mRNA_Ecto-sp13_S_contig17778.5386.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17778.5386.1 vs. uniprot
Match: A0A6H5L234_9PHAE (SpoU_methylase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L234_9PHAE) HSP 1 Score: 303 bits (777), Expect = 2.250e-99 Identity = 154/161 (95.65%), Postives = 157/161 (97.52%), Query Frame = 1
Query: 1 MCSSLVDKVPNIAGLARTSEIFAATKLVVPDLRVMKNPAFTKISTGAEQWLPVEEVGEEQLVAWLRRVKKRRAGGGGHVLVGIEQTNNSICLTKVCYRGFHRHLAYTLVLGRENSGLPLDVIGEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQMLVDS 483
MC+SLVDKVPNIAGLARTSEIFAATKLVVPDLRVMK+PAFTKISTGAEQWLPVEEVGEEQLVAWLRRVKKRRAGGGGHVLVGIEQTNNSICLTK+ FHRHLAYTLVLGRENSGLPLDVIGEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQMLVDS
Sbjct: 340 MCASLVDKVPNIAGLARTSEIFAATKLVVPDLRVMKSPAFTKISTGAEQWLPVEEVGEEQLVAWLRRVKKRRAGGGGHVLVGIEQTNNSICLTKI---KFHRHLAYTLVLGRENSGLPLDVIGEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQMLVDS 497
BLAST of mRNA_Ecto-sp13_S_contig17778.5386.1 vs. uniprot
Match: A0A7S0GN51_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GN51_9STRA) HSP 1 Score: 150 bits (380), Expect = 1.180e-43 Identity = 76/161 (47.20%), Postives = 110/161 (68.32%), Query Frame = 1
Query: 1 MCSSLVDKVPNIAGLARTSEIFAATKLVVPDLRVMKNPAFTKISTGAEQWLPVEEVGEEQLVAWLRRVKKRRAGGGGHVLVGIEQTNNSICLTKVCYRGFHRHLAYTLVLGRENSGLPLDVIGEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQMLVDS 483
+C+SL+DK+PN+AGLART+EIFAA KL+VPDLRV K F IS GA +W+ +EE E L+ WL + K+ + +VGIEQT++S C++ + L+LG+E G+P++ + +DVC +IPQ G++RSLN HVSGAI + EYS+Q +V +
Sbjct: 10 VCASLIDKIPNLAGLARTAEIFAAQKLIVPDLRVQKMDNFKSISVGANEWITIEECPERDLLDWLLKRKEEC-----YTIVGIEQTSSSGCISDYKFPK-----KTVLLLGKEREGIPIEFLHVVDVCVEIPQLGIIRSLNVHVSGAISIWEYSKQQMVKN 160
BLAST of mRNA_Ecto-sp13_S_contig17778.5386.1 vs. uniprot
Match: A0A7S1ZWU9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZWU9_9STRA) HSP 1 Score: 146 bits (368), Expect = 2.130e-41 Identity = 70/158 (44.30%), Postives = 109/158 (68.99%), Query Frame = 1
Query: 1 MCSSLVDKVPNIAGLARTSEIFAATKLVVPDLRVMKNPAFTKISTGAEQWLPVEEVGEEQLVAWLRRVKKRRAGGGGHVLVGIEQTNNSICLTKVCYRGFHRHLAYTLVLGRENSGLPLDVIGEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQML 474
+C++LVDKVPN+AGLART+EIFAA +LV+PD V K F +S A W+ +EE E+ L++WL+ ++ G+ +VG+EQT++S C++K + G L+LG+E G+P++ + +D C +IPQ G++RSLN HV+GAI + EY++QM+
Sbjct: 44 ICATLVDKVPNLAGLARTAEIFAADRLVIPDTSVCKMDIFKSVSVSAGDWITIEECKEDGLLSWLKHQREN-----GYKIVGLEQTSSSSCISKTEFTG-----KTVLLLGKEKEGIPVEFLQVVDACVEIPQLGIVRSLNVHVTGAIAIWEYTKQMM 191
BLAST of mRNA_Ecto-sp13_S_contig17778.5386.1 vs. uniprot
Match: A0A7S4N1C3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N1C3_9STRA) HSP 1 Score: 156 bits (394), Expect = 4.670e-41 Identity = 77/158 (48.73%), Postives = 110/158 (69.62%), Query Frame = 1
Query: 1 MCSSLVDKVPNIAGLARTSEIFAATKLVVPDLRVMKNPAFTKISTGAEQWLPVEEVGEEQLVAWLRRVKKRRAGGGGHVLVGIEQTNNSICLTKVCYRGFHRHLAYTLVLGRENSGLPLDVIGEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQML 474
+C+SL+DKVPN+AGLART+EIFAA +LVVPD V K F IS AE+W+ +EE E L++WL + K+ G+ +VG+EQT++SICL+ H L+LG+E G+P++ + +DVC +IPQ G++RSLN HVSGA+ + EYS+QM+
