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Homology
BLAST of mRNA_Ecto-sp13_S_contig1777.5384.1 vs. uniprot
Match: D7FLJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ4_ECTSI) HSP 1 Score: 121 bits (303), Expect = 2.360e-25 Identity = 57/63 (90.48%), Postives = 58/63 (92.06%), Query Frame = 1
Query: 496 IQSGASTWDEKRGKCVRLARYQRVLHVVWAALGVSIQHIVSWPGGVRRLTFLEDFNQDLRWVL 684
+Q GASTWDEK G CVRLARYQRVLHVVWAALGVSIQ IVSWPGGVRRLTFLE FNQDLRWVL
Sbjct: 1 MQGGASTWDEKGGICVRLARYQRVLHVVWAALGVSIQRIVSWPGGVRRLTFLEGFNQDLRWVL 63
BLAST of mRNA_Ecto-sp13_S_contig1777.5384.1 vs. uniprot
Match: A0A6H5JK24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK24_9PHAE) HSP 1 Score: 115 bits (288), Expect = 3.000e-24 Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 1
Query: 496 IQSGASTWDEKRGKCVRLARYQRVLHVVWAALGVSIQHIVSWPGGVRRLTFLEDFNQDLRWVL 684
+Q GASTWDE+ G CVRLARYQRVLHVVWAALGVSIQ IVSWPGG RLTFLEDF+QDLRWVL
Sbjct: 1 MQGGASTWDEEGGICVRLARYQRVLHVVWAALGVSIQRIVSWPGGEGRLTFLEDFDQDLRWVL 63
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 3362 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Cds size | 1701 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462921.080469-UTR-Ecto-sp13_S_contig1777:9321..9423 | 1681462921.080469-UTR-Ecto-sp13_S_contig1777:9321..9423 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1777 9322..9423 + |
| 1681462921.1432128-UTR-Ecto-sp13_S_contig1777:13124..14683 | 1681462921.1432128-UTR-Ecto-sp13_S_contig1777:13124..14683 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1777 13125..14683 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462921.0913806-CDS-Ecto-sp13_S_contig1777:9423..10488 | 1681462921.0913806-CDS-Ecto-sp13_S_contig1777:9423..10488 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1777 9424..10488 + |
| 1681462921.1017613-CDS-Ecto-sp13_S_contig1777:11202..11378 | 1681462921.1017613-CDS-Ecto-sp13_S_contig1777:11202..11378 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1777 11203..11378 + |
| 1681462921.1110024-CDS-Ecto-sp13_S_contig1777:12025..12125 | 1681462921.1110024-CDS-Ecto-sp13_S_contig1777:12025..12125 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1777 12026..12125 + |
| 1681462921.1210287-CDS-Ecto-sp13_S_contig1777:12389..12575 | 1681462921.1210287-CDS-Ecto-sp13_S_contig1777:12389..12575 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1777 12390..12575 + |
