mRNA_Ecto-sp13_S_contig17740.5377.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17740.5377.1
Unique NamemRNA_Ecto-sp13_S_contig17740.5377.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17740.5377.1 vs. uniprot
Match: D7FYK4_ECTSI (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYK4_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 1.870e-82
Identity = 144/150 (96.00%), Postives = 147/150 (98.00%), Query Frame = 1 
Query:    1 IRGKKFLTSRSTIMQAGNCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAIEELRELCEKQLEALEEAKRKEKAKSFACRVTIVEGASDGAAGQGXXXXXXX-TARERYGTGYFTLDEDF 447
            + GKKFLTSRSTIMQAGNCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAIEELRELCE+QLEALEEAKRKEKAKSFACRVTIVEGA+DG AGQGXXXXXXX TARERYGTGYFTLDEDF
Sbjct:   37 VGGKKFLTSRSTIMQAGNCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAIEELRELCERQLEALEEAKRKEKAKSFACRVTIVEGAADGTAGQGXXXXXXXXTARERYGTGYFTLDEDF 186
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17740.5377.1 vs. uniprot
Match: A0A836CP50_9STRA (BTB/POZ protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP50_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.040e-38
Identity = 87/163 (53.37%), Postives = 104/163 (63.80%), Query Frame = 1 
Query:    1 IRGKKFLTSRSTIMQAGNCMLASMFRGKFNMET-DEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAIEELRELCEKQLEALEEAKRKE--KAKSFACRVTIVEG-----------ASDGAAGQGXXXXXXXTARERYGTGYFTLDEDF 447
            + G++F TS  TI   GN MLA+MF      +T D +GF FIDRDG+RF HVLNFLRC SLPSFDEAWRYE IMEEADF+A+EEL++LC  ++E   +AK KE  +AKS +CRVTIVE            A  G    G         RE +GT  FTLDEDF
Sbjct:   12 VGGRRFCTSIETIQGHGNSMLAAMFSNPLYKKTEDAQGFVFIDRDGDRFPHVLNFLRCGSLPSFDEAWRYEAIMEEADFFAVEELKQLCAARVEESAQAKEKEEERAKSMSCRVTIVEAPKPLAAPLAVAALTGELDPGPQWGTGVPPREAFGTFEFTLDEDF 174
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17740.5377.1 vs. uniprot
Match: A0A7S2H0D8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0D8_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.070e-22
Identity = 56/119 (47.06%), Postives = 83/119 (69.75%), Query Frame = 1 
Query:    1 IRGKKFLTSRSTIMQAGNCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAIEELRELCE---KQLEALEEAKRKEKAKSFA--CRVTIV 342
            + G K+ TSR T+MQ  + MLA MF G + +  DE G+AFIDRDG RFRH+LN+LR  ++P+F++ WR++E++EEADF+ + +LR+L E    Q++A    +R E AKS    C+V I+
Sbjct:   34 VGGVKYHTSRGTLMQCPSSMLARMFSGTWTVHEDE-GYAFIDRDGTRFRHILNYLRNRTVPAFEDEWRFQEVLEEADFFGLPDLRDLVEAKISQMKAQRAEERAEDAKSSGQVCQVMIL 151
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17740.5377.1 vs. uniprot
Match: M2Y739_GALSU (Potassium channel tetramerisation domain-like protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y739_GALSU)

HSP 1 Score: 76.3 bits (186), Expect = 1.620e-12
Identity = 33/84 (39.29%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:    1 IRGKKFLTSRSTIMQAGNCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAIEEL 252
            + GK F T+  T+ +  + ML++ F GK+++  DE G+ F+DRDG+RFRH+LN+LRC ++   ++     EI+EEA+++ ++ L
Sbjct:   13 VGGKYFETTVDTLTKYSDSMLSAWFSGKYSVLKDENGYVFLDRDGDRFRHILNYLRCGTVHIGEDIRLLGEILEEAEYFGLQSL 96
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17740.5377.1 vs. uniprot
Match: A0A8J1TZ96_OWEFU (Ofus.G08467 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TZ96_OWEFU)

