mRNA_Ecto-sp13_S_contig17769.5382.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17769.5382.1
Unique NamemRNA_Ecto-sp13_S_contig17769.5382.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17769.5382.1 vs. uniprot
Match: D8LDS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS2_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 5.350e-29
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:  154 VDGCWRRGDGLFRLKRAVGDLDGRRLVLDTRGAGSVVGRHEERGKAGGRREGKGWGAWVGL 336
            VDGC RRGDG FRLKRAVGDLDGRRLVLDTRGAGSVVGRHEERGK G RREG+G GAWVGL
Sbjct:   57 VDGCGRRGDGFFRLKRAVGDLDGRRLVLDTRGAGSVVGRHEERGKVGRRREGRGRGAWVGL 117
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17769.5382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDS2_ECTSI5.350e-2990.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17769contigEcto-sp13_S_contig17769:213..942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size502
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_003130.1
Cds size450
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462920.9910593-UTR-Ecto-sp13_S_contig17769:212..2641681462920.9910593-UTR-Ecto-sp13_S_contig17769:212..264Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17769 213..264 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462921.0078168-CDS-Ecto-sp13_S_contig17769:264..3821681462921.0078168-CDS-Ecto-sp13_S_contig17769:264..382Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17769 265..382 -
1681462921.0201921-CDS-Ecto-sp13_S_contig17769:610..9421681462921.0201921-CDS-Ecto-sp13_S_contig17769:610..942Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17769 611..942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17769.5382.1prot_Ecto-sp13_S_contig17769.5382.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17769 265..942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17769.5382.1

>prot_Ecto-sp13_S_contig17769.5382.1 ID=prot_Ecto-sp13_S_contig17769.5382.1|Name=mRNA_Ecto-sp13_S_contig17769.5382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=150bp
MIVAVVIVVVGVVFVVMVLVVFVVMVLVVFVYHHSGRGRGHGVLVLVVVV
VVDGCWRRGDGLFRLKRAVGDLDGRRLVLDTRGAGSVVGRHEERGKAGGR
REGKGWGAWVGLHTPDVSPLLLIIFIFGACESGALPTKRRKSSCDLVTD*
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mRNA from alignment at Ecto-sp13_S_contig17769:213..942-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17769.5382.1 ID=mRNA_Ecto-sp13_S_contig17769.5382.1|Name=mRNA_Ecto-sp13_S_contig17769.5382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=730bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17769:213..942- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGTGGCCGTCGTGATCGTCGTGGTCGGAGTGGTCTTCGTCGTCAT
GGTCCTCGTGGTCTTCGTCGTCATGGTCCTCGTGGTCTTCGTCTACCACC
ATTCCGGTAGGGGTCGGGGACACGGAGTGCTCGTCCTCGTCGTCGTGGTC
GTCGTGGACGGCTGTTGGCGACGGGGTGACGGTCTCTTCCGCTTGAAGCG
AGCGGTGGGAGATCTCGACGGCCGCCGCCTTGTCCTCGACACCCGCGGCG
CCGGCTCTGTTGTAGGCAGGCACGAAGAGCGGGGGAAAGCGGGGGGGAGA
CGAGAAGGAAAAGGATGGGGCGCGTGGGTTGGGTGAGAGGAAGAACGCAC
GTCATGAAGCAATATGCGTTATGTTTTCTGAGTCCAAGGATTGACGCACT
TAAAAATGATGCCGTAACTATTGTGGGCCGGAATATTTGGGCTTGACGGG
AAGCGTTGTTCTCTTCATGTTGCGTATGTTCAGTAGGCAGCAGGTCATCC
TTGCCCGGACTGTTGATATATTTCACGATGTCTTCGCCTACTTGTTGCTT
GCTTGCACAGACTACATACTCCGGACGTTTCTCCGCTTCTCCTCATTATT
TTCATCTTTGGCGCATGTGAAAGTGGTGCTCTGCCGACAAAGCGCCGCAA
AAGCTCGTGCGACCTCGTCACGGACTAAACATCCTTCTCCTCGCATGCTC
CGAGACCGCAGTGAACCTGGGCATACAAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17769:213..942-

>mRNA_Ecto-sp13_S_contig17769.5382.1 ID=mRNA_Ecto-sp13_S_contig17769.5382.1|Name=mRNA_Ecto-sp13_S_contig17769.5382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17769:213..942- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGTGGCCGTCGTGATCGTCGTGGTCGGAGTGGTCTTCGTCGTCAT
GGTCCTCGTGGTCTTCGTCGTCATGGTCCTCGTGGTCTTCGTCTACCACC
ATTCCGGTAGGGGTCGGGGACACGGAGTGCTCGTCCTCGTCGTCGTGGTC
GTCGTGGACGGCTGTTGGCGACGGGGTGACGGTCTCTTCCGCTTGAAGCG
AGCGGTGGGAGATCTCGACGGCCGCCGCCTTGTCCTCGACACCCGCGGCG
CCGGCTCTGTTGTAGGCAGGCACGAAGAGCGGGGGAAAGCGGGGGGGAGA
CGAGAAGGAAAAGGATGGGGCGCGTGGGTTGGACTACATACTCCGGACGT
TTCTCCGCTTCTCCTCATTATTTTCATCTTTGGCGCATGTGAAAGTGGTG
CTCTGCCGACAAAGCGCCGCAAAAGCTCGTGCGACCTCGTCACGGACTAA
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