| 1681462921.1307566-CDS-Ecto-sp13_S_contig1777:12950..13124 | 1681462921.1307566-CDS-Ecto-sp13_S_contig1777:12950..13124 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1777 12951..13124 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1777.5384.1 >prot_Ecto-sp13_S_contig1777.5384.1 ID=prot_Ecto-sp13_S_contig1777.5384.1|Name=mRNA_Ecto-sp13_S_contig1777.5384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=567bp
MALHSTWCHNPVKSPTKEILAMKPSSPNPPSPTITSLAALQLAFASGYEG HHQPQLVCLDTCNACRESVAIRLRLTDRMPPSLSALFFATPHVTIAGQQN NKYIDENGNATATTTRGGILFVTPTSSPQLSIQSGASTWDEKRGKCVRLA RYQRVLHVVWAALGVSIQHIVSWPGGVRRLTFLEDFNQDLRWVLWPEGLR ELTFREGFNQPMEDVVFPKGLERLSLGADFNQDIQNASFPPALTFLSLGA SFNHPLEGAELPKSLQRLVWGQLFDQPVERVRWPPALQSIAFGDAFNHPV EQAEFPARVQSLQLGKAFDQQVERVAWPERLESLSFAHDFNHPVAEMSWP EGVKEVSFGYNFDKPLSGVKWPSYLESVIFGFRYNKSLDNVTWPALCRSI QLGESFNLPLHGISWPQGLLELDLGDDFNHPLEGVTLPAGLERLYLSVFF NQPVVAVEWPEGLLELDFGLNFNMPIEGTSFPWGLQSVCFGRCFNQDVTR VSWPGELTRIAFGRAFVGALEGDSWPPPKLEVLDLGSKFHAKHRIDESNL RQGCQVFYLYVPGSDY* back to topmRNA from alignment at Ecto-sp13_S_contig1777:9322..14683+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig1777.5384.1 ID=mRNA_Ecto-sp13_S_contig1777.5384.1|Name=mRNA_Ecto-sp13_S_contig1777.5384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5362bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1777:9322..14683+ (Ectocarpus species13 EcNAP12_S_4_19m) CGGCAAGATCGAGAGAGAGAGCGGTTGACGAACGTTAAACGTTCGTGCAC
GATCTCCTTCGTATGCGCTCCTTCGCTGAACGTTGTTGATGGTCTACTGT
ACATGGCTCTTCACTCCACCTGGTGTCACAATCCGGTCAAGTCTCCGACG
AAGGAGATTTTAGCGATGAAGCCATCATCTCCAAATCCACCATCGCCCAC
AATAACGTCACTAGCGGCGCTTCAGCTAGCGTTCGCTTCTGGATACGAGG
GCCATCACCAGCCGCAGTTGGTATGTCTCGACACCTGCAATGCCTGTCGT
GAATCGGTGGCCATCCGTTTACGTCTCACAGACCGCATGCCGCCGTCCCT
CAGCGCCTTGTTCTTCGCCACTCCACACGTGACGATTGCAGGGCAGCAAA
ATAACAAGTACATCGACGAAAATGGTAACGCCACCGCCACCACCACCAGG
GGCGGAATTTTGTTTGTCACGCCCACCTCTTCGCCACAACTATCGATACA
GAGTGGCGCGAGCACCTGGGATGAGAAACGGGGGAAATGTGTTCGGCTTG
CGAGATACCAAAGGGTATTGCATGTTGTGTGGGCGGCTCTGGGCGTATCG
ATTCAACACATTGTGTCATGGCCGGGTGGCGTACGCCGGCTCACGTTCTT
GGAGGACTTCAACCAAGATCTACGGTGGGTGCTATGGCCAGAGGGACTGC
GGGAGCTGACCTTTCGAGAGGGTTTCAACCAGCCCATGGAAGATGTAGTC
TTTCCAAAGGGCCTGGAGCGACTTTCCCTTGGTGCGGATTTCAACCAGGA
TATTCAAAATGCATCGTTCCCTCCTGCACTAACGTTCTTGTCCCTGGGGG
CGTCTTTCAACCATCCTCTCGAGGGAGCTGAGCTGCCGAAGTCCCTACAA
AGGCTTGTGTGGGGACAGCTGTTCGACCAGCCGGTTGAAAGGGTTCGCTG
GCCGCCGGCGTTACAGAGCATCGCCTTCGGTGACGCGTTCAATCACCCCG
TCGAGCAGGCTGAGTTTCCGGCACGAGTGCAGTCCCTTCAGCTTGGAAAA
GCATTCGATCAGCAAGTTGAACGAGTGGCATGGCCTGAACGCCTAGAGAG
TCTCTCATTCGCACATGACTTCAACCACCCTGTGGCGGAGATGTCATGGC
CGGAGGGCGTGAAAGAGGTGCGCGTACTCTGGGAGTAGCGCGCGTTTTTA
GTTGGCAACTAGTCGATATCTCACACGAGTGCATTTGATACCGCAGAACA
CCAACCAGTATTTGCTGTGGTTCTTTTGGCGTGAAGGACGGTGGACCTTT
CTTTCATTGTGTTGGGAGTTGTAGTAGCTGCCGAAACAACGCAAAACGAC
CACTACGCAGTATCGCCGCACCTTTGGGAGCTTCGTGGATAGTTCGGTGG
GCTGCCCATGGAAAAAAAGCAAACCCTCATCAGTGTAGTCGACTGAAACA
AAGGTATTGTATCCATGCTGTCGTCATGAAGGCACGAAGACGTTCGTTCC
CCTGCACGGTTGCATGAACGTATTTCACGCTTACTTGAGGTCAAATCGAA
CATTGATCCCAAGTCGGTGTGCGGAAACTCAATCGTTCAGTTGATGAAAC
GGGCGTGCATCGACCAGAAACTACAATTTGCCCACCGCTGCTAGCCAACA
AGCAGCTGAGCGTGCAACACAGTTGGCGTGGATGCAGCGGCCCAGACAAA
TGATACCGGTATCCACGTAGCCACGAGTCCCGGCAGCAGCGGAGGCCATC
ACAAACCAGCAACCACTTTTCATTATCACTCAACCGTAACCCACGACAAA
GAACACGCCGCCAAACATGAGGTCCTCAGGAACGATTCACGAAGCCGTTG
TATGGTGGCGACCACTATCGACAATGCTCAGGTCTCCTTTGGGTACAACT
TTGACAAACCGCTGTCGGGAGTGAAGTGGCCGTCTTACCTTGAGAGCGTC
ATTTTCGGCTTCCGCTATAACAAGTCCCTCGACAACGTCACGTGGCCCGC
GCTCTGCCGCTCCATTCAGCTCGGCGAGTCCTTCAACCTTCCTCTGCACG
GCATAAGGTATGACGGCGGTCAAGCGGCTGTTACGTCAAGAAATGACAAC
GCAACTCTAACCCTAACCAGATGGTGTAAGCCAAGGGTATTGAAAATTAT
GGGGGCGGCTTAAATCACAACAGCTTGGAAGCGACCATCTTTGACGGCTC
CCTTCGACAAACCGGTTATTGCATTATTCGAGATATCAGCGAGCCCTCAC
AGTCGCCAGTACTTCGGCCAAAACACGCCACGGTGCCGCGGTTCAAACAG
CCAAGGGTCACATCTGGCCGTCAGACTCCCCCCGTTCTGCTTGCCTCTGA
CGGTGAAAGATGCGGAACGTGGTTGCTTCCAGATTGTCCCAACAACGAGA
GCCGTCGAGCTTACGGGGTCTCGACCACACGAATACAAAAGGAAGATCGT
CGTGGTCGAGACACAAGGCCCACCGTGTAGACGCCAAGGAGACGGCACAG
GCGCTCCCAATGCAAAACATGGCCGGTGTTTCTATCGAGATGCAGGTAGC
TAGATGCAGGAGAGGTTCTTCGTCGTGAGGGCGTTACATGGGCATCACTC
AAACTGTGAAGGTAGGAACGGAAACAAACAAAACATAAAAACATACCCAG
ACGGCTACAACTGTACCCCGTGTTTATCCTATTCTGGTCTTATTCCGAAA
GCAGTTGGCCGCAAGGGCTGCTCGAGTTGGACCTGGGGGACGACTTCAAC
CACCCCTTGGAAGGCGTTACTCTACCAGCGGGGCTGGAACGGCTCTACCT
CTCGGTACGCCTGCTTTCAGTGTAAACCACGTGTTTGTTGGCGACCGTGG
TCTAAGGGCGGGTCATTGCTGTTGTTGCTGTTGACACTGCTGCAGCTGTT
GCTTGAATTTTTCCGTTCTCGCGCACGTCATCTATACCTCGTCGGCGTCG
TGTGCCTACATACGTGTGGCGGTTAGGGTATGAATGGGAAAGCTCCGAGG
TCGCGTTTCTATCGCGAAAACACCGAAATTTTCCACGCTCTTGACAGTTA
TTTCCTTCTTCGATGAAGGTGTTCTTCAACCAGCCTGTGGTCGCGGTTGA
GTGGCCCGAAGGACTGCTCGAGCTGGATTTCGGGCTGAATTTCAACATGC
CGATCGAGGGCACGTCGTTTCCCTGGGGATTGCAGTCGGTGTGCTTCGGC
CGGTGCTTCAATCAGGATGTCACCCGCGTTTCGTGGCCGGGGGAATTGAC
AAGGGTAAAATGTGTTGTTGTTGTTGAGGTTGATGGATGTTGCTGTTGAT
GTTGTAGTTCTTGTTGTTCTTGTTGATTCTATTGCTGATCTCGATCGCAA
AGCCACCCTGACCAGCCACACACCTGTATGTGGTCTTTCCTCCGTGACCC
CGGTTTACATATCCACCAACCCTTTCAGCGCAGGCACGGAGTAGACTCCC
TTCCTACCTTCATTACCTCAAAACGCGTGAAAGTCTCTCCACGCATGGTC
TTTCCCCTATAGGTCGTCCAAATGATCTTGGGGACAGACATGTGCCTTAA
ATAGAAGAACAACCTACGAGCGTGCTGCCTGCACAATGTACCTCCCCTCC
CAATATCGAAAAATGCCACATCGGTGTAGATCGCCTTCGGACGAGCGTTC
GTCGGGGCCCTCGAGGGAGACTCCTGGCCACCCCCGAAGCTGGAAGTGTT
GGACCTGGGAAGCAAGTTCCACGCGAAGCATCGAATTGACGAGTCCAACC
TTCGGCAAGGGTGTCAGGTGTTCTACCTCTACGTTCCAGGCAGCGACTAC
TAGGTCGCTGTCTTTGTTGTTGTGGCTCCTCTTTTTGGTTGTGGTGGTTG
CTTTGTTGCTGGATATTGTTGTCCTCGGGCAGCGCGGACTTTCGCTTGTA
GGCAAACCAAGCACGTATCGCCGTAGCACATGGTAACCTTGTTTGAGCAG
AAGCACCACACATAGCATCAACCTCCTGAAACGAATTCCGAGGCCTCAAC
TTGTGCTGAAAGGGGGTACGGAGCACCAGGAGGTTTTCTTCAAGTGTGAA
ACGGCGACCTGCGGACAGGGAATGTCTACTCGAGGCCATCGATCTCTTAC
AGGCGGTTTGCACGGACGACTCGACGGACAAGGAAAAGTTCCTCGAGGTA
CAGTAGTTGGCGTACTCACAGCTGAAGCCGAAAGAGGCAGCAATGCAAGG
GAAAATTACAAAGTGCACTCTCTGGCACAGAGAGCTGAGATACGGGAGTT
ACACGAAGAAACGGGCAGAGCTAGTCGATGTTACCAGGAGCACTTGGCAA
CGATTGTAAGGACGCCGAAGCCACTTTTGAGTACTGGGCCGAGAGACACG
ACGCTTCAAAGTGCCCTGTGCTCTTTGTTTCACGAAAAAACTCGTTGACA
CAAAGTACCCCGAACACTTCTGGGTGGCATGTAGGGAATGGACCGCCCTT
TCAGATAAAAAAATTATGGGAACTGATATAGCCTACGCATCTGCGAATGT
ATGGCTTCTTTATGTTGTCGTGGGGGGCGGGGGTCGGACGGAACGCCAAC
TGCAGGAGGAGAACCGCCGACTGTAGGGTTATTCCAAGCTTTTCGGCTTG
TAGGTGTTGCAGCCGCAACGGGGCTCGGTATTTTACCTCGACCTGCTTCA
GGGGGTCAGTAGAATTCCTCTACCTGCTTCAGACGTTTCGTTGAATAGGA
TTGGCGCGGCCCTTGTGGTGGTAGGTACCGGCGGATTACCCAAGGGCTAA
GATATGAGCACCACTAAATGTGGATCTGTTGCGCGTGCCGAAGATTGGGA
ATGTCGGCGAGTGGGGCGGTCTTCCGACGGACGTGGTCTCTTGTACCGAT
TCGAGTGGTTACATGGTGGGGTGCGTGAGTGCCGAGTACGACATGATACT
GTTGGAGTTGGTAGGGGGCGATTGGTCCGCTGCTTCGGCAGAAGCATTCT
AAGAACAAGGGAGTGGACAGTCGGGGTATTTTGGGGTGTTTTCTGGGGCC
CACAGTACAAATGCCTTAAATTCCTGACTGCAGTCACCACGGCGATAAAG
ATCCCGCAAATGGCATAAATGAAATGACCCGAGTGTAACGCAGGACCATA
GTCACCTCGAGCAACGACCAGTGAATTGGTGTGGTGTGCAGTCCACAGGC
TCGCTCCAAATCCACGATTGTTATTTCAGCCTCTCAAAAGTTGCCCCATG
TACCCCCTGTTTAGTCGAGGTATTTCGCGAAAGTATGCATACATGGAGAT