HSP 1 Score: 77.0 bits (188), Expect = 4.560e-12
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:    1 IRGKKFLTSRSTIMQAGNCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAIEELRELCEKQLEALEEAKRKE 306
            + G  + T+R T+    N M+ +MF G  +   DE G  FIDRDGE F++VLNFLR S+L   D    Y  ++ EADFY I+ L +L    ++ ++E K+KE
Sbjct:   29 VGGVIYTTTRLTLTTYPNTMIGAMFNGNMSNTKDEHGRIFIDRDGELFKYVLNFLRSSTLSLPDGFKDYSSLLAEADFYQIQPLTDLVRNIIQEIDEEKKKE 130
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17740.5377.1 vs. uniprot
Match: W8SZD1_9ROSA (Putative FH protein n=1 Tax=Pyrus x bretschneideri TaxID=225117 RepID=W8SZD1_9ROSA)

HSP 1 Score: 75.5 bits (184), Expect = 1.240e-11
Identity = 37/82 (45.12%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:    1 IRGKKFLTSRSTIMQAG-NCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAI 243
            + GKKF T+  T+ Q   + MLA+MF G+  +  D++G+ FIDRDGE FRH+LN+LR   +P   EA +Y E+++EA +Y +
Sbjct:   15 VGGKKFSTTVDTLTQRQPDSMLAAMFSGRHTLRQDKKGYVFIDRDGEHFRHILNWLRDGEIPKL-EASQYAELVKEAKYYQL 95
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17740.5377.1 vs. uniprot
Match: A0A5N5GMK0_9ROSA (FH protein interacting protein FIP2-like n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5GMK0_9ROSA)

HSP 1 Score: 75.5 bits (184), Expect = 1.330e-11
Identity = 37/82 (45.12%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:    1 IRGKKFLTSRSTIMQAG-NCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAI 243
            + GKKF T+  T+ Q   + MLA+MF G+  +  D++G+ FIDRDGE FRH+LN+LR   +P   EA +Y E+++EA +Y +
Sbjct:   15 VGGKKFSTTVDTLTQRQPDSMLAAMFSGRHTLRQDKKGYVFIDRDGEHFRHILNWLRDGEIPKL-EASQYAELVKEAKYYQL 95
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17740.5377.1 vs. uniprot
Match: UPI0010A9FBA1 (FH protein interacting protein FIP2-like n=1 Tax=Malus domestica TaxID=3750 RepID=UPI0010A9FBA1)

HSP 1 Score: 75.1 bits (183), Expect = 1.590e-11
Identity = 37/82 (45.12%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:    1 IRGKKFLTSRSTIMQAG-NCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAI 243
            + GKKF T+  T+ Q   + MLA+MF G+  +  D++G+ FIDRDGE FRH+LN+LR   +P   EA +Y E+++EA +Y +
Sbjct:   15 VGGKKFSTTVGTLTQRQPDSMLAAMFSGRHTLRQDKKGYVFIDRDGEHFRHILNWLRDGEVPKL-EASQYAELVKEAKYYQL 95
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17740.5377.1 vs. uniprot
Match: A0A7S0SCY6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SCY6_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 2.480e-11
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:    1 IRGKKFLTSRSTIMQAGNCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCS----SLPSFDEAWRYEEIMEEADFYAI 243
            + G KF TS  T+    N  L S+F G+F +  D++G  FIDRDG  FRH+LNFLR       L +  +A R EEI+EEA+FY +
Sbjct:   48 VGGHKFTTSLQTLTAMPNTYLESLFSGRFELNLDDDGVYFIDRDGTHFRHILNFLRTYPRRLDLRTMPQAQR-EEILEEAEFYGM 131
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17740.5377.1 vs. uniprot
Match: A0A7S2ZVT2_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZVT2_9RHOD)

HSP 1 Score: 72.8 bits (177), Expect = 4.680e-11
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    1 IRGKKFLTSRSTIMQAGNCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSSLPSFDEAWRYEEIMEEADFYAIEELRELCEKQLEALE 288
            + G+KF T+  T+ +  + ML   F G+ ++  D EG  FIDRDG RFRH+LNFLR  S+    +   Y+EI+EEA ++ I  L +   ++++ LE
Sbjct:   16 VGGQKFSTTVDTLTKETDSMLGVWFSGRHDIRLDSEGRVFIDRDGFRFRHILNFLRNGSVHIAGDIVTYQEILEEARYFGIVSLEKRLTEEIQKLE 111
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17740.5377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYK4_ECTSI1.870e-8296.00BTB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CP50_9STRA1.040e-3853.37BTB/POZ protein n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A7S2H0D8_9STRA4.070e-2247.06Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
M2Y739_GALSU1.620e-1239.29Potassium channel tetramerisation domain-like prot... [more]
A0A8J1TZ96_OWEFU4.560e-1241.18Ofus.G08467 protein n=1 Tax=Owenia fusiformis TaxI... [more]
W8SZD1_9ROSA1.240e-1145.12Putative FH protein n=1 Tax=Pyrus x bretschneideri... [more]
A0A5N5GMK0_9ROSA1.330e-1145.12FH protein interacting protein FIP2-like n=1 Tax=P... [more]
UPI0010A9FBA11.590e-1145.12FH protein interacting protein FIP2-like n=1 Tax=M... [more]
A0A7S0SCY6_9CHLO2.480e-1145.88Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A7S2ZVT2_9RHOD4.680e-1139.58Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17740contigEcto-sp13_S_contig17740:2..3556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score247.7
Seed ortholog evalue3.2e-63
Seed eggNOG ortholog2880.D7FYK4
Model size1922
KEGG koko:K21919,ko:K21922
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.protein homooligomerization
EggNOG OGsKOG2716@1,KOG2716@2759
Ec32 ortholog descriptionBTB/POZ-like
Ec32 orthologEc-02_004350.1
Cds size411
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462920.3912997-UTR-Ecto-sp13_S_contig17740:1..14731681462920.3912997-UTR-Ecto-sp13_S_contig17740:1..1473Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17740 2..1473 -
1681462920.4388716-UTR-Ecto-sp13_S_contig17740:3517..35561681462920.4388716-UTR-Ecto-sp13_S_contig17740:3517..3556Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17740 3518..3556 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462920.4028397-CDS-Ecto-sp13_S_contig17740:1473..16651681462920.4028397-CDS-Ecto-sp13_S_contig17740:1473..1665Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17740 1474..1665 -
1681462920.4130738-CDS-Ecto-sp13_S_contig17740:2649..27741681462920.4130738-CDS-Ecto-sp13_S_contig17740:2649..2774Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17740 2650..2774 -
1681462920.4267092-CDS-Ecto-sp13_S_contig17740:3423..35171681462920.4267092-CDS-Ecto-sp13_S_contig17740:3423..3517Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17740 3424..3517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17740.5377.1prot_Ecto-sp13_S_contig17740.5377.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17740 1474..3517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17740.5377.1

>prot_Ecto-sp13_S_contig17740.5377.1 ID=prot_Ecto-sp13_S_contig17740.5377.1|Name=mRNA_Ecto-sp13_S_contig17740.5377.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
MQAGNCMLASMFRGKFNMETDEEGFAFIDRDGERFRHVLNFLRCSSLPSF
DEAWRYEEIMEEADFYAIEELRELCEKQLEALEEAKRKEKAKSFACRVTI
VEGASDGAAGQGSGGGGGGTARERYGTGYFTLDEDF*
back to top

mRNA from alignment at Ecto-sp13_S_contig17740:2..3556-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17740.5377.1 ID=mRNA_Ecto-sp13_S_contig17740.5377.1|Name=mRNA_Ecto-sp13_S_contig17740.5377.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17740:2..3556- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCAGGGGCAAGAAATTTCTGACGTCGCGGTCGACCATCATGCAGGCCGG
CAACTGCATGCTGGCCTCCATGTTCAGAGGAAAGTTCAACATGGAGACCG
ACGAGGAAGGGTTCGCCTTCATCGACCGCGACGGTGGGTATCACGCGTAC
ACTCCTGTGTAGCTTAGCGTAGCTCCCTGATGGCCGTAACCTGCTGCTGC
TGCAGGTAAACACCTACGGGTACAGATATGCATGCATGCACCTGTCTCGC
GCAGTGGGAGGGGGCTGTGCCCTGGCTCTTGGACGTCGCGTCGTGGCGTG
TCTAATAACAAGTACCACGTGTTCTTTTTTTGCCGTGCTAATGTACATCA
TCACATAGGCGTGTGTGTTGTCAAGAGCGCTACTTTTGCTACGCATAACA
AAGTCGATGTTCCCACGTGCAGCATCAAGGAATGTAGCAAATGGTGTGTG
TGTTTTGCTTGACCAACACCGTGCCGATCAGCCCAGGCCTGTGCCTACAC
ATGCTTACGCCTTCCACTCCCTTCGGTGTTGGTCATCCCGAGGGTGTAAA
ACCAGCAACGACAACGTTCCTGTTGCTGTTAAAGATGCGTGCCAACCCGA
TTGCGTCCACGAACTCTCGTAGACAGTACGCAGCAGTGTCAAAGGCGTTC
GAGATTACCTTGCACATACACACCCCACCCCGCTATCTCTCACTGACCTC
TCTCTCTCCCTCTCCCTCCCTCTCTCCCTCCCTCTCTTCTCTCCCCTCTC
TCTCGCCCCTTTCTCTCGCCCCTCATCCCTAGGAGAGAGGTTTCGGCACG
TACTCAACTTTCTCCGTTGCTCGAGCCTCCCTTCCTTCGATGAAGCCTGG
CGGTACGAGGAAATCATGGAGGAGGCAGACTTCTACGCGATCGAGGAACT
CAGGGAGGTGAGAAACAGGACCACCGGCAGAGAATCTTGCTCGGTTCGTT
GCTTGTCGTTTTTTTCCTGCTTCCCTTGTTTTGATGGGTTTATGATCGCA
ACGCGCGGTTTCGTTGACTGTTTGGATTTTTGCAGCAGAGGAAGGAATAA
TTGATGTGCTAGGACTGTTGAGACAGCAACACCAACGACGACTACGATGA
AAGTCCTGTTGGACTTGCAGTTGTCCCTGGTGTTGAAATAGTGTTGATTC
GTTGCGCGAGTCAAATATCGAAGGGGCGAGAGGATTTACACCGTCACGAG
TCTGGCGGGAAGCGACCACGATAGTTTAACATTGTTTGGGTTCAAAACGG
TAAGAGACCGACGGTCGCCTTCGTCACACGACGGGATCATGCCAGATTTT
GTTGCGTCTAGCTGAGGCTTGGAGTACCGCAGTAGAGAACCAAGTACGTC
GTAGGTTGTAAAACAGCGGTTGTTCACCGGCAGCAGCAGAAGGAGCAACA
CCAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTACCAAT
GCAACTGCCTGCTGAGTCGCACGAAAACACGCCTCAAGAGATGTTTCAAC
AACGCTTTTACGCGTGTTGAATCTCGCAACAGCTTGATTCACCCTGCCCT
GCACTTGCCAATACCCGCACCCGCCAGCCTTACATTTACCCCACCATCAC
CTCCTCCTGCTGCTGCTGCTATTGTTCTTTTTTTCTGTCAGCTTTGCGAG
AAACAACTCGAGGCCCTCGAAGAAGCGAAGCGAAAGGAAAAGGCCAAGTC
GTTCGCGTGCAGGGTCACAATAGTGGAGGGAGCATCGGACGGCGCCGCCG
GCCAGGGGAGCGGCGGCGGCGGTGGCGGCACCGCCAGGGAGCGCTACGGG
ACCGGATACTTTACCCTCGACGAAGACTTCTGATTTATTTATTTTTTTGC
CCCATGAAGAGAGGCTTCCTCGGGTTGGTCGAGGTGCTGTGGGTTGTATT
CGTGGTTGATGTTTTCGTGGCGTGTGTTCGTTCGTTTTCCCATCGAGCGT
GTGAGTTATCTGATTGTTTGGTTGATGTGAAAGGGGTACCTACGTGTTGC
TTACGGAGTGTCGATGCACTCTGTACCGTACGGTCAGCGAAAGAAGTGCA
TGTTGAATTTGTGGACGCGCTTGACTTACCAGGTGATCAACCCCCTCCGC
TCCCGCGCCCACACGCTCATATCAGCTAGCTCCTTGTCTTGTTGAGGTGG
TTCTCCTAGGGTTTCCTCGACGATGCTATATACATCGGGTGTGATCTGTG
ACCCTCAAAGAGGGGAGTGCCGGTATATACGTTTTTTTCGCTTTTTCTTG
CGCTCGGGGTGTTGGGTGAACGTCATAGAGAATCTCCTCATCGCGCGTGC
ATGATGCTCGTGGATGTTTGTTGAGATGGGGTGGGGGGGATTTCTCCCAG
CACAGCAGCACTATGTAGAACACTACAGCAATAGATTGTTTGAAGCGATT
CACACTCCTCGATGAGGGGGCAGGGGCAAAGGTCAAGTGTCCTGGTACGT
GTCGGGATTTTGTCGTTGGTTGTCTGGTGGTATTTGTTGGTTGTAAACTG
TGGTTTAGTTGTATTGCTACACGCGACGCGAACACAAACACATGATGGAG
TGGTTGGTTGTCTCGACTATCTGTTGAGGTCTTCTACGTACGAGACATGG
CATGTGGTCCCATCCTCAAGGGAGTCGCTGTGCGGTTGTGCCTCGCCATA
TTTGGACGAGAGATGGGAGCGAGCAATGAGAGGGTGAATTCATGACCACA
CAGGAACTGTTTTCAGATTCGGCGTTGTTGTGTACCATACGGGTTGAGGG
ATGATGTCCCCCGGCCATTTGGTCCGTGTTGGGAGGTGCGCACCCGGCGA
AGGACTCGCAAGGGGCAAGGAGGCGCGCATGTTGTGTGCAATGATGCGAG
AGTGCGTGTGATGTGTTGAGGCGTATTGTTGGGGTACAGAATGATGTGAT
CTCATTGCTTGTTGCGTGTTTGTTATGGGTGCGGGGAGGAAATAGAAGGA
ACGCGCCGTCCAAGCGGAATTTCATATTATTTATTTTTTCTCTACTTGGT
TCGTGCGGGGTGCGATAGAATGTGGGCAAAAGGGAGTGCTCTTGCCTTTG
CTTCTCGTGCGGTCTCGTTCGTCATCTGCCCGTGTGGTCGCGTAAGGGCG
TGGGTGATGTGTGTCTTGTGATGGCTACGGCTGTTTGGTCGTTGTGTCTT
TCTTTCTACGCGATGAATGAACTATGAATCACCACTACAATGTACAAGGA
AGCTGTCATTTGCCCTGCTCCCTCTTCATCCGCGTAAAGCAGCGGTGGTG
TGGTGGTGCAAGGAGGAGCGGTTGTTCGGACCCGGTGTCCTTGGTGTGGG
ACTTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17740:2..3556-

>mRNA_Ecto-sp13_S_contig17740.5377.1 ID=mRNA_Ecto-sp13_S_contig17740.5377.1|Name=mRNA_Ecto-sp13_S_contig17740.5377.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17740:2..3556- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGCCGGCAACTGCATGCTGGCCTCCATGTTCAGAGGAAAGTTCAA
CATGGAGACCGACGAGGAAGGGTTCGCCTTCATCGACCGCGACGGAGAGA
GGTTTCGGCACGTACTCAACTTTCTCCGTTGCTCGAGCCTCCCTTCCTTC
GATGAAGCCTGGCGGTACGAGGAAATCATGGAGGAGGCAGACTTCTACGC
GATCGAGGAACTCAGGGAGCTTTGCGAGAAACAACTCGAGGCCCTCGAAG
AAGCGAAGCGAAAGGAAAAGGCCAAGTCGTTCGCGTGCAGGGTCACAATA
GTGGAGGGAGCATCGGACGGCGCCGCCGGCCAGGGGAGCGGCGGCGGCGG
TGGCGGCACCGCCAGGGAGCGCTACGGGACCGGATACTTTACCCTCGACG
AAGACTTCTGA
back to top