mRNA_Ecto-sp13_S_contig17772.5385.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17772.5385.1
Unique NamemRNA_Ecto-sp13_S_contig17772.5385.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17772.5385.1 vs. uniprot
Match: D8LMB8_ECTSI (Bardet-Biedl syndrome 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB8_ECTSI)

HSP 1 Score: 251 bits (641), Expect = 2.740e-76
Identity = 125/128 (97.66%), Postives = 125/128 (97.66%), Query Frame = 1 
Query:  187 ESGGDTRFLNMNREVTGLAAGRLEESARRDMLLVGSQTNLLAHDVENNADIYYKDVADGVSAVLLGCLPPSQQPLALVGGNCSVQGFDATGAERFWTVTGDKVSSMTMADANGDGQRKLLVGSDDFEV 570
            ESGGDTRFLNMNREVTGLAAGRLEESA RDMLLVGSQTNLLAHDVENNADIYYKDVADGVSAVLLGCLPPSQQPLALVGGNCSVQGFDATG ERFWTVTGDKVSSMTM DANGDGQRKLLVGSDDFEV
Sbjct:    9 ESGGDTRFLNMNREVTGLAAGRLEESAGRDMLLVGSQTNLLAHDVENNADIYYKDVADGVSAVLLGCLPPSQQPLALVGGNCSVQGFDATGTERFWTVTGDKVSSMTMVDANGDGQRKLLVGSDDFEV 136
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BLAST of mRNA_Ecto-sp13_S_contig17772.5385.1 vs. uniprot
Match: A0A7S1G4Y1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4Y1_9STRA)

HSP 1 Score: 209 bits (531), Expect = 2.620e-60
Identity = 101/189 (53.44%), Postives = 129/189 (68.25%), Query Frame = 1 
Query:   19 FTFHLNHPVKTGLVCVGKYDGKRPSLTCATSAGKILVHCPISHHGLSPSGAG-----VDTNESGGDTRFLNMNREVTGLAAGRLEESARRDMLLVGSQTNLLAHDVENNADIYYKDVADGVSAVLLGCLPPSQQPLALVGGNCSVQGFDATGAERFWTVTGDKVSSMTMADANGDGQRKLLVGSDDFEV 570
            F  HLN+ +   L  VG YDGK PSLTC TSAGK+ +H P +    +  GAG       T+    D RFLN+NR+VT L +GRL+     D L VG+QTNLLA++ E+N+D+++KDV DGVS +L G +   + PL +VGGNCS+QGFDA G E FWTVTGD VS+M   DA+GDG  +LLVGSDDFE+
Sbjct:    6 FQLHLNNGINVRLATVGYYDGKHPSLTCGTSAGKVFIHSPHNREAPAAGGAGGSAYAAGTDPKNQDIRFLNINRKVTALTSGRLQVDGDGDTLCVGTQTNLLAYNTEDNSDLFFKDVPDGVSTLLFGKVQTIEAPLVVVGGNCSIQGFDAAGLELFWTVTGDNVSAMAFCDADGDGNNELLVGSDDFEI 194
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BLAST of mRNA_Ecto-sp13_S_contig17772.5385.1 vs. uniprot
Match: A0A7S0E3E9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E3E9_9EUKA)

HSP 1 Score: 203 bits (517), Expect = 4.970e-60
Identity = 97/185 (52.43%), Postives = 129/185 (69.73%), Query Frame = 1 
Query:   16 AFTFHLNHPVKTGLVCVGKYDGKRPSLTCATSAGKILVHCPISHHGLSPSGAGVDTNESGGDTRFLNMNREVTGLAAGRLEESARRDMLLVGSQTNLLAHDVENNADIYYKDVADGVSAVLLGCLPPSQQPLALVGGNCSVQGFDATGAERFWTVTGDKVSSMTMADANGDGQRKLLVGSDDFEV 570
            AF   LN+P+  GLV VGKYDG+ PSLTCAT+AGKI  H P    G +             + +FLN+NR+++ L  GRL    +RD+L VG+QT LLA+DV+ N D+++KD  DG +A+L+G L   + PLALVGGNCS+QG+DA G+E FWTVTGD VS+M   D +GDGQ +LLVGS+D+E+
Sbjct:    5 AFKLQLNNPILKGLVDVGKYDGEYPSLTCATTAGKIFFHTPHDKSGQN-------------EVKFLNINRKISALTCGRLATKHQRDLLFVGAQTTLLAYDVQENCDLFFKDAPDGANAILVGKLGDLEAPLALVGGNCSIQGYDAEGSEEFWTVTGDNVSAMAFCDVDGDGQLELLVGSEDYEI 176
