mRNA_Ecto-sp13_S_contig17747.5378.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17747.5378.1
Unique NamemRNA_Ecto-sp13_S_contig17747.5378.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17747.5378.1 vs. uniprot
Match: D7G2F7_ECTSI (DNA polymerase lambda n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F7_ECTSI)

HSP 1 Score: 398 bits (1023), Expect = 2.430e-132
Identity = 190/198 (95.96%), Postives = 195/198 (98.48%), Query Frame = 3 
Query:    3 HEDIKQRMPRSEAAEIEAAVTKVARSICPGVICQACGSYRRGKNNCGDVDVLIRPPEGQEDSPMFLELIKELTETGFITDRLAMPEGPYTPGKPQTFMGVCKLPGESRLHRRLDIKLYPTSMFAFAVLYFTGSGDFNMNMRCFAKRKGLKLNDKGLFKVDPFSGEEVPNSGYSCLREEDVFSALGMDWIEPKDRKGGG 596
            HEDIKQRMPRSEAAEIEAAVTKVA+SICPGVICQACGSYRRGK+NCGDVDVLIRPPEGQEDSPMFLELIKELTETGFITDRLAMPEGPYTPGKPQTFMGVCKLPGE ++HRRLD+KLYPTSMFAFAVLYFTGSGDFNMNMRCFAK KGLKLNDKGLFKVDPFSGEEVPNSGYSCLREEDVFSALGMDWIEPKDRKG G
Sbjct:  436 HEDIKQRMPRSEAAEIEAAVTKVAQSICPGVICQACGSYRRGKSNCGDVDVLIRPPEGQEDSPMFLELIKELTETGFITDRLAMPEGPYTPGKPQTFMGVCKLPGEGQIHRRLDVKLYPTSMFAFAVLYFTGSGDFNMNMRCFAKSKGLKLNDKGLFKVDPFSGEEVPNSGYSCLREEDVFSALGMDWIEPKDRKGVG 633
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BLAST of mRNA_Ecto-sp13_S_contig17747.5378.1 vs. uniprot
Match: A0A6H5JQ91_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ91_9PHAE)

HSP 1 Score: 367 bits (943), Expect = 1.050e-120
Identity = 181/210 (86.19%), Postives = 185/210 (88.10%), Query Frame = 3 
Query:    3 HEDIKQRMPRSEAAEIEAAVTKVARSICPGVICQA------------CGSYRRGKNNCGDVDVLIRPPEGQEDSPMFLELIKELTETGFITDRLAMPEGPYTPGKPQTFMGVCKLPGESRLHRRLDIKLYPTSMFAFAVLYFTGSGDFNMNMRCFAKRKGLKLNDKGLFKVDPFSGEEVPNSGYSCLREEDVFSALGMDWIEPKDRKGGG 596
            HEDIK RMPRSEAAEIEAAVTKVA+SICPGVICQA            CGSYRR K NCGDVDVLIRPPEGQEDS MFLEL+KELTET  ITDRLA+PEGPYTPGKPQTFMGVCKLPGE RLHRRLDIKLYP SMFAFAVLYF GSGDFNMNMRCF K KGLKLNDKGLFKVDPFSGEEVPNSGYSC REEDVF+ALGMDWIEPKDRKG G
Sbjct:  396 HEDIKPRMPRSEAAEIEAAVTKVAQSICPGVICQASFLTSPRRRTEACGSYRRVKRNCGDVDVLIRPPEGQEDSSMFLELVKELTETRLITDRLAVPEGPYTPGKPQTFMGVCKLPGEGRLHRRLDIKLYPASMFAFAVLYFAGSGDFNMNMRCFGKSKGLKLNDKGLFKVDPFSGEEVPNSGYSCFREEDVFTALGMDWIEPKDRKGVG 605
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BLAST of mRNA_Ecto-sp13_S_contig17747.5378.1 vs. uniprot
Match: D7G2F8_ECTSI (DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F8_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 6.740e-102
Identity = 150/197 (76.14%), Postives = 169/197 (85.79%), Query Frame = 3 
