGESAGCXXXXXXXXXXXXXXXXXAGSDETDDDGGXXXXXXXXXXDEEKATDGEAVDPDPSSKDQPEEHLSTKYTKEELMARHWGMNLMQMKRVKALLRMGVCEEDLEIADRLLKMGLNWSNDTPPTKEEQLLGYTSQQRQRVKALHILGLTEESFDRCRAVMLSSLGPSAFGYSADETAASAVSAEAEEGWTPGDKFRRRXXXXXXXXXXXXTGILRMPTFSHS 367
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BLAST of mRNA_Ecto-sp13_S_contig1779.5396.1 vs. uniprot
Match: D8LT43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT43_ECTSI)

HSP 1 Score: 255 bits (651), Expect = 6.140e-80
Identity = 144/146 (98.63%), Postives = 145/146 (99.32%), Query Frame = 1 
Query:  670 MARHWGMNLMQMKRVKALLRMGVCEEDLEIADRLLKMGLNWSNDTPPTKEEQLLGYTSQQRQRMKALHILGLTEESFDRCRAVMLSSLGPSAFGYSADETAASAVSAEAEEGWTPGDKFRRRXXXXXXXXXXXXTGMLRMPTFSQS 1107
            MARHWGMNLMQMKRVKALLRMGVCEEDLEIADRLLKMGLNWSNDTPPTKEEQLLGY SQQRQRMKALHILGLTEESFDRCRAVMLSSLGPSAFGYSADETAASAVSAEAEEGWTPGDKFRRRXXXXXXXXXXXXTG+LRMPTFSQS
Sbjct:    1 MARHWGMNLMQMKRVKALLRMGVCEEDLEIADRLLKMGLNWSNDTPPTKEEQLLGYNSQQRQRMKALHILGLTEESFDRCRAVMLSSLGPSAFGYSADETAASAVSAEAEEGWTPGDKFRRRXXXXXXXXXXXXTGILRMPTFSQS 146
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BLAST of mRNA_Ecto-sp13_S_contig1779.5396.1 vs. uniprot
Match: D7FYM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM0_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 8.660e-12
Identity = 51/132 (38.64%), Postives = 75/132 (56.82%), Query Frame = 1 
Query:  592 GAVDPD----PSSKDQPGEHLSTKYTKEELMARHWGMNLMQMKRVKALLRMGVCEEDLEIADRLLKMGLNWSNDTPPTKEEQLLGYTSQQRQRMKALHILGLTEESFDRCRAVMLSSLGPSAFGYSADETAA 975
            GA +P+    P S      H+ST Y K+++M +H+G+   Q  R +ALLR+GV +ED+ IA+RL+      +++TP +KEE LLG T  Q    KAL +LG++E   +  R+  L  LG    G  A E  A
Sbjct:   49 GAEEPEQNGRPFSPQMKSPHISTLYEKQDVMVKHFGVTQKQALRTQALLRLGVTDEDVRIAERLMGSRSEGADNTP-SKEEWLLGVTYAQMSFHKALQVLGISEAVVEEERSRRLGELGSGGRGGGASECGA 179
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1779.5396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KHW8_9PHAE2.910e-11178.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT43_ECTSI6.140e-8098.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FYM0_ECTSI8.660e-1238.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1779contigEcto-sp13_S_contig1779:11856..15271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1547
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_004080.1
Cds size1422
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462921.995739-CDS-Ecto-sp13_S_contig1779:11855..126401681462921.995739-CDS-Ecto-sp13_S_contig1779:11855..12640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1779 11856..12640 +