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BLAST of mRNA_Ecto-sp13_S_contig17772.5385.1 vs. uniprot
Match: A0A836CLB0_9STRA (Ciliary BBSome complex subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLB0_9STRA)

HSP 1 Score: 204 bits (518), Expect = 3.310e-58
Identity = 104/190 (54.74%), Postives = 130/190 (68.42%), Query Frame = 1 
Query:    1 MKIAAAFTFHLNHPVKTGLVCVGKYDGKRPSLTCATSAGKILVHCPISHHGLSPSGAGVDTNESGGDTRFLNMNREVTGLAAGRLEESARRDMLLVGSQTNLLAHDVENNADIYYKDVADGVSAVLLGCLPPSQQPLALVGGNCSVQGFDATGAERFWTVTGDKVSSMTMADANGDGQRKLLVGSDDFEV 570
            M+++ AF F+L   +K    C+GKYDGK P LT AT+AGK+L+H   +H      G   D        +FLN+NR+VT LAAGRL   A  D L V S+TNLLA+ VE N D++YK+V DG S + +G LP + QPLA+VGGNCS+QGFD  G ERFWTVTGD V++MT  DANGDG  +LLVGS DFEV
Sbjct:    1 MQLSPAFEFNLGTSIKPKQACIGKYDGKHPCLTVATAAGKVLIH--NAHEKALQQGGTADPA-----IKFLNINRKVTSLAAGRLAADAACDTLFVCSETNLLAYAVEQNKDLFYKEVPDGASVIAIGTLPGAGQPLAVVGGNCSLQGFDEDGEERFWTVTGDHVTAMTFVDANGDGAAELLVGSADFEV 183
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BLAST of mRNA_Ecto-sp13_S_contig17772.5385.1 vs. uniprot
Match: UPI001EAFE987 (Bardet-Biedl syndrome 2 protein homolog n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EAFE987)

HSP 1 Score: 203 bits (516), Expect = 4.900e-58
Identity = 96/184 (52.17%), Postives = 128/184 (69.57%), Query Frame = 1 
Query:   19 FTFHLNHPVKTGLVCVGKYDGKRPSLTCATSAGKILVHCPISHHGLSPSGAGVDTNESGGDTRFLNMNREVTGLAAGRLEESARRDMLLVGSQTNLLAHDVENNADIYYKDVADGVSAVLLGCLPPSQQPLALVGGNCSVQGFDATGAERFWTVTGDKVSSMTMADANGDGQRKLLVGSDDFEV 570
            FT  LNH V   +V +GKYDG  PSLTCAT+AGK+L+H P   H  S  G G     S  D   LN+N++V+ + AG+L  S   D+L+VG+QTNL+A+DV+NN+D++YKD  DG +AV++G L     PLA+VGGNCS+ GFD  G + FWTVTGD V S+ M D N DGQ +L+VGS+DF++
Sbjct:    6 FTLKLNHKVNPHMVTIGKYDGTHPSLTCATTAGKVLIHSP---HTRSQRGMGPIVASSENDISLLNINQQVSSVCAGKLHTSNMNDVLVVGTQTNLIAYDVDNNSDLFYKDTPDGSNAVVIGQLGTISTPLAIVGGNCSIMGFDQDGNDSFWTVTGDNVCSLAMVDFNNDGQNELIVGSEDFDI 186
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BLAST of mRNA_Ecto-sp13_S_contig17772.5385.1 vs. uniprot
Match: A0A7S0T4B9_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T4B9_9CHLO)

HSP 1 Score: 191 bits (486), Expect = 1.130e-57
Identity = 92/190 (48.42%), Postives = 125/190 (65.79%), Query Frame = 1 
Query:    1 MKIAAAFTFHLNHPVKTGLVCVGKYDGKRPSLTCATSAGKILVHCPISHHGLSPSGAGVDTNESGGDTRFLNMNREVTGLAAGRLEESARRDMLLVGSQTNLLAHDVENNADIYYKDVADGVSAVLLGCLPPSQQPLALVGGNCSVQGFDATGAERFWTVTGDKVSSMTMADANGDGQRKLLVGSDDFEV 570
            M +  AF   L   V  GL  VGKYDGK P LT ATS GKI +H P                  G + ++LN+N++++ ++ G L+ +++RD+LLVG+ T+LLA+DV+ N D ++KDV DGV+A+L G       P+A+VGGNCS+QGFD  G E FWTVTGD V +M +AD NGDG+ +LLVGSDDFE+
Sbjct:    1 MPLVPAFQLRLKDQVLEGLATVGKYDGKHPCLTAATSGGKIFIHNPYQQEA------------DGSNLKYLNINKKISAVSHGELDPASKRDVLLVGTNTDLLAYDVDENKDHFFKDVPDGVNAMLCGRFGQQDAPMAVVGGNCSIQGFDMDGEEGFWTVTGDNVHAMALADVNGDGRNELLVGSDDFEI 178
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BLAST of mRNA_Ecto-sp13_S_contig17772.5385.1 vs. uniprot
Match: UPI001B88DF7C (Bardet-Biedl syndrome 2 protein homolog n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88DF7C)

HSP 1 Score: 199 bits (505), Expect = 1.880e-56
Identity = 93/184 (50.54%), Postives = 133/184 (72.28%), Query Frame = 1 
Query:   19 FTFHLNHPVKTGLVCVGKYDGKRPSLTCATSAGKILVHCPISHHGLSPSGAGVDTNESGGDTRFLNMNREVTGLAAGRLEESARRDMLLVGSQTNLLAHDVENNADIYYKDVADGVSAVLLGCLPPSQQPLALVGGNCSVQGFDATGAERFWTVTGDKVSSMTMADANGDGQRKLLVGSDDFEV 570
            FT  LNH V   +V +GKYDG  PSL+CAT+AGK+++H P   H    +  G  +  + GD   LN+N++VT + AG L+ +A +D+L+VG+QTN+LA+DVENN+D++YKD  DG +A+++G L   + PLA++GGNCS+QGFD  G + FWTVTGD V S+ M D N DGQ +L+VGS+DF++
Sbjct:    6 FTLKLNHKVNARMVTIGKYDGTNPSLSCATTAGKVIIHNP---HNRGQN-TGRMSLSAEGDISLLNINQQVTSVCAGVLDGNAAKDVLVVGTQTNVLAYDVENNSDLFYKDTPDGSNAIIVGKLGSIETPLAIIGGNCSIQGFDKGGNDSFWTVTGDNVCSLAMLDFNADGQNELIVGSEDFDI 185
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BLAST of mRNA_Ecto-sp13_S_contig17772.5385.1 vs. uniprot
Match: A0A8J5K3N8_HOMAM (Bardet-Biedl syndrome 2-like n=2 Tax=Astacidea TaxID=6712 RepID=A0A8J5K3N8_HOMAM)

HSP 1 Score: 196 bits (498), Expect = 1.550e-55
Identity = 92/184 (50.00%), Postives = 129/184 (70.11%), Query Frame = 1 
Query:   19 FTFHLNHPVKTGLVCVGKYDGKRPSLTCATSAGKILVHCPISHHGLSPSGAGVDTNESGGDTRFLNMNREVTGLAAGRLEESARRDMLLVGSQTNLLAHDVENNADIYYKDVADGVSAVLLGCLPPSQQPLALVGGNCSVQGFDATGAERFWTVTGDKVSSMTMADANGDGQRKLLVGSDDFEV 570
            FT +LN  +  G VC+GKYDG    LT +T+A K+ +H   SH  L  SG  +  ++S  +   LN+N+ V+ L AGRL  S   D+L+VG+ TN+LA+DV+NNAD++YKDV+DG +A+ +G L     PLAL+GGNCS+ GFD+ G + FWTVTGD VSS+T+ D +GD + +LLVGS+DFE+
Sbjct:    6 FTINLNQKILPGRVCIGKYDGAHSCLTASTTADKVFIH--NSHQRLGVSGGRMSISQSSAEVSLLNINQTVSALTAGRLSPSKHSDILVVGTPTNVLAYDVQNNADVFYKDVSDGANAITIGKLGHYTSPLALIGGNCSIHGFDSEGNDPFWTVTGDNVSSITLTDFDGDDENELLVGSEDFEI 187
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BLAST of mRNA_Ecto-sp13_S_contig17772.5385.1 vs. uniprot
Match: UPI0003F0A3F5 (Bardet-Biedl syndrome 2 protein homolog n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0A3F5)

HSP 1 Score: 194 bits (492), Expect = 1.030e-54
Identity = 91/184 (49.46%), Postives = 128/184 (69.57%), Query Frame = 1 
Query:   19 FTFHLNHPVKTGLVCVGKYDGKRPSLTCATSAGKILVHCPISHHGLSPSGAGVDTNESGGDTRFLNMNREVTGLAAGRLEESARRDMLLVGSQTNLLAHDVENNADIYYKDVADGVSAVLLGCLPPSQQPLALVGGNCSVQGFDATGAERFWTVTGDKVSSMTMADANGDGQRKLLVGSDDFEV 570
            FT  LNH +   +V +GK+DG+ P LTCAT+AGK+ VH P  H   +  G  VD      D   LN+N+ V+ + AG L   A  D L+VG+QTNLLA+DV+NN D++YKD+ DGV+A+++G L     PLA+VGGNC++QGFD  G + FWTVTGD V S+T+ D  GDG+++L+VGS+D+++
Sbjct:    6 FTLKLNHKINPRMVALGKFDGQHPCLTCATTAGKVFVHNP--HTRGARGGRAVDDGAIDTDISLLNINQAVSAVEAGPLSVDAVNDTLMVGTQTNLLAYDVQNNTDLFYKDIPDGVNAIIMGQLGNIDAPLAIVGGNCALQGFDIEGNDLFWTVTGDNVCSLTLCDFTGDGKKELVVGSEDYDI 187
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BLAST of mRNA_Ecto-sp13_S_contig17772.5385.1 vs. uniprot
Match: UPI00193DECF7 (Bardet-Biedl syndrome 2 protein homolog n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193DECF7)

HSP 1 Score: 181 bits (459), Expect = 1.790e-54
Identity = 88/190 (46.32%), Postives = 123/190 (64.74%), Query Frame = 1 
Query:    1 MKIAAAFTFHLNHPVKTGLVCVGKYDGKRPSLTCATSAGKILVHCPISHHGLSPSGAGVDTNESGGDTRFLNMNREVTGLAAGRLEESARRDMLLVGSQTNLLAHDVENNADIYYKDVADGVSAVLLGCLPPSQQPLALVGGNCSVQGFDATGAERFWTVTGDKVSSMTMADANGDGQRKLLVGSDDFEV 570
            M     FT HLN+ V  G + +GKYDG    LT AT+  K+L+H P               ++   +   LN+N+ +T L AGRL     +D+L+VG++ +LLA+ VENN+DI+Y+ V DGV+A+ +G L   + PLALVGGNCS+QGFDA G + FWTVTGD V S+ + D +GDG+ +L+VGSDDFE+
Sbjct:    1 MMAIPVFTLHLNYQVLPGRITIGKYDGSHCCLTAATTGDKVLIHSP---------------HKRDKEFSLLNINQNITALCAGRLNPDEEKDILVVGTKGSLLAYHVENNSDIFYRQVPDGVNAITIGRLGLLENPLALVGGNCSIQGFDAKGNDPFWTVTGDNVRSLALLDVDGDGENELVVGSDDFEL 175
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17772.5385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMB8_ECTSI2.740e-7697.66Bardet-Biedl syndrome 2 n=1 Tax=Ectocarpus silicul... [more]
A0A7S1G4Y1_9STRA2.620e-6053.44Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S0E3E9_9EUKA4.970e-6052.43Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A836CLB0_9STRA3.310e-5854.74Ciliary BBSome complex subunit 2 n=1 Tax=Tribonema... [more]
UPI001EAFE9874.900e-5852.17Bardet-Biedl syndrome 2 protein homolog n=2 Tax=Ha... [more]
A0A7S0T4B9_9CHLO1.130e-5748.42Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
UPI001B88DF7C1.880e-5650.54Bardet-Biedl syndrome 2 protein homolog n=1 Tax=Gi... [more]
A0A8J5K3N8_HOMAM1.550e-5550.00Bardet-Biedl syndrome 2-like n=2 Tax=Astacidea Tax... [more]
UPI0003F0A3F51.030e-5449.46Bardet-Biedl syndrome 2 protein homolog n=1 Tax=Sa... [more]
UPI00193DECF71.790e-5446.32Bardet-Biedl syndrome 2 protein homolog n=1 Tax=Ni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17772contigEcto-sp13_S_contig17772:1675..3603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score251.9
Seed ortholog evalue2.4e-64
Seed eggNOG ortholog2880.D8LMB8
Preferred nameBBS2
Model size570
KEGG koko:K16747
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0001085,GO:0001103,GO:0001501,GO:0001578,GO:0001894,GO:0001895,GO:0003006,GO:0003008,GO:0003012,GO:0003013,GO:0003018,GO:0003352,GO:0003356,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005902,GO:0005929,GO:0006810,GO:0006892,GO:0006893,GO:0006928,GO:0006936,GO:0006939,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007288,GO:0007368,GO:0007369,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007600,GO:0007601,GO:0007610,GO:0008015,GO:0008104,GO:0008134,GO:0008150,GO:0009605,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009892,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010605,GO:0010629,GO:0014820,GO:0014824,GO:0014829,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0019221,GO:0019222,GO:0019953,GO:0021537,GO:0021543,GO:0021544,GO:0021756,GO:0021761,GO:0021766,GO:0021987,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030317,GO:0030534,GO:0030900,GO:0031090,GO:0031253,GO:0031514,GO:0031667,GO:0032095,GO:0032096,GO:0032098,GO:0032099,GO:0032101,GO:0032102,GO:0032104,GO:0032105,GO:0032107,GO:0032108,GO:0032400,GO:0032401,GO:0032402,GO:0032420,GO:0032421,GO:0032501,GO:0032502,GO:0032504,GO:0032870,GO:0032879,GO:0032886,GO:0032991,GO:0033036,GO:0033059,GO:0033210,GO:0033365,GO:0034097,GO:0034464,GO:0034613,GO:0035082,GO:0035150,GO:0035296,GO:0036064,GO:0038108,GO:0040008,GO:0040011,GO:0040012,GO:0040014,GO:0040015,GO:0040018,GO:0042221,GO:0042310,GO:0042311,GO:0042592,GO:0042886,GO:0042995,GO:0043001,GO:0043005,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043473,GO:0044085,GO:0044320,GO:0044321,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045184,GO:0045444,GO:0045494,GO:0045926,GO:0045927,GO:0046907,GO:0048193,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048583,GO:0048585,GO:0048598,GO:0048609,GO:0048638,GO:0048639,GO:0048640,GO:0048731,GO:0048854,GO:0048856,GO:0048869,GO:0048870,GO:0048871,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050880,GO:0050896,GO:0050953,GO:0051093,GO:0051094,GO:0051179,GO:0051216,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051270,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051674,GO:0051704,GO:0051716,GO:0051875,GO:0051877,GO:0051904,GO:0051905,GO:0060170,GO:0060249,GO:0060255,GO:0060271,GO:0060295,GO:0060296,GO:0060322,GO:0060632,GO:0061448,GO:0061512,GO:0061951,GO:0065007,GO:0065008,GO:0070121,GO:0070491,GO:0070727,GO:0070887,GO:0070925,GO:0071310,GO:0071345,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090066,GO:0090150,GO:0097458,GO:0097722,GO:0097746,GO:0097755,GO:0097756,GO:0098588,GO:0098590,GO:0098858,GO:0098862,GO:0098876,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902019,GO:1903441,GO:1905515,GO:1990778,GO:2000145
Exons6
EggNOG free text desc.negative regulation of appetite by leptin-mediated signaling pathway
EggNOG OGs2C0K6@1,2QPWU@2759
Cds size570
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17772.5385.1prot_Ecto-sp13_S_contig17772.5385.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17772 1675..3603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462921.181642-CDS-Ecto-sp13_S_contig17772:1674..17471681462921.181642-CDS-Ecto-sp13_S_contig17772:1674..1747Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17772 1675..1747 +
1681462921.194297-CDS-Ecto-sp13_S_contig17772:2085..21991681462921.194297-CDS-Ecto-sp13_S_contig17772:2085..2199Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17772 2086..2199 +
1681462921.2030966-CDS-Ecto-sp13_S_contig17772:2253..22941681462921.2030966-CDS-Ecto-sp13_S_contig17772:2253..2294Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17772 2254..2294 +
1681462921.2110298-CDS-Ecto-sp13_S_contig17772:2664..27841681462921.2110298-CDS-Ecto-sp13_S_contig17772:2664..2784Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17772 2665..2784 +
1681462921.2212934-CDS-Ecto-sp13_S_contig17772:3117..32361681462921.2212934-CDS-Ecto-sp13_S_contig17772:3117..3236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17772 3118..3236 +
1681462921.2372642-CDS-Ecto-sp13_S_contig17772:3500..36031681462921.2372642-CDS-Ecto-sp13_S_contig17772:3500..3603Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17772 3501..3603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17772.5385.1

>prot_Ecto-sp13_S_contig17772.5385.1 ID=prot_Ecto-sp13_S_contig17772.5385.1|Name=mRNA_Ecto-sp13_S_contig17772.5385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=190bp
MKIAAAFTFHLNHPVKTGLVCVGKYDGKRPSLTCATSAGKILVHCPISHH
GLSPSGAGVDTNESGGDTRFLNMNREVTGLAAGRLEESARRDMLLVGSQT
NLLAHDVENNADIYYKDVADGVSAVLLGCLPPSQQPLALVGGNCSVQGFD
ATGAERFWTVTGDKVSSMTMADANGDGQRKLLVGSDDFEV
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mRNA from alignment at Ecto-sp13_S_contig17772:1675..3603+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17772.5385.1 ID=mRNA_Ecto-sp13_S_contig17772.5385.1|Name=mRNA_Ecto-sp13_S_contig17772.5385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1929bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17772:1675..3603+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGATCGCCGCAGCGTTCACCTTCCATCTCAACCACCCTGTCAAGAC
AGGCTTGGTCTGCGTTGGTAAATGTGAGTGCAGTATTTGTACGTATTAAA
TCACCAAACTGTTCTCTGTCTACCAACATGCACGCGGATACGATGGAAGG
CGTTCGGGCCACTGAACGACGCAGTGACGAAGAACTCACCTATACTGCTT
GTCAGGCGGTCAGCTGCCGGTCGTCAGTGGTCACACCCCGTAGGTACAGT
ATCGCCCTGTCCTCCACACCCATGATCTAGGACATATTTTGCAGCCCCAA
GATTTTTAATTGCCTTGACCTTTGCGCGCAGCTTCATGTAAGCTGCATGT
ACACACGAGGTACAACGGGTCGGTACTCGCCGAACTAACCTGGCCTTACT
CAACAACACAGATGACGGGAAACGGCCGTCGCTCACGTGTGCCACGTCGG
CGGGAAAGATTCTCGTGCACTGCCCGATCTCTCATCACGGCCTATCTCCC
AGTGGTGCCGGCGTTGATACAAACGGTGGTACTCCCGCGCAAGCGTTAAG
CTCCATTGCGTATCAGACCGGAGAGAAAGAGTCTGGCGGAGACACGCGTT
TCCTCAACATGAACCGTGAGGTATACAGGCCGGTCTACAAGTGTACCCAC
CTTGTAGCACTCCGCTACCCACCTTCATTCGTGAAACACCTGACATGCCC
TTCTTTTTACTGCCCCTTGCTTTTCGTGGGTCTCCATAATTTTTAGGGTA
GTCTTGAAGTCGTGCATGCGAGACAAACAGCGTGTTTCTGTCCGACGTTC
CGTTGTGGAATGTGTGTAATGAAGCATTTGCGGCCACCTCGGGTGAAGTG
TGCTCATAGGTACATGCAAATTCTTCACGGCGATCTTCTTCTCGTTCGCA
ACGTCACCTGCGGCGAAGGAAATACATCCTTGGATCTAGCTTTCGAATCT
TACGGCAACGCAACGGTTAAACGCACAATCTATCTATCAGGTTACTGGCC
TTGCAGCGGGGCGACTGGAAGAGTCCGCCCGCAGAGACATGCTGTTGGTA
GGTTCACAGACAAACCTTCTAGCACACGACGTGGAGAACAACGCGGACAT
CTACTACAAGGTAATGTAGAGAAATCGGACACGCCGTGACGTCGAAAGCG
TTTTCCGCTAGTCCACCGACCCGTGATGCCGTCCTTTGTAGGAGCTTTCC
GGTGAGGGATAAATCCCCCGACCTGATCTCGTACCGAGCGCCGTACCCTG
ACCCGAACTTTGCGCCAAAGTCACAACCCATTAGTAGGCCGGGACTTATC
AGTGACGACGAAGGCCCACGAGAGTTCTCCGGGCCACCAAATCCCTTGGC
GATACAACAGCTACCTTGCCCAACGTCAAAGAGTGCTTTGCAGAGCCTCG
TCCTCAAACGCATCGTCGATGCAACTGTGTAATACGAAACCAGGATGTAG
CCGATGGAGTGAGCGCGGTGCTGCTTGGGTGCCTGCCTCCCTCACAGCAA
CCACTGGCCCTTGTTGGAGGCAACTGCTCCGTACAGGGTTTCGACGCCAC
GGGCGCGGAGAGGTACTACATCTTCTGTTCTTGCTACTAAAGGCACGACG
TCGCGCTTGGCTACATCGTAGAGCTATTTCTCGTGTCATACGAAGTATCG
TGCTGTAACCAACATACATGTGTGGGGAGGCCCCCTCTGGTCGTGGTGGT
GAACTGTTTCCCATCAACCTGGTTCTTCACTTGGTCGGTGGGCAGCTAAA
ATACCAAGTTACATGCTTTCAGCAGTTTTGCTTCAACGGCACCAGCAGCT
AAAAGGCCTGCCCCCGATTCGTTCAGGTTCTGGACGGTTACCGGTGACAA
AGTTTCTTCGATGACGATGGCAGACGCTAACGGGGATGGGCAACGAAAGC
TTCTTGTCGGAAGTGATGACTTCGAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17772:1675..3603+

>mRNA_Ecto-sp13_S_contig17772.5385.1 ID=mRNA_Ecto-sp13_S_contig17772.5385.1|Name=mRNA_Ecto-sp13_S_contig17772.5385.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17772:1675..3603+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGATCGCCGCAGCGTTCACCTTCCATCTCAACCACCCTGTCAAGAC
AGGCTTGGTCTGCGTTGGTAAATATGACGGGAAACGGCCGTCGCTCACGT
GTGCCACGTCGGCGGGAAAGATTCTCGTGCACTGCCCGATCTCTCATCAC
GGCCTATCTCCCAGTGGTGCCGGCGTTGATACAAACGAGTCTGGCGGAGA
CACGCGTTTCCTCAACATGAACCGTGAGGTTACTGGCCTTGCAGCGGGGC
GACTGGAAGAGTCCGCCCGCAGAGACATGCTGTTGGTAGGTTCACAGACA
AACCTTCTAGCACACGACGTGGAGAACAACGCGGACATCTACTACAAGGA
TGTAGCCGATGGAGTGAGCGCGGTGCTGCTTGGGTGCCTGCCTCCCTCAC
AGCAACCACTGGCCCTTGTTGGAGGCAACTGCTCCGTACAGGGTTTCGAC
GCCACGGGCGCGGAGAGGTTCTGGACGGTTACCGGTGACAAAGTTTCTTC
GATGACGATGGCAGACGCTAACGGGGATGGGCAACGAAAGCTTCTTGTCG
GAAGTGATGACTTCGAGGTA
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