Query:    3 HEDIKQRMPRSEAAEIEAAVTKVARSICPGVICQACGSYRRGKNNCGDVDVLIRPPEGQEDSPMFLELIKELTETGFITDRLAMPEGPYTPGKPQTFMGVCKLPGESRLHRRLDIKLYPTSMFAFAVLYFTGSGDFNMNMRCFAKRKGLKLNDKGLFKVDPFSGEEVPN-SGYSCLREEDVFSALGMDWIEPKDRKG 590
            HEDI QRMPRSEAAEIEA VTKVA+SICPGVICQACGSYRRGK++CGDVDVLIRPPEGQEDSPMF +LIK L ETGFITD+L +  GP+ PGK Q+FMG+CKLPG  RLHRR+DIK YPTS+FAFAVLYFTGS  FN +MR FAK KGLKL+DKGL +V+  +GEEV     YSCLREEDVF+ALG++W EPKDR G
Sbjct:  177 HEDIMQRMPRSEAAEIEAVVTKVAQSICPGVICQACGSYRRGKSHCGDVDVLIRPPEGQEDSPMFDDLIKRLVETGFITDKLTLAGGPHRPGKSQSFMGICKLPGTGRLHRRVDIKFYPTSLFAFAVLYFTGSSHFNRSMRSFAKIKGLKLSDKGLCRVNTVNGEEVHRFPSYSCLREEDVFTALGLEWREPKDRDG 373
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BLAST of mRNA_Ecto-sp13_S_contig17747.5378.1 vs. uniprot
Match: A0A6H5JHQ3_9PHAE (DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ3_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 5.010e-90
Identity = 143/197 (72.59%), Postives = 165/197 (83.76%), Query Frame = 3 
Query:    3 HEDIKQRMPRSEAAEIEAAVTKVARSICPGVICQACGSYRRGKNNCGDVDVLIRPPEGQEDSPMFLELIKELTETGFITDRLAMPEGPYTPGKPQTFMGVCKLPGESRLHRRLDIKLYPTSMFAFAVLYFTGSGDFNMNMRCFAKRKGLKLNDKGLFKVDPFSGEEVPN-SGYSCLREEDVFSALGMDWIEPKDRKG 590
            HEDI QRMPRSEAAEIEA VT+VA+SICPG    ACGSYRRGK++CGDVDVLIRPPEGQEDSP+F +LIK L ETGFITD+L +   P+ PGK Q+FMG+CKLPG+ RLHRR+DIK YPTS+FAFAVLYFTGS  FN +MR FAK KGLKL+DKGL +V+  +GEEV     YSCLREEDVF+ALG++W EPKDR G
Sbjct:  653 HEDITQRMPRSEAAEIEAVVTRVAQSICPG----ACGSYRRGKSHCGDVDVLIRPPEGQEDSPVFDDLIKRLVETGFITDKLTLAGSPHKPGKSQSFMGICKLPGKGRLHRRVDIKFYPTSLFAFAVLYFTGSSHFNRSMRSFAKIKGLKLSDKGLCRVNTVNGEEVHRFPSYSCLREEDVFTALGLEWREPKDRDG 845
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BLAST of mRNA_Ecto-sp13_S_contig17747.5378.1 vs. uniprot
Match: A0A7S2HHH8_9STRA (DNA polymerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HHH8_9STRA)

HSP 1 Score: 175 bits (444), Expect = 3.520e-51
Identity = 102/218 (46.79%), Postives = 129/218 (59.17%), Query Frame = 3 
Query:    9 DIKQRMPRSEAAEIEAAVTKVARSICPGVICQACGSYRRGKNNCGDVDVLIRPPE---GQEDSP-------MFLELIKELTETGFITDRLAMPEGPYTPGK----------------PQTFMGVCKLPGESRLHRRLDIKLYPTSMFAFAVLYFTGSGDFNMNMRCFAKRKGLKLNDKGLFKVDPFSGEEVPNSGYSCLREEDVFSALGMDWIEPKDR 584
            ++K+RMPRSEA  I A VTK ARS+ PG     CGSYRRGK + GDVDVL+ PP    GQ+          +   L+++L  + F+TD L +P   YTP K                PQT+MGVCKL G   LHRRLDIK+YP  M AFA +YFTGS  FN +MRC A+R+G  L+DKGL K   F    V     +C  E+++F  +GMDW EP +R
Sbjct:   78 ELKERMPRSEATAIGAMVTKEARSLVPGCFAMVCGSYRRGKQSSGDVDVLLGPPPSATGQDSEADEAAMQSLLPNLLQQLHTSNFLTDDLTLP---YTPFKSSGRYPSDGNSAEGSLPQTYMGVCKL-GADHLHRRLDIKVYPREMIAFAQMYFTGSDYFNRSMRCLARRQGWSLSDKGLKKR--FGAGSV-----TCHSEKEIFEVMGMDWKEPHER 284
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BLAST of mRNA_Ecto-sp13_S_contig17747.5378.1 vs. uniprot
Match: A0A8D2LGY6_VARKO (DNA polymerase n=5 Tax=Varanus komodoensis TaxID=61221 RepID=A0A8D2LGY6_VARKO)

HSP 1 Score: 169 bits (429), Expect = 5.080e-49
Identity = 90/197 (45.69%), Postives = 123/197 (62.44%), Query Frame = 3 
Query:    3 HEDIKQRMPRSEAAEIEAAVTKVARSICPGVICQACGSYRRGKNNCGDVDVLIRPPEGQEDSPMFLELIKELTETGFITDRLAMPEGPYTPGKPQTFMGVCKLPGESRLHRRLDIKLYPTSMFAFAVLYFTGSGDFNMNMRCFAKRKGLKLNDKGLFKV---DPFSGEEVPNSGYSCLREEDVFSALGMDWIEPKDR 584
            +ED  +RMPR EAAEIE  V + A+S+ PG++C ACGS+RRGK+ CGDVDVL+  P+G     +F +L+  L ++GF+TD L   E     G+ + ++GVC+LPG  R HRRLDI + P   FA A+LYFTGS  FN +MR  AK KG+ L++  L       P   + VP        E+DVF  LG+ + EP +R
Sbjct:   83 YEDFLERMPREEAAEIEQVVREAAQSMNPGLVCVACGSFRRGKSTCGDVDVLVTHPDGHSHQGVFKKLLDSLWKSGFLTDDLVSQEDN---GRQKKYLGVCRLPGPGRRHRRLDIIVVPYDEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTGVVRRPGGLKAVPGLPLLTRTEKDVFMHLGLPYREPHER 276
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BLAST of mRNA_Ecto-sp13_S_contig17747.5378.1 vs. uniprot
Match: A0A8C0G3I4_CHEAB (DNA polymerase n=1 Tax=Chelonoidis abingdonii TaxID=106734 RepID=A0A8C0G3I4_CHEAB)

HSP 1 Score: 170 bits (430), Expect = 5.130e-49
Identity = 93/197 (47.21%), Postives = 124/197 (62.94%), Query Frame = 3 
Query:    3 HEDIKQRMPRSEAAEIEAAVTKVARSICPGVICQACGSYRRGKNNCGDVDVLIRPPEGQEDSPMFLELIKELTETGFITDRLAMPEGPYTPGKPQTFMGVCKLPGESRLHRRLDIKLYPTSMFAFAVLYFTGSGDFNMNMRCFAKRKGLKLNDKGLFK--VDPFSGEEV-PNSGYSCLREEDVFSALGMDWIEPKDR 584
            +ED  +RMPR EAAEIE  V+K A S+ PG++C ACGSYRRGK  CGDVDVL+  P+GQ    +F +L+  L  +GF+TD L + E     G  + ++GVC+LPG  R HRRLDI + P + FA A+LYFTGS  FN +MR  AK +G+ L++  L    V    G +V P        E DVF+ LG+ + EP +R
Sbjct:   96 YEDFLERMPREEAAEIEQTVSKAAWSLNPGLVCVACGSYRRGKATCGDVDVLVTHPDGQSHRGIFGKLLDSLRRSGFLTDDLVIQEDS---GNQKKYLGVCRLPGPGRRHRRLDIIVAPHAEFACALLYFTGSAYFNCSMRALAKTRGMSLSEHALHTAVVRAPGGRKVGPGLVLPTPTERDVFTLLGLAYREPTER 289
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BLAST of mRNA_Ecto-sp13_S_contig17747.5378.1 vs. uniprot
Match: UPI0016035DFB (DNA polymerase lambda-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016035DFB)

HSP 1 Score: 176 bits (446), Expect = 1.300e-48
Identity = 97/203 (47.78%), Postives = 128/203 (63.05%), Query Frame = 3 
Query:    3 HEDIKQRMPRSEAAEIEAAVTKVARSICPGVICQACGSYRRGKNNCGDVDVLIRPPEGQEDSPMFLELIKELTETGFITDRLAMPEGPYTPGKPQTFMGVCKLPGESRLHRRLDIKLYPTSMFAFAVLYFTGSGDFNMNMRCFAKRKGLKLND---------KGLFKVDPFSGEEVPNSGYSCLREEDVFSALGMDWIEPKDR 584
            ++D   RMPR EAAEIE  V ++A SI PG++  ACGSYRRGK NCGDVDVLI  P+G+    +F +++  L ETGF+TD L   E     G+ + ++GVC+LPGE R HRRLDI + P S FA A++YFTGS  FN +MR  A +KG+ L++         KG  K+  F G  +P     C  EEDVF  LG+D+  P +R
Sbjct:  409 YDDFLDRMPREEAAEIERTVREMAESINPGLMAMACGSYRRGKLNCGDVDVLITHPDGKSHKGIFQKVLNGLKETGFLTDDLVTQEDN---GEQKKYLGVCRLPGEGRKHRRLDIIVIPYSEFACALMYFTGSAHFNRSMRALAIKKGMSLSEHSLNTGVIRKGKEKI--FGGTPLP-----CQTEEDVFRHLGLDYRPPHER 601
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BLAST of mRNA_Ecto-sp13_S_contig17747.5378.1 vs. uniprot
Match: A0A6P4YBK9_BRABE (DNA polymerase lambda n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YBK9_BRABE)

HSP 1 Score: 176 bits (445), Expect = 1.740e-48
Identity = 96/203 (47.29%), Postives = 127/203 (62.56%), Query Frame = 3 
Query:    3 HEDIKQRMPRSEAAEIEAAVTKVARSICPGVICQACGSYRRGKNNCGDVDVLIRPPEGQEDSPMFLELIKELTETGFITDRLAMPEGPYTPGKPQTFMGVCKLPGESRLHRRLDIKLYPTSMFAFAVLYFTGSGDFNMNMRCFAKRKGLKLND---------KGLFKVDPFSGEEVPNSGYSCLREEDVFSALGMDWIEPKDR 584
            ++D   RMPR EAAEIE  V ++A SI PG++  ACGSYRRGK NCGDVDVLI  P+G+    +F +++  L ETGF+TD L   E     G+ + ++GVC+LPGE R HRRLDI + P   FA A++YFTGS  FN +MR  A +KG+ L++         KG  K+  F G  +P     C  EEDVF  LG+D+  P +R
Sbjct:  406 YDDFLDRMPRDEAAEIEKTVREMAESINPGLMAMACGSYRRGKTNCGDVDVLITHPDGKSHKGIFQKVLSGLRETGFLTDDLVTQEDN---GEQKKYLGVCRLPGEGRKHRRLDIIVVPYGEFACALMYFTGSAHFNRSMRALAIKKGMSLSEHSLNTGVIRKGKEKI--FGGTPLP-----CHTEEDVFKHLGLDYRPPHER 598
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BLAST of mRNA_Ecto-sp13_S_contig17747.5378.1 vs. uniprot
Match: A0A2K6FMH0_PROCO (DNA polymerase n=2 Tax=Lemuriformes TaxID=376915 RepID=A0A2K6FMH0_PROCO)

HSP 1 Score: 167 bits (423), Expect = 1.750e-48
Identity = 93/202 (46.04%), Postives = 122/202 (60.40%), Query Frame = 3 
Query:    3 HEDIKQRMPRSEAAEIEAAVTKVARSICPGVICQACGSYRRGKNNCGDVDVLIRPPEGQEDSPMFLELIKELTETGFITDRLAMPEGPYTPGKPQTFMGVCKLPGESRLHRRLDIKLYPTSMFAFAVLYFTGSGDFNMNMRCFAKRKGLKLNDKGLFK--------VDPFSGEEVPNSGYSCLREEDVFSALGMDWIEPKDR 584
            ++D  +RMPR EAAEIE  V + AR+  PG++C ACGSYRRGK  CGDVDVLI  P+G+    +F  L+  L + GF+TD L   E     G+ Q ++GVC+LPG  R HRRLDI + P S FA A+LYFTGS  FN +MR  AK KG+ L++  L          V    G+ +P        E+DVF  LG+ + EP +R
Sbjct:   53 YDDFLERMPREEAAEIEQTVREAARAFNPGLLCVACGSYRRGKMTCGDVDVLITHPDGRSHQGIFSRLLDSLRQQGFLTDDLVSHE---ENGQQQKYLGVCQLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTGVVRNTQGVKVGLGQVLPTP-----TEKDVFRLLGLPYREPAER 246
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17747.5378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2F7_ECTSI2.430e-13295.96DNA polymerase lambda n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JQ91_9PHAE1.050e-12086.19DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP ... [more]
D7G2F8_ECTSI6.740e-10276.14DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5JHQ3_9PHAE5.010e-9072.59DNA polymerase lambda n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A7S2HHH8_9STRA3.520e-5146.79DNA polymerase n=1 Tax=Dictyocha speculum TaxID=35... [more]
A0A8D2LGY6_VARKO5.080e-4945.69DNA polymerase n=5 Tax=Varanus komodoensis TaxID=6... [more]
A0A8C0G3I4_CHEAB5.130e-4947.21DNA polymerase n=1 Tax=Chelonoidis abingdonii TaxI... [more]
UPI0016035DFB1.300e-4847.78DNA polymerase lambda-like n=1 Tax=Branchiostoma f... [more]
A0A6P4YBK9_BRABE1.740e-4847.29DNA polymerase lambda n=1 Tax=Branchiostoma belche... [more]
A0A2K6FMH0_PROCO1.750e-4846.04DNA polymerase n=2 Tax=Lemuriformes TaxID=376915 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17747contigEcto-sp13_S_contig17747:2..3139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score383.6
Seed ortholog evalue5.2e-104
Seed eggNOG ortholog2880.D7G2F7
Preferred namePOLB
Model size597
KEGG rclassRC00536
KEGG koko:K01834,ko:K02330,ko:K03512,ko:K10981
KEGG ReactionR01518
KEGG Pathwayko00010,ko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03410,ko03450,ko04922,ko05166,ko05203,ko05230,map00010,map00260,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map03410,map03450,map04922,map05166,map05203,map05230
KEGG ModuleM00001,M00002,M00003,M00296
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000724,GO:0000725,GO:0000726,GO:0000793,GO:0000794,GO:0000795,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002562,GO:0002566,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003887,GO:0003906,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006281,GO:0006284,GO:0006285,GO:0006286,GO:0006287,GO:0006288,GO:0006289,GO:0006290,GO:0006302,GO:0006303,GO:0006310,GO:0006464,GO:0006508,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007275,GO:0007431,GO:0007435,GO:0007568,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009636,GO:0009653,GO:0009887,GO:0009987,GO:0010033,GO:0010212,GO:0010224,GO:0010332,GO:0012501,GO:0015630,GO:0015631,GO:0016311,GO:0016444,GO:0016445,GO:0016446,GO:0016447,GO:0016579,GO:0016740,GO:0016772,GO:0016779,GO:0016829,GO:0016835,GO:0018130,GO:0019438,GO:0019538,GO:0019899,GO:0022612,GO:0023052,GO:0030145,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033151,GO:0033152,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035272,GO:0035556,GO:0036211,GO:0036296,GO:0042221,GO:0042493,GO:0042592,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0045471,GO:0046483,GO:0046677,GO:0046872,GO:0046914,GO:0048513,GO:0048534,GO:0048535,GO:0048536,GO:0048731,GO:0048732,GO:0048856,GO:0048872,GO:0050789,GO:0050794,GO:0050896,GO:0051103,GO:0051402,GO:0051575,GO:0051716,GO:0055093,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070646,GO:0070647,GO:0070997,GO:0071704,GO:0071707,GO:0071897,GO:0090304,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097510,GO:0098501,GO:0098502,GO:0099080,GO:0099081,GO:0099086,GO:0099512,GO:0099513,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901700
Exons5
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGsCOG1796@1,KOG2534@2759
EC2.7.7.7,5.4.2.11
Cds size573
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17747.5378.1prot_Ecto-sp13_S_contig17747.5378.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17747 25..3139 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462920.466152-UTR-Ecto-sp13_S_contig17747:1..241681462920.466152-UTR-Ecto-sp13_S_contig17747:1..24Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17747 2..24 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462920.4795024-CDS-Ecto-sp13_S_contig17747:24..1051681462920.4795024-CDS-Ecto-sp13_S_contig17747:24..105Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17747 25..105 +
1681462920.4901779-CDS-Ecto-sp13_S_contig17747:704..7821681462920.4901779-CDS-Ecto-sp13_S_contig17747:704..782Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17747 705..782 +
1681462920.5040238-CDS-Ecto-sp13_S_contig17747:1481..16601681462920.5040238-CDS-Ecto-sp13_S_contig17747:1481..1660Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17747 1482..1660 +
1681462920.513724-CDS-Ecto-sp13_S_contig17747:2148..23071681462920.513724-CDS-Ecto-sp13_S_contig17747:2148..2307Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17747 2149..2307 +
1681462920.523338-CDS-Ecto-sp13_S_contig17747:3063..31391681462920.523338-CDS-Ecto-sp13_S_contig17747:3063..3139Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17747 3064..3139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17747.5378.1

>prot_Ecto-sp13_S_contig17747.5378.1 ID=prot_Ecto-sp13_S_contig17747.5378.1|Name=mRNA_Ecto-sp13_S_contig17747.5378.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=191bp
MPRSEAAEIEAAVTKVARSICPGVICQACGSYRRGKNNCGDVDVLIRPPE
GQEDSPMFLELIKELTETGFITDRLAMPEGPYTPGKPQTFMGVCKLPGES
RLHRRLDIKLYPTSMFAFAVLYFTGSGDFNMNMRCFAKRKGLKLNDKGLF
KVDPFSGEEVPNSGYSCLREEDVFSALGMDWIEPKDRKGGG
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mRNA from alignment at Ecto-sp13_S_contig17747:2..3139+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17747.5378.1 ID=mRNA_Ecto-sp13_S_contig17747.5378.1|Name=mRNA_Ecto-sp13_S_contig17747.5378.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17747:2..3139+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCACGAGGACATCAAGCAGCGCATGCCGCGGTCCGAGGCCGCTGAGATC
GAAGCGGCGGTAACGAAGGTTGCCCGGAGCATCTGCCCGGGAGTCATCTG
CCAGGCAAGTTTGTTTACCTCACGTCGCAGACGGACGGAGGTTTCGATTT
CGAGAAAGAAGGAAGGCAAATCAATCAAGACCTCTTCTTACACACGTCTA
GACCTCGCTCTGTCTGGTGTGGTTCACCTTTGCAAAGGTCCTGGAACTGC
TCTGCGTGGTGGTTTTTCCGTGCCTTCTACAGTATAGTGTTTGAAATTCT
CTCCGGGATCACAAGTTGTAGCGGATGGAGTATGGTTCCCATCTCACCTT
TTTTTTTCTTGTGTGTGGGACGAAGATCAAGAAATATCGGCGAGCTGCTT
CTCCAATGTGTGAATGACCCAAATACCATCTTCAAGCGTACCTGGCACCC
ACGATCCTCGTTTGTGCATACGGTGACATAGTCCCTCTGTAGCCGTGATT
GCCCTAAATTATGTGGGCAACAGGCTCGCCAGAGACATCTTCAAGTTAAT
CTTGTGTGATGTGGGTTTGTGGGAGGGGTGGATAGTGTGGTCGCGTCGCG
CAATTTTTTACTTTACAAGTTGGTCTTTGTTCGTGTTTGGTGCGTGTTTT
CCCGCACGTTTTTTTTCCCTCGGCGCTCCTCTTTGCCGCTTGCCACCGCG
CAGGCCTGCGGGAGCTACAGGAGAGGCAAGAACAACTGCGGTGACGTGGA
CGTGCTCATTCGACCTCCCGAGGGACAAGAGGTGCGAATCAAGAAGATCT
GCAGACGGAGTTCCCTTTTTAGAAAATAAACATACAAACACAGAAGGATT
TCCGTTCGAGAAAGTGCCACAACCGATGGGAAGGTTAAAGTCTTTGCAGT
GAGGGGTAGAATAGGAAATGCCGCTGGGTTTCCGGAGGCAGGTCGTTGGG
TAACAAAGTACGGTTTGGAAGGCGTCCGTTGCATCAATCAGTGGTACGTG
TGCAGGTTGTGGCTCACCGTGTTCATTCAAAGAAGGTTTCTCCTTACCTA
TCGAGGGGCCCGCCTAATCTTACGACTCAGAATGGCAGATTGACCGGAGG
AAATCCACCGCTCTTTTCTGGCCCTCCCTTCCCCTGACGGGGGTTGAGCA
ACAGACATTCGCAACTTTGCAGGGGTCGGGTGGGGGGGCTCTCGGAGTGA
GTGCAGCCTCACCGCACGGGCGGTTCATTTTTCTCGCCCTTCCCTTTCGC
TCTCCGGCCTGCCTATCCTGTTGTTCTCTTCCCCTCCCCCCGTTCACGTG
TACACGCCTTGGTTATGTGAGAGATTGGTCCGGTGAGAACCCGGCGTGCT
CCGTCCCGGCTTTCTAGAGATGTGAGGTCAATGGTCTAACGCCTACACAT
ATAGGGCATGCGCGGTTATGAGTACACCCCCCCTCCTCCACGTGAGACCA
CAACAAAACGCGTTTCTCCCCGCCACCCAGGACTCTCCAATGTTCCTCGA
GCTGATCAAGGAGCTGACGGAGACCGGGTTCATCACGGACAGACTTGCCA
TGCCAGAGGGACCCTACACGCCCGGGAAGCCGCAGACCTTCATGGGCGTC
TGCAAGCTACCCGGCGAGAGCCGGCTCCACCGCCGGCTGGACATCAAGCT
CTACCCCACGTGGGTGTTGAGGGGTGTGGTTGGTGGTGGTTTTGCGACGA
TATTGGATGTTCTGGCCGCGCCTTTTGATGTGATCGTGACTGTGGTGAAG
GTGGCGCCGTTTTCTATATCCATTACGAGACTATGAAGCACAAACCTCCC
CCCCTCACGCCCTTGTGGGAGAGAGACGTACTGCTGTAGAGGAGTTCATG
AAAAAATGATGAATGCGGTAGGAGCCACCTAATGTCACTCAAGCACCAAG
GTCTAGAGCAGGGAGGATAAGCCACTCGGTCTAGCAATCCGTGTCCAATT
TTTGAGATGGATGAGAAATTCTGGTTGAACATAGCGCCTGTAATGTGCTT
GCTGACGATGTTTGGAATAGCTATTTTTCTTCTTCTAAGAGAGATGCCGA
ACAACCACGTGCTCATCCGTATGAAGAGCAGCTACAACTAATGAAAACCC
CCTTGCGTTCTGTTTAACTTTTGCGTTCACCTTCTCTCCCGCGGCAGTTC
AATGTTCGCGTTCGCCGTCCTGTACTTCACTGGGTCGGGCGACTTCAACA
TGAACATGCGCTGCTTCGCCAAGAGGAAGGGGCTCAAGCTGAATGACAAG
GGGCTATTCAAGGTCGACCCGTTCAGCGGCGAGGAAGTGCCCAACTCGGG
CTACAGGTTCGACCTAAATGTCTGCCACAGCAACAGCCGCAGCTGTCTCC
CAGCGTAGCAGCAGGAGTAATGGCGGTACACGATCCGGCAGCACCTCGTT
CTATCGGCCCTCAGAGATGGAGTGACCACAATCGATGTCTCGCAAGGGTG
CACTTCTGCCAAGGTTAAAGAAGACGTCGTGTGTAGCCAGCGCTTGCACT
TGCGTGTCACTGCTGTGTCCTGTTTCCGTTGTGTCAACCACGACCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCTCCCAGGGGGGGGAGAAAGCCGGGCC
AACATAAAAAACAAATTTTGTTTTGTGGCCACCCACACTTATAGTGTATA
NNNNNNNNNNGGCTGGGGGTCGCCCTTCTGTGCCTTTTCCGCTGGTTCTA
CACCCCCCCCCCCCCCCCCCCCCCCAAATTCTCTTACTGCAGGTGGAGAG
CAAGGCGAGATGAATAAATAGTCAAATTGTTGGTTGATGCCACCCAAGTT
TAGATGAGTGAACGACACTTACCCCTCCTCACAGCCGCCGCTACTGTTAA
GGAGGTAACTTCCACAGAGAGGCAGAAGTCATTGGTTATTTCACCACCGA
AGATGTTGCTACACAATATCAACACCCACCAAAAAGGAATCAACCCCCTC
CTTAAGTCGCCTCCCGCGGGCAAGCCAACCATGCAGAAAGGGTAACTGCT
CAACCCACCCGGGTCCTCCTCCACTTGTTCCCCTTCCTTGTCAAACGTCA
TTCTCCATCCAGCTGCCTTCGAGAGGAAGACGTGTTCAGCGCCCTTGGAA
TGGATTGGATAGAGCCGAAGGACAGGAAGGGAGGGGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17747:2..3139+

>mRNA_Ecto-sp13_S_contig17747.5378.1 ID=mRNA_Ecto-sp13_S_contig17747.5378.1|Name=mRNA_Ecto-sp13_S_contig17747.5378.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=573bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17747:2..3139+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCGGTCCGAGGCCGCTGAGATCGAAGCGGCGGTAACGAAGGTTGC
CCGGAGCATCTGCCCGGGAGTCATCTGCCAGGCCTGCGGGAGCTACAGGA
GAGGCAAGAACAACTGCGGTGACGTGGACGTGCTCATTCGACCTCCCGAG
GGACAAGAGGACTCTCCAATGTTCCTCGAGCTGATCAAGGAGCTGACGGA
GACCGGGTTCATCACGGACAGACTTGCCATGCCAGAGGGACCCTACACGC
CCGGGAAGCCGCAGACCTTCATGGGCGTCTGCAAGCTACCCGGCGAGAGC
CGGCTCCACCGCCGGCTGGACATCAAGCTCTACCCCACTTCAATGTTCGC
GTTCGCCGTCCTGTACTTCACTGGGTCGGGCGACTTCAACATGAACATGC
GCTGCTTCGCCAAGAGGAAGGGGCTCAAGCTGAATGACAAGGGGCTATTC
AAGGTCGACCCGTTCAGCGGCGAGGAAGTGCCCAACTCGGGCTACAGCTG
CCTTCGAGAGGAAGACGTGTTCAGCGCCCTTGGAATGGATTGGATAGAGC
CGAAGGACAGGAAGGGAGGGGGA
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