1681462922.0092087-CDS-Ecto-sp13_S_contig1779:13250..135741681462922.0092087-CDS-Ecto-sp13_S_contig1779:13250..13574Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1779 13251..13574 +
1681462922.022468-CDS-Ecto-sp13_S_contig1779:14833..151461681462922.022468-CDS-Ecto-sp13_S_contig1779:14833..15146Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1779 14834..15146 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462922.0319412-UTR-Ecto-sp13_S_contig1779:15146..152711681462922.0319412-UTR-Ecto-sp13_S_contig1779:15146..15271Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1779 15147..15271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1779.5396.1prot_Ecto-sp13_S_contig1779.5396.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1779 11856..15146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1779.5396.1

>prot_Ecto-sp13_S_contig1779.5396.1 ID=prot_Ecto-sp13_S_contig1779.5396.1|Name=mRNA_Ecto-sp13_S_contig1779.5396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=474bp
MEQVIGGGGGGAENSTSVADAAAAAAATDGAASEPESTAQTERHSLPTVA
VSGSEDPTAASPDLGTGAGDPTPAAVAAAEGEAAAAAAKADAKTPAGDGG
GSCEIGAVGGGVLSVSDCGRGGVSGSDCGGDGGSGDGGDGDDGGGGGGGG
SGDGAGCGKGGGSEDGAGAGSDETDDGGGHGGDNAVAAGDEEKATDGGAV
DPDPSSKDQPGEHLSTKYTKEELMARHWGMNLMQMKRVKALLRMGVCEED
LEIADRLLKMGLNWSNDTPPTKEEQLLGYTSQQRQRMKALHILGLTEESF
DRCRAVMLSSLGPSAFGYSADETAASAVSAEAEEGWTPGDKFRRRAAPSG
GGGGHHHTGMLRMPTFSQSSHNHISSGNIGRQGDPQRVFSRGIVGSVGSN
ARGNRGGLGGLGMAGGNKARRASDSVTGGYHLPDINAGKKKPRGVGGGAV
AAGLPPLGSVVGSPVVSTRTDPG*
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mRNA from alignment at Ecto-sp13_S_contig1779:11856..15271+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1779.5396.1 ID=mRNA_Ecto-sp13_S_contig1779.5396.1|Name=mRNA_Ecto-sp13_S_contig1779.5396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3416bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1779:11856..15271+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAACAGGTCATCGGTGGCGGCGGCGGCGGCGCCGAGAATAGCACTAG
CGTCGCCGACGCTGCCGCCGCGGCCGCGGCCACCGACGGTGCTGCGAGCG
AGCCTGAGAGTACAGCTCAGACCGAGCGACATTCCTTGCCGACTGTAGCG
GTCAGCGGAAGCGAAGATCCTACCGCCGCCTCCCCAGATCTGGGAACAGG
GGCTGGGGACCCGACACCGGCAGCAGTAGCAGCAGCTGAGGGGGAGGCGG
CAGCAGCGGCGGCTAAGGCGGATGCAAAGACCCCGGCCGGAGATGGCGGC
GGTAGTTGCGAAATAGGAGCGGTCGGGGGGGGCGTGCTCTCTGTCTCTGA
TTGTGGTCGTGGTGGAGTTAGTGGCAGCGATTGTGGTGGTGACGGTGGTA
GTGGTGACGGTGGTGATGGTGATGATGGTGGTGGTGGTGGTGGTGGTGGC
