prot_Ecto-sp13_S_contig17769.5382.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17769.5382.1
Unique Nameprot_Ecto-sp13_S_contig17769.5382.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length150
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17769.5382.1 vs. uniprot
Match: D8LDS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS2_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 3.000e-29
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 0 
Query:   52 VDGCWRRGDGLFRLKRAVGDLDGRRLVLDTRGAGSVVGRHEERGKAGGRREGKGWGAWVGL 112
            VDGC RRGDG FRLKRAVGDLDGRRLVLDTRGAGSVVGRHEERGK G RREG+G GAWVGL
Sbjct:   57 VDGCGRRGDGFFRLKRAVGDLDGRRLVLDTRGAGSVVGRHEERGKVGRRREGRGRGAWVGL 117
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17769.5382.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDS2_ECTSI3.000e-2990.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 38..56
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..6
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 57..149
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 7..32
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..37
NoneNo IPR availableTMHMMTMhelixcoord: 39..56
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17769contigEcto-sp13_S_contig17769:265..942 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17769.5382.1mRNA_Ecto-sp13_S_contig17769.5382.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17769 213..942 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17769.5382.1 ID=prot_Ecto-sp13_S_contig17769.5382.1|Name=mRNA_Ecto-sp13_S_contig17769.5382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=150bp
MIVAVVIVVVGVVFVVMVLVVFVVMVLVVFVYHHSGRGRGHGVLVLVVVV
VVDGCWRRGDGLFRLKRAVGDLDGRRLVLDTRGAGSVVGRHEERGKAGGR
REGKGWGAWVGLHTPDVSPLLLIIFIFGACESGALPTKRRKSSCDLVTD*
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