Sbjct: 1412 VCASLIDKVPNLAGLARTAEIFAADRLVVPDQSVRKMDNFKSISVSAEEWIRIEECKERDLLSWLNKRKQE-----GYTIVGVEQTSSSICLSS-----HHFDRKTVLLLGKEKEGIPVEFLSVVDVCVEIPQLGIIRSLNVHVSGALTIWEYSKQMM 1559
BLAST of mRNA_Ecto-sp13_S_contig17778.5386.1 vs. uniprot
Match: A0A1E7EQ52_9STRA (tRNA/rRNA methyltransferase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EQ52_9STRA) HSP 1 Score: 141 bits (356), Expect = 4.790e-40 Identity = 76/157 (48.41%), Postives = 107/157 (68.15%), Query Frame = 1
Query: 1 MCSSLVDKVPNIAGLARTSEIFAATKLVVPDLRVMKNPAFTKISTGAEQWLPVEEVGEEQLVAWLRRVKKRRAGGGGHVLVGIEQTNNSICLTKVCYRGFHRHLAYT-LVLGRENSGLPLDVIGEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQ 468
+C+SLVDK+PN+AGLARTSEIFAA LV+PDL V K F IS GA W+ +EEV EQL++WL + K G+ +VG+EQT++S L ++ F ++ T L+LG+E G+P+ + +D C +IPQ G++RSLN HVSGAI + E +R+
Sbjct: 6 ICASLVDKIPNLAGLARTSEIFAAKSLVIPDLSVTKMDNFKSISVGAADWINIEEVKIEQLLSWLLKKKAE-----GYWIVGLEQTSSSSPLHEINIPTFAQNNNKTVLLLGKEKEGIPVQFLQTVDTCIEIPQFGMIRSLNVHVSGAITIWELTRK 157
BLAST of mRNA_Ecto-sp13_S_contig17778.5386.1 vs. uniprot
Match: D8U9Y0_VOLCA (SpoU_methylase domain-containing protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U9Y0_VOLCA) HSP 1 Score: 141 bits (355), Expect = 7.210e-40 Identity = 77/157 (49.04%), Postives = 103/157 (65.61%), Query Frame = 1
Query: 1 MCSSLVDKVPNIAGLARTSEIFAATKLVVPDLRVMKNPAFTKISTGAEQWLPVEEVGEEQLVAWLRRVKKRRAGGGGHVLVGIEQTNNSICLTKVCYRGFHRHLAYTLVLGRENSGLPLDVIGEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQM 471
+ +SL+DK+PN+AGLART E+ A +LV+ DL ++P FT +S AEQWLP+EEV L+AWL +RRA G + LVG+EQT S+ L + LVLGRE G+P +V+ +D +IPQ+G++RSLN HVSGAI L EY RQM
Sbjct: 3 LVASLIDKLPNLAGLARTCEVMGAGRLVLADLAATRDPVFTSVSVTAEQWLPMEEVKPAALLAWL----ERRAAEG-YTLVGLEQTAQSVRLPD-----YRWPAKVVLVLGREKEGIPPEVLSLLDATLEIPQRGIIRSLNVHVSGAIALYEYVRQM 149
BLAST of mRNA_Ecto-sp13_S_contig17778.5386.1 vs. uniprot
Match: A0A7S2RYK0_9STRA (Hypothetical protein n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RYK0_9STRA) HSP 1 Score: 152 bits (384), Expect = 1.010e-39 Identity = 75/160 (46.88%), Postives = 113/160 (70.62%), Query Frame = 1
Query: 1 MCSSLVDKVPNIAGLARTSEIFAATKLVVPDLRVMKNPAFTKISTGAEQWLPVEEVGEEQLVAWLRRVKKRRAGGGGHVLVGIEQTNNSICLTKVCYRGFHRHLAYTLVLGRENSGLPLDVIGEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQMLVD 480
+C+SL+DKVPN+AGLART+EIFAA +L++PD+ V K F IS GA +W+ +EE E+ L++WL + K+ G+ +VGIEQT++S CL+K+ + L+LG+E G+P++ + +DVC +IPQ G++RSLN HVSGAI + EY++QM+
Sbjct: 1010 VCASLIDKVPNLAGLARTAEIFAADRLIIPDVGVCKMDNFKSISVGAGEWIKIEECKEKDLLSWLNQRKEE-----GYNIVGIEQTSSSQCLSKLEFGA-----KTVLLLGKEKEGIPVEFLQVVDVCVEIPQLGIIRSLNVHVSGAISIWEYTKQMMAQ 1159
BLAST of mRNA_Ecto-sp13_S_contig17778.5386.1 vs. uniprot
Match: A0A7R9V1J9_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V1J9_9CHLO) HSP 1 Score: 140 bits (354), Expect = 4.880e-39 Identity = 79/156 (50.64%), Postives = 102/156 (65.38%), Query Frame = 1