TCTGGAGATGGTGCTGGCTGTGGAAAAGGTGGTGGCTCCGAAGATGGTGC
TGGCGCTGGCTCTGATGAAACTGACGATGGCGGCGGACACGGTGGGGACA
ATGCCGTTGCCGCCGGGGACGAGGAGAAGGCCACGGACGGCGGGGCGGTC
GACCCCGACCCTAGCTCAAAGGACCAGCCCGGGGAGCACCTGTCGACCAA
ATACACGAAGGAAGAGCTGATGGCGAGACACTGGGGCATGAACTTGATGC
AGATGAAGCGAGTCAAGGCGCTCCTGAGGATGGGTGTCTGCGAGGAGGAC
CTCGAAATAGCGGACAGGCTGCTAAAGATGGGCCTGTACGTCTTTACTTC
ATCTATCATTTAGCTGCTGTGCGAGCCGCCAGGGGTGGAGTTGGATTGGT
CTCTTGTTGGAGCGATATTTGGCATTCAGTACCATGGACCCCCCTCTTGG
TCTGGTTGTCTGTGTTTTCTTTCTCTGATTTCTCGGTAATGCCTTATCTG
CCTGTCTGTCTGTCTGTCTGTCTGTCTATCTATCTGTCTGTCCCTCTCTC
CCTCCCTCTCCTCGTCCCTATCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCACCCCCCCCCCCCCCCCCCCCCTCTCTCCGTCTCATTTTGTCTA
CTCCCTTTTGCGGTGGTTTTCGTTTCGGTTGGTAACGTTCCAGCCCCGTA
TCGGTACACCAAGTGCGGATGCTTCGAATGCCAAAGTGTCCGAATTCGAC
GCTCTCCCCCACCCCTTAGAACAATCCCCGCCATGACGTTCCCCATTCCT
CGCCCCCCCCGCGGATGGAGGTCTATGAACGAACTACAACGAACGGCTAT
ACGTTTTCGTCTCCTTCCCCTCCTCCCTCCCTACCGCGTATCATCGTCCT
CACTCTCCGTCACTCCCTCTCGTCGCTTTCTCGCGAACGACGCAGGAACT
GGTCGAACGACACCCCGCCCACGAAGGAGGAGCAGCTCTTGGGCTACACC
TCGCAGCAGAGGCAGCGGATGAAGGCTCTACACATCTTGGGCCTTACGGA
GGAGTCCTTCGACCGCTGCCGGGCGGTCATGCTGAGCTCCCTCGGGCCCT
CGGCGTTTGGGTACTCCGCGGACGAGACGGCGGCGTCAGCGGTGAGCGCG
GAGGCGGAGGAGGGCTGGACGCCCGGGGACAAGTTCCGGAGAAGAGCGGC
CCCGAGCGGCGGCGGTGGCGGCCACCACCACACCGGGATGCTAAGGATGC
CGACGTTTAGCCAAAGCAGGTGAAGTACCATGAATTTCTGGTGGGAAGAT
ATGGAAAGGGTCGGTTAGGATGCCGAAGTTTAGCCCCAGCAGGTAATTTT
ACCATACCATGAATTTTTGGTGGGGAAGGAGGAGGGTTGAGTCGGCACAC
GGAGCCTAAGTATTTTGGCGACAAGCCACGGCCAACCTCGAATTTCCAGA
AAAAATTTGAGGGGCGTACACTTGGCACTCATCCCCGAGGCCTCGAAGGG
GAGAGCTTGTTGGCTACGGCCTGCTGTACTGTCTAGAAGCTACGGTCGTC
TTTCAGGTTGAGCGCGTTCGATTCGTCATCGCCTCTGTCGGCAGGGAGAA
AACAGGTGCTGCCCGATTTTCAGGAGAAACGCACGAAGAAAAAACGAGGT
GTAGCCCTATTCCTATAAATACAGTTCGAAGTAGTCTATCCCATTAGGCC
CTCCCATAAAGTGCACGCACGCAGAAATTTCGTATCCATCCGCAAAGCTC
ACCATGTGTTGCTTCGAATCACCCTTTGGGCATTCTGCGAATACCTCTGC
TGTAGTCCACCACACAACATTTTCGTCAGATATGGCGATATCTATTTTCG
TCGTTTTCAGGTCGGACTCAACGGAGGGATACGAAACACGTGGAACGAAC
CTTGCACTATCCATTAAGCATCGACCAGTGTTTGTCCCTAGCGGCTGGAC
CAACTGTGCTTGTAGCGTCGATGGTACCTAGGGGCTGCGGCCAGAAGCAC
GATAGCATCACAACAGAGCGTACAGCTTTTTACGCCACCAGACTGACCGG
ACTCTTGAAGGGTGAGACACTCCTGCCTTTGCCCCAGCAAGCATCCGACT
ATTTTATACTGTGGCGGCGGTCTTGGTGGTTGCGAGGGGGGCTGTGGTTG
TCGAAGTACCTTAGATGTATCAAGTAACGAAGACGAAATCGAAGAACGCC
CCCGCCGTGAGCAGGGCGGTAATATCGTCACAAAGTACTTTTTTCTTTCA
AACGCACCCACATATCCACCAATCATCGCGCCACTCGAAGTTACCACAGC
GTAGGCAAAGGCTGACTGACCCCCGTCCCGTTCCCTGTCTGGACCCGTCA
CGCCTCTCTCGCGACGTACACACAAATCGTGACCCGATCGCGCGACACCC
GCAACAACAACAACGCGGCCGGCCGCACTTGCGTTGCTCACGCTTACTTC
CACCACACGGCGCGGTGGACTGATTCGTTCTTGGGCGGCACAAACGGCTC
GCGAAAACAACAAAAACGGAACAAACAGTCACAACCATATCTCATCAGGA
AACATCGGAAGGCAAGGCGACCCCCAAAGAGTATTCTCGAGGGGCATCGT
AGGCAGCGTTGGGAGCAACGCCCGCGGCAACCGCGGCGGGCTGGGGGGGC
TGGGGATGGCCGGGGGCAATAAAGCGCGGAGAGCTAGCGACTCCGTCACG
GGGGGTTACCACCTGCCCGACATTAACGCCGGGAAAAAGAAGCCCCGAGG
GGTCGGGGGGGGCGCCGTGGCGGCGGGATTGCCCCCGCTTGGGTCCGTGG
TCGGGTCGCCCGTCGTGTCGACGAGGACCGACCCCGGGTGAACGATTGCT
GCTGCTGCTGTTGTGGCACCGATTGCTCGAGCTTGCTTGCTGGGAGCGAG
GTTGTTTATATTGGTTCTTTGTTGTCCCGTGTTCTTGTTTTTTATATGTC
CGAGATTCCTCTAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1779:11856..15271+

>mRNA_Ecto-sp13_S_contig1779.5396.1 ID=mRNA_Ecto-sp13_S_contig1779.5396.1|Name=mRNA_Ecto-sp13_S_contig1779.5396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1422bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1779:11856..15271+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAACAGGTCATCGGTGGCGGCGGCGGCGGCGCCGAGAATAGCACTAG
CGTCGCCGACGCTGCCGCCGCGGCCGCGGCCACCGACGGTGCTGCGAGCG
AGCCTGAGAGTACAGCTCAGACCGAGCGACATTCCTTGCCGACTGTAGCG
GTCAGCGGAAGCGAAGATCCTACCGCCGCCTCCCCAGATCTGGGAACAGG
GGCTGGGGACCCGACACCGGCAGCAGTAGCAGCAGCTGAGGGGGAGGCGG
CAGCAGCGGCGGCTAAGGCGGATGCAAAGACCCCGGCCGGAGATGGCGGC
GGTAGTTGCGAAATAGGAGCGGTCGGGGGGGGCGTGCTCTCTGTCTCTGA
TTGTGGTCGTGGTGGAGTTAGTGGCAGCGATTGTGGTGGTGACGGTGGTA
GTGGTGACGGTGGTGATGGTGATGATGGTGGTGGTGGTGGTGGTGGTGGC
TCTGGAGATGGTGCTGGCTGTGGAAAAGGTGGTGGCTCCGAAGATGGTGC
TGGCGCTGGCTCTGATGAAACTGACGATGGCGGCGGACACGGTGGGGACA
ATGCCGTTGCCGCCGGGGACGAGGAGAAGGCCACGGACGGCGGGGCGGTC
GACCCCGACCCTAGCTCAAAGGACCAGCCCGGGGAGCACCTGTCGACCAA
ATACACGAAGGAAGAGCTGATGGCGAGACACTGGGGCATGAACTTGATGC
AGATGAAGCGAGTCAAGGCGCTCCTGAGGATGGGTGTCTGCGAGGAGGAC
CTCGAAATAGCGGACAGGCTGCTAAAGATGGGCCTGAACTGGTCGAACGA
CACCCCGCCCACGAAGGAGGAGCAGCTCTTGGGCTACACCTCGCAGCAGA
GGCAGCGGATGAAGGCTCTACACATCTTGGGCCTTACGGAGGAGTCCTTC
GACCGCTGCCGGGCGGTCATGCTGAGCTCCCTCGGGCCCTCGGCGTTTGG
GTACTCCGCGGACGAGACGGCGGCGTCAGCGGTGAGCGCGGAGGCGGAGG
AGGGCTGGACGCCCGGGGACAAGTTCCGGAGAAGAGCGGCCCCGAGCGGC
GGCGGTGGCGGCCACCACCACACCGGGATGCTAAGGATGCCGACGTTTAG
CCAAAGCAGTCACAACCATATCTCATCAGGAAACATCGGAAGGCAAGGCG
ACCCCCAAAGAGTATTCTCGAGGGGCATCGTAGGCAGCGTTGGGAGCAAC
GCCCGCGGCAACCGCGGCGGGCTGGGGGGGCTGGGGATGGCCGGGGGCAA
TAAAGCGCGGAGAGCTAGCGACTCCGTCACGGGGGGTTACCACCTGCCCG
ACATTAACGCCGGGAAAAAGAAGCCCCGAGGGGTCGGGGGGGGCGCCGTG
GCGGCGGGATTGCCCCCGCTTGGGTCCGTGGTCGGGTCGCCCGTCGTGTC
GACGAGGACCGACCCCGGGTGA
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