CTTTCGCAACTACTTCGTATGTAGTGAGAAACGAATTCTGATATAGAACC
AGTGTCGTTGAATCTTCTCAGAACACGTACGTGTGTCTTGATTGGCAATA
GGAATATATCCG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig1777:9322..14683+ >mRNA_Ecto-sp13_S_contig1777.5384.1 ID=mRNA_Ecto-sp13_S_contig1777.5384.1|Name=mRNA_Ecto-sp13_S_contig1777.5384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1701bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1777:9322..14683+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGGCTCTTCACTCCACCTGGTGTCACAATCCGGTCAAGTCTCCGACGAA GGAGATTTTAGCGATGAAGCCATCATCTCCAAATCCACCATCGCCCACAA TAACGTCACTAGCGGCGCTTCAGCTAGCGTTCGCTTCTGGATACGAGGGC CATCACCAGCCGCAGTTGGTATGTCTCGACACCTGCAATGCCTGTCGTGA ATCGGTGGCCATCCGTTTACGTCTCACAGACCGCATGCCGCCGTCCCTCA GCGCCTTGTTCTTCGCCACTCCACACGTGACGATTGCAGGGCAGCAAAAT AACAAGTACATCGACGAAAATGGTAACGCCACCGCCACCACCACCAGGGG CGGAATTTTGTTTGTCACGCCCACCTCTTCGCCACAACTATCGATACAGA GTGGCGCGAGCACCTGGGATGAGAAACGGGGGAAATGTGTTCGGCTTGCG AGATACCAAAGGGTATTGCATGTTGTGTGGGCGGCTCTGGGCGTATCGAT TCAACACATTGTGTCATGGCCGGGTGGCGTACGCCGGCTCACGTTCTTGG AGGACTTCAACCAAGATCTACGGTGGGTGCTATGGCCAGAGGGACTGCGG GAGCTGACCTTTCGAGAGGGTTTCAACCAGCCCATGGAAGATGTAGTCTT TCCAAAGGGCCTGGAGCGACTTTCCCTTGGTGCGGATTTCAACCAGGATA TTCAAAATGCATCGTTCCCTCCTGCACTAACGTTCTTGTCCCTGGGGGCG TCTTTCAACCATCCTCTCGAGGGAGCTGAGCTGCCGAAGTCCCTACAAAG GCTTGTGTGGGGACAGCTGTTCGACCAGCCGGTTGAAAGGGTTCGCTGGC CGCCGGCGTTACAGAGCATCGCCTTCGGTGACGCGTTCAATCACCCCGTC GAGCAGGCTGAGTTTCCGGCACGAGTGCAGTCCCTTCAGCTTGGAAAAGC ATTCGATCAGCAAGTTGAACGAGTGGCATGGCCTGAACGCCTAGAGAGTC TCTCATTCGCACATGACTTCAACCACCCTGTGGCGGAGATGTCATGGCCG GAGGGCGTGAAAGAGGTCTCCTTTGGGTACAACTTTGACAAACCGCTGTC GGGAGTGAAGTGGCCGTCTTACCTTGAGAGCGTCATTTTCGGCTTCCGCT ATAACAAGTCCCTCGACAACGTCACGTGGCCCGCGCTCTGCCGCTCCATT CAGCTCGGCGAGTCCTTCAACCTTCCTCTGCACGGCATAAGTTGGCCGCA AGGGCTGCTCGAGTTGGACCTGGGGGACGACTTCAACCACCCCTTGGAAG GCGTTACTCTACCAGCGGGGCTGGAACGGCTCTACCTCTCGGTGTTCTTC AACCAGCCTGTGGTCGCGGTTGAGTGGCCCGAAGGACTGCTCGAGCTGGA TTTCGGGCTGAATTTCAACATGCCGATCGAGGGCACGTCGTTTCCCTGGG GATTGCAGTCGGTGTGCTTCGGCCGGTGCTTCAATCAGGATGTCACCCGC GTTTCGTGGCCGGGGGAATTGACAAGGATCGCCTTCGGACGAGCGTTCGT CGGGGCCCTCGAGGGAGACTCCTGGCCACCCCCGAAGCTGGAAGTGTTGG ACCTGGGAAGCAAGTTCCACGCGAAGCATCGAATTGACGAGTCCAACCTT CGGCAAGGGTGTCAGGTGTTCTACCTCTACGTTCCAGGCAGCGACTACTA G back to top
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