Query: 1 MCSSLVDKVPNIAGLARTSEIFAATKLVVPDLRVMKNPAFTKISTGAEQWLPVEEVGEEQLVAWLRRVKKRRAGGGGHVLVGIEQTNNSICLTKVCYRGFHRHLAYTLVLGRENSGLPLDVIGEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQ 468
+C+SL+DK+PN+AGLART E+F A+ L VPDLRV +PAF IS AEQW+ + EV E L+ WL R + G+ L+G+EQT S L + F R LVLGRE GLP +V+ +D +IPQ G++RSLN HVSGAI L EY+RQ
Sbjct: 61 ICASLIDKLPNLAGLARTCEVFRASALAVPDLRVASDPAFASISVTAEQWVNMVEVKEGALLPWLLRKQAE-----GYALLGLEQTAESARLHEY---EFPRRCV--LVLGREKEGLPAEVLSLLDATLEIPQLGLIRSLNVHVSGAIALYEYTRQ 206
BLAST of mRNA_Ecto-sp13_S_contig17778.5386.1 vs. uniprot
Match: A0A2D4CC22_PYTIN (DNA helicase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CC22_PYTIN) HSP 1 Score: 150 bits (378), Expect = 6.910e-39 Identity = 81/158 (51.27%), Postives = 109/158 (68.99%), Query Frame = 1
Query: 1 MCSSLVDKVPNIAGLARTSEIFAATKLVVPDLRVMKNPAFTKISTGAEQWLPVEEVGEEQLVAWLRRVKKRRAGGGGHVLVGIEQTNNSICLTKVCYRGFHRHLAYTLVLGRENSGLPLDVIGEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQML 474
+C+SLVDKVPN+AGLART EIF A++LVVP LRV + AF IS A +W+P+EEV E LVA L+R K G +V +EQT +S CL++ + +VLG+E G+P+DV+ +DVC +IPQ G++RSLN HVSGAI+L EY++Q L
Sbjct: 1659 LCASLVDKVPNLAGLARTCEIFNASRLVVPSLRVCDDEAFETISVTANKWIPMEEVRAEHLVAALQRWKS-----DGFTIVAVEQTASSQCLSQFTFPE-----KIVIVLGKEKEGIPVDVLQMVDVCVEIPQFGLIRSLNVHVSGAILLWEYTQQRL 1806
BLAST of mRNA_Ecto-sp13_S_contig17778.5386.1 vs. uniprot
Match: A0A485LJX2_9STRA (Aste57867_22375 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJX2_9STRA) HSP 1 Score: 148 bits (373), Expect = 3.110e-38 Identity = 74/161 (45.96%), Postives = 114/161 (70.81%), Query Frame = 1
Query: 1 MCSSLVDKVPNIAGLARTSEIFAATKLVVPDLRVMKNPAFTKISTGAEQWLPVEEVGEEQLVAWLRRVKKRRAGGGGHVLVGIEQTNNSICLTKVCYRGFHRHLAYTLVLGRENSGLPLDVIGEMDVCCQIPQQGVLRSLNAHVSGAIILAEYSRQMLVDS 483
MC+SLVDK+PN+AGLART EIF A+KL++P++ + ++ F +IS A QW+ +E+V +++ +LRR+KK+ G+ +V +EQT++S CLT+ F +VLG E G+P+D++ +D+C +IPQ GV+RSLN HVSGAI+L Y++Q L+ S
Sbjct: 1316 MCASLVDKIPNVAGLARTCEIFNASKLLIPNMSMTEDILFRQISVTANQWVNMEQVKPDEVREYLRRMKKQ-----GYAIVALEQTSSSACLTQ-----FQFPDKVVIVLGNEKEGIPVDILQAVDLCVEIPQMGVIRSLNVHVSGAILLWAYTQQRLLHS 1466 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17778.5386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17778.5386.1 >prot_Ecto-sp13_S_contig17778.5386.1 ID=prot_Ecto-sp13_S_contig17778.5386.1|Name=mRNA_Ecto-sp13_S_contig17778.5386.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=162bp MCSSLVDKVPNIAGLARTSEIFAATKLVVPDLRVMKNPAFTKISTGAEQWback to top mRNA from alignment at Ecto-sp13_S_contig17778:486..2559- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17778.5386.1 ID=mRNA_Ecto-sp13_S_contig17778.5386.1|Name=mRNA_Ecto-sp13_S_contig17778.5386.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2074bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17778:486..2559- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17778:486..2559- >mRNA_Ecto-sp13_S_contig17778.5386.1 ID=mRNA_Ecto-sp13_S_contig17778.5386.1|Name=mRNA_Ecto-sp13_S_contig17778.5386.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17778:486